Gene annotation
Transcriptome id Sobic.002G007500.1
Synonym Sb02g000870
Functional annotation 3-5 exonuclease domain-containing protein, putative, expressed
UniProt C5X783
Pfam PF01612
Panther DB PTHR13620 PTHR13620:SF8
NCBI CDD -
KEGG Orthology -
Gene Ontology GO:0008408; 3'-5' exonuclease activity GO:0006139nucleobase-containing compound metabolic process GO:0003676nucleic acid binding


Orthologs (automatic annotation)
TAIR AT2G36110 : Polynucleotidyl transferase, ribonuclease H-like superfamily protein
RAP-DB (Rice) LOC_Os07g02180.1 : 3-5 exonuclease domain-containing protein, putative, expressed
MaizeGDB (Corn) -
Brachypodium -
Barley -
Wheat -
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.008G163900 OsFBX358 - F-box domain containing protein, expressed -
2 Sobic.009G180300 LTPL61 - Protease inhibitor/seed storage/LTP family protein precursor, putative, expressed -
3 Sobic.004G017500 helix-loop-helix DNA-binding domain containing protein, expressed -
4 Sobic.006G067300 OsFBX103 - F-box domain containing protein, expressed -
5 Sobic.002G121100 OsSCP56 - Putative Serine Carboxypeptidase homologue, expressed K16296: serine carboxypeptidase-like clade I
6 Sobic.008G057500 Aldehyde dehydrogenase 3 H1(PubMedID : 26320239)@aldehyde dehydrogenase, putative, expressed K00128: aldehyde dehydrogenase (NAD+)
7 Sobic.010G043300 expressed protein -
8 Sobic.004G089400 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@ABC transporter, ATP-binding protein, putative, expressed -
9 Sobic.009G187700 "domain confirmed by Pfam database, expression supported by NCBI EST database, expressed in leaf, expression induced by IAA and BR treatments"(PubMedID : 20499123)@OsGH3.4 - Probable indole-3-acetic acid-amido synthetase, expressed K14487: auxin responsive GH3 gene family
10 Sobic.003G164300 cullin, putative, expressed K03347: CUL1, cullin 1
11 Sobic.005G006701 - -
12 Sobic.004G149200 ankyrin, putative, expressed -
13 Sobic.006G015700 expressed protein -
14 Sobic.007G010350 - -
15 Sobic.007G219300 BURP domain containing protein, expressed -
16 Sobic.003G180700 major facilitator superfamily antiporter, putative, expressed -
17 Sobic.001G355300 aldose 1-epimerase, putative, expressed K01785: galM, aldose 1-epimerase
18 Sobic.001G092650 - -
19 Sobic.001G092700 - -
20 Sobic.007G083500 speckle-type POZ protein, putative, expressed K10523: speckle-type POZ protein


Gene co-expression network
sample Sobic002G007500 Sobic002G007500 Sobic008G163900 Sobic008G163900 Sobic002G007500--Sobic008G163900 Sobic009G180300 Sobic009G180300 Sobic002G007500--Sobic009G180300 Sobic004G017500 Sobic004G017500 Sobic002G007500--Sobic004G017500 Sobic006G067300 Sobic006G067300 Sobic002G007500--Sobic006G067300 Sobic002G121100 Sobic002G121100 Sobic002G007500--Sobic002G121100 Sobic008G057500 Sobic008G057500 Sobic002G007500--Sobic008G057500 Sobic010G043300 Sobic010G043300 Sobic002G007500--Sobic010G043300 Sobic004G089400 Sobic004G089400 Sobic002G007500--Sobic004G089400 Sobic009G187700 Sobic009G187700 Sobic002G007500--Sobic009G187700 Sobic008G163900--Sobic004G017500 Sobic008G163900--Sobic002G007500 Sobic006G015700 Sobic006G015700 Sobic008G163900--Sobic006G015700 Sobic008G163900--Sobic009G180300 Sobic010G090000 Sobic010G090000 Sobic008G163900--Sobic010G090000 Sobic010G261800 Sobic010G261800 Sobic008G163900--Sobic010G261800 Sobic008G163900--Sobic006G067300 Sobic008G163900--Sobic002G121100 Sobic003G180700 Sobic003G180700 Sobic008G163900--Sobic003G180700 Sobic009G180300--Sobic009G187700 Sobic009G180300--Sobic006G067300 Sobic009G180300--Sobic002G007500 Sobic009G180300--Sobic004G089400 Sobic005G006701 Sobic005G006701 Sobic009G180300--Sobic005G006701 Sobic003G062900 Sobic003G062900 Sobic009G180300--Sobic003G062900 Sobic009G180300--Sobic008G057500 Sobic002G260100 Sobic002G260100 Sobic009G180300--Sobic002G260100 Sobic004G149200 Sobic004G149200 Sobic009G180300--Sobic004G149200 Sobic004G017500--Sobic008G163900 Sobic004G017500--Sobic002G007500 Sobic004G017500--Sobic009G180300 Sobic001G359000 Sobic001G359000 Sobic004G017500--Sobic001G359000 Sobic004G017500--Sobic006G067300 Sobic009G168100 Sobic009G168100 Sobic004G017500--Sobic009G168100 Sobic004G218100 Sobic004G218100 Sobic004G017500--Sobic004G218100 Sobic004G017500--Sobic006G015700 Sobic008G140600 Sobic008G140600 Sobic004G017500--Sobic008G140600 Sobic006G067300--Sobic005G006701 Sobic003G164300 Sobic003G164300 Sobic006G067300--Sobic003G164300 Sobic006G067300--Sobic004G089400 Sobic006G067300--Sobic010G043300 Sobic006G067300--Sobic009G180300 Sobic006G067300--Sobic004G149200 Sobic007G010350 Sobic007G010350 Sobic006G067300--Sobic007G010350 Sobic006G067300--Sobic008G057500 Sobic001G092700 Sobic001G092700 Sobic006G067300--Sobic001G092700 Sobic007G219300 Sobic007G219300 Sobic002G121100--Sobic007G219300 Sobic002G121100--Sobic003G180700 Sobic001G355300 Sobic001G355300 Sobic002G121100--Sobic001G355300 Sobic009G067100 Sobic009G067100 Sobic002G121100--Sobic009G067100 Sobic007G083500 Sobic007G083500 Sobic002G121100--Sobic007G083500 Sobic001G092650 Sobic001G092650 Sobic002G121100--Sobic001G092650 Sobic002G298500 Sobic002G298500 Sobic002G121100--Sobic002G298500 Sobic002G121100--Sobic010G043300 Sobic002G121100--Sobic010G261800 Sobic008G057500--Sobic006G067300 Sobic008G057500--Sobic005G006701 Sobic008G057500--Sobic010G043300 Sobic008G057500--Sobic004G089400 Sobic008G057500--Sobic009G180300 Sobic008G057500--Sobic007G010350 Sobic008G057500--Sobic003G164300 Sobic008G057500--Sobic007G219300 Sobic008G057500--Sobic004G149200 Sobic010G043300--Sobic005G006701 Sobic010G043300--Sobic007G219300 Sobic010G043300--Sobic007G010350 Sobic010G043300--Sobic001G092650 Sobic010G043300--Sobic003G180700 Sobic010G043300--Sobic001G355300 Sobic010G043300--Sobic001G092700 Sobic010G043300--Sobic009G067100 Sobic010G043300--Sobic007G083500 Sobic004G089400--Sobic005G006701 Sobic004G089400--Sobic004G149200 Sobic004G089400--Sobic003G062900 Sobic004G089400--Sobic010G043300 Sobic004G089400--Sobic002G260100 Sobic006G059400 Sobic006G059400 Sobic004G089400--Sobic006G059400 Sobic004G089400--Sobic006G067300 Sobic003G070200 Sobic003G070200 Sobic004G089400--Sobic003G070200 Sobic001G359100 Sobic001G359100 Sobic004G089400--Sobic001G359100 Sobic009G187700--Sobic009G180300 Sobic007G068700 Sobic007G068700 Sobic009G187700--Sobic007G068700 Sobic009G187700--Sobic003G062900 Sobic001G153800 Sobic001G153800 Sobic009G187700--Sobic001G153800 Sobic009G187700--Sobic006G059400 Sobic009G187700--Sobic003G070200 Sobic009G187700--Sobic001G359100 Sobic002G334400 Sobic002G334400 Sobic009G187700--Sobic002G334400 Sobic009G187700--Sobic002G260100
Octagon: transcription factors


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