Gene annotation
Transcriptome id Sobic.009G153400.1
Synonym Sb09g021690, SbDof25, DNA binding with One Finger
Functional annotation Homologous to Dof genes in Arabidopsis and rice. (PubMedID : 21161392)
dof zinc finger domain containing protein, putative, expressed
UniProt G3LI12 , R4N5W9 , C5YYR4
Pfam PF02701
Panther DB PTHR31992 PTHR31992:SF36
NCBI CDD -
KEGG Orthology -
Gene Ontology GO:0006355; regulation of transcription, DNA-templated GO:0003677DNA binding


Orthologs (automatic annotation)
TAIR AT3G52440 : Dof-type zinc finger DNA-binding family protein
RAP-DB (Rice) LOC_Os05g36900.1 : dof zinc finger domain containing protein, putative, expressed
MaizeGDB (Corn) Zm00025a049197 , Zm00025a025405 , Zm00025a004485 , Zm00025a009285 , Zm00025a047370 , Zm00025a017356 , Zm00025a004247 , Zm00025a007115 , Zm00025a032602 , Zm00025a007401 , Zm00025a023031 , Zm00025a052752 , Zm00025a006464 , Zm00025a039572 , Zm00025a016727 , Zm00025a014147 , Zm00025a021740 , Zm00025a021884 , Zm00025a001854 , Zm00025a000851 , Zm00025a017302 , Zm00025a032473 , Zm00025a057389 , Zm00025a014756 , Zm00025a008288 , Zm00025a004967 , Zm00025a048181 , Zm00025a026723 , Zm00025a043793
Brachypodium KQK22335 , KQK14158 , PNT73247 , PNT69224 , KQK00955 , KQK16070 , PNT65625 , PNT65624 , KQJ98766 , PNT69485 , KQJ90639 , KQK03138 , KQJ97295 , KQK06036 , KQK14319 , KQK23432 , KQK00737 , KQJ84092 , KQK00738
Barley HORVU6Hr1G065250.4 , HORVU6Hr1G065250.5 , HORVU6Hr1G065250.6 , HORVU6Hr1G065250.7 , HORVU2Hr1G119110.7 , HORVU5Hr1G048700.1 , HORVU6Hr1G065250.2 , HORVU6Hr1G065250.3 , HORVU2Hr1G119110.9 , HORVU2Hr1G119110.8 , HORVU6Hr1G065250.8 , HORVU6Hr1G065250.9 , HORVU2Hr1G119110.3 , HORVU2Hr1G013060.1 , HORVU6Hr1G065250.1 , HORVU2Hr1G119110.6 , HORVU2Hr1G119110.5 , HORVU6Hr1G065250.10 , HORVU2Hr1G119160.6 , HORVU2Hr1G119160.4 , HORVU2Hr1G119160.2 , HORVU2Hr1G119160.3 , HORVU2Hr1G119160.1 , HORVU5Hr1G097620.1 , HORVU7Hr1G043250.2 , HORVU1Hr1G044560.1 , HORVU4Hr1G074990.3 , HORVU4Hr1G074990.2 , HORVU4Hr1G074990.1 , HORVU2Hr1G119110.4 , HORVU1Hr1G074140.1 , HORVU3Hr1G083460.1 , HORVU4Hr1G013890.1
Wheat TraesCS5B02G154100 , TraesCS2A02G402200 , TraesCS4B02G206800 , TraesCS2D02G563000 , TraesCS4A02G097800 , TraesCS5A02G155900 , TraesCS4B02G286400 , TraesCS2D02G563400 , TraesCS6D02G236700 , TraesCS2D02G563200 , TraesCS6B02G301500 , TraesCS4D02G285100 , TraesCS2B02G592600 , TraesCS4D02G207600 , TraesCS2D02G399500 , TraesCS2B02G592900 , TraesCS2A02G590800 , TraesCS2B02G592800 , TraesCS4A02G017700 , TraesCS6A02G274000 , TraesCS2B02G592700 , TraesCS2A02G591200 , TraesCS5D02G161000 , TraesCS6D02G254200 , TraesCS6B02G270100 , TraesCS2B02G420400 , TraesCS6A02G255500
Populus PNT43441


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.004G341300 3-ketoacyl-CoA synthase, putative, expressed K15397: 3-ketoacyl-CoA synthase
2 Sobic.004G218100 Protein octadecanal decarbonylase CER1 (Os)(PubMedID : 27208977)@WAX2, putative, expressed K15404: K15404, aldehyde decarbonylase
3 Sobic.002G248300 polygalacturonase inhibitor 1 precursor, putative, expressed -
4 Sobic.010G231600 cytochrome P450, putative, expressed -
5 Sobic.003G098100 aquaporin protein, putative, expressed K09874: aquaporin NIP
6 Sobic.003G045700 pleiotropic drug resistance protein, putative, expressed -
7 Sobic.009G146000 SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@galactosyltransferase, putative, expressed -
8 Sobic.006G281132 - -
9 Sobic.002G028201 - K10523: speckle-type POZ protein
10 Sobic.008G156100 ankyrin repeat domain-containing protein 44, putative, expressed -
11 Sobic.005G164000 glucan endo-1,3-beta-glucosidase precursor, putative, expressed -
12 Sobic.005G006000 TMS membrane protein/tumour differentially expressed protein, putative, expressed -
13 Sobic.004G017500 helix-loop-helix DNA-binding domain containing protein, expressed -
14 Sobic.003G367100 Homologous to Dof genes in Arabidopsis and rice.(PubMedID : 21161392)@dof zinc finger domain containing protein, putative, expressed -
15 Sobic.001G441700 glycosyl hydrolases family 16, putative, expressed K08235: xyloglucan:xyloglucosyl transferase
16 Sobic.005G006500 - -
17 Sobic.008G155900 ankyrin-1, putative, expressed -
18 Sobic.001G207600 white-brown complex homolog protein 11, putative, expressed -
19 Sobic.006G005700 OsSCP18 - Putative Serine Carboxypeptidase homologue, expressed K09646: serine carboxypeptidase 1
20 Sobic.009G031400 AMP-binding enzyme, putative, expressed K01897: ACSL, long-chain acyl-CoA synthetase


Gene co-expression network
sample Sobic009G153400 Sobic009G153400 Sobic004G341300 Sobic004G341300 Sobic009G153400--Sobic004G341300 Sobic004G218100 Sobic004G218100 Sobic009G153400--Sobic004G218100 Sobic002G248300 Sobic002G248300 Sobic009G153400--Sobic002G248300 Sobic010G231600 Sobic010G231600 Sobic009G153400--Sobic010G231600 Sobic003G098100 Sobic003G098100 Sobic009G153400--Sobic003G098100 Sobic003G045700 Sobic003G045700 Sobic009G153400--Sobic003G045700 Sobic009G146000 Sobic009G146000 Sobic009G153400--Sobic009G146000 Sobic006G281132 Sobic006G281132 Sobic009G153400--Sobic006G281132 Sobic002G028201 Sobic002G028201 Sobic009G153400--Sobic002G028201 Sobic005G006000 Sobic005G006000 Sobic004G341300--Sobic005G006000 Sobic009G048600 Sobic009G048600 Sobic004G341300--Sobic009G048600 Sobic006G005700 Sobic006G005700 Sobic004G341300--Sobic006G005700 Sobic008G156100 Sobic008G156100 Sobic004G341300--Sobic008G156100 Sobic004G341300--Sobic002G028201 Sobic004G341300--Sobic006G281132 Sobic004G341300--Sobic009G146000 Sobic003G367100 Sobic003G367100 Sobic004G341300--Sobic003G367100 Sobic001G266600 Sobic001G266600 Sobic004G341300--Sobic001G266600 Sobic009G187700 Sobic009G187700 Sobic004G218100--Sobic009G187700 Sobic009G180300 Sobic009G180300 Sobic004G218100--Sobic009G180300 Sobic007G068700 Sobic007G068700 Sobic004G218100--Sobic007G068700 Sobic010G195800 Sobic010G195800 Sobic004G218100--Sobic010G195800 Sobic004G218100--Sobic001G266600 Sobic004G218100--Sobic003G098100 Sobic007G162200 Sobic007G162200 Sobic004G218100--Sobic007G162200 Sobic004G218100--Sobic009G048600 Sobic002G007500 Sobic002G007500 Sobic004G218100--Sobic002G007500 Sobic005G006500 Sobic005G006500 Sobic002G248300--Sobic005G006500 Sobic002G129800 Sobic002G129800 Sobic002G248300--Sobic002G129800 Sobic005G164000 Sobic005G164000 Sobic002G248300--Sobic005G164000 Sobic003G090650 Sobic003G090650 Sobic002G248300--Sobic003G090650 Sobic002G353100 Sobic002G353100 Sobic002G248300--Sobic002G353100 Sobic006G005800 Sobic006G005800 Sobic002G248300--Sobic006G005800 Sobic004G309700 Sobic004G309700 Sobic002G248300--Sobic004G309700 Sobic003G140100 Sobic003G140100 Sobic002G248300--Sobic003G140100 Sobic005G110900 Sobic005G110900 Sobic002G248300--Sobic005G110900 Sobic010G231600--Sobic003G045700 Sobic001G207600 Sobic001G207600 Sobic010G231600--Sobic001G207600 Sobic006G014400 Sobic006G014400 Sobic010G231600--Sobic006G014400 Sobic001G023500 Sobic001G023500 Sobic010G231600--Sobic001G023500 Sobic004G283800 Sobic004G283800 Sobic010G231600--Sobic004G283800 Sobic001G441700 Sobic001G441700 Sobic010G231600--Sobic001G441700 Sobic009G031400 Sobic009G031400 Sobic010G231600--Sobic009G031400 Sobic009G173200 Sobic009G173200 Sobic010G231600--Sobic009G173200 Sobic001G266200 Sobic001G266200 Sobic010G231600--Sobic001G266200 Sobic003G098100--Sobic009G146000 Sobic003G098100--Sobic005G006000 Sobic003G098100--Sobic008G156100 Sobic003G098100--Sobic002G028201 Sobic003G098100--Sobic006G281132 Sobic003G098100--Sobic009G048600 Sobic003G098100--Sobic003G367100 Sobic003G098100--Sobic001G266600 Sobic003G098100--Sobic006G005700 Sobic003G045700--Sobic010G231600 Sobic003G045700--Sobic001G207600 Sobic003G045700--Sobic004G283800 Sobic005G156100 Sobic005G156100 Sobic003G045700--Sobic005G156100 Sobic003G045700--Sobic009G031400 Sobic003G045700--Sobic001G441700 Sobic006G125800 Sobic006G125800 Sobic003G045700--Sobic006G125800 Sobic003G045700--Sobic001G023500 Sobic003G045700--Sobic009G173200 Sobic009G146000--Sobic006G281132 Sobic009G146000--Sobic002G028201 Sobic009G146000--Sobic008G156100 Sobic009G146000--Sobic005G006000 Sobic009G146000--Sobic003G098100 Sobic009G146000--Sobic009G048600 Sobic009G146000--Sobic003G367100 Sobic009G146000--Sobic006G005700 Sobic009G146000--Sobic001G266600 Sobic006G281132--Sobic002G028201 Sobic006G281132--Sobic008G156100 Sobic006G281132--Sobic005G006000 Sobic006G281132--Sobic009G146000 Sobic006G281132--Sobic009G048600 Sobic006G281132--Sobic006G005700 Sobic006G281132--Sobic001G266600 Sobic006G281132--Sobic003G367100 Sobic006G281132--Sobic003G098100 Sobic002G028201--Sobic008G156100 Sobic002G028201--Sobic006G281132 Sobic002G028201--Sobic005G006000 Sobic002G028201--Sobic009G146000 Sobic002G028201--Sobic009G048600 Sobic002G028201--Sobic006G005700 Sobic002G028201--Sobic001G266600 Sobic002G028201--Sobic003G367100 Sobic002G028201--Sobic003G098100
Octagon: transcription factors


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