Gene annotation
| Transcriptome id | Sobic.009G031400.2,Sobic.009G031400.1 |
|---|---|
| Synonym | CER8, LACS1, Sb09g002640 |
| Functional annotation | AMP-binding enzyme, putative, expressed |
| UniProt | A0A1B6P687 , A0A1B6P680 |
| Pfam | PF00501 |
| Panther DB | PTHR24096 PTHR24096:SF111 |
| NCBI CDD | - |
| KEGG Orthology | K01897; ACSL, long-chain acyl-CoA synthetase |
| Gene Ontology | GO:0008152; metabolic process GO:0003824catalytic activity |
Orthologs (automatic annotation)
| TAIR | AT2G47240 : AMP-dependent synthetase and ligase family protein |
|---|---|
| RAP-DB (Rice) | LOC_Os05g04170.3,LOC_Os05g04170.2 : AMP-binding enzyme, putative, expressed |
| MaizeGDB (Corn) | Zm00025a055296 , Zm00025a054504 |
| Brachypodium | PNT72020 , KQK07935 , KQK07936 , KQK07937 , PNT72019 |
| Barley | HORVU1Hr1G016200.18 , HORVU1Hr1G016200.10 , HORVU1Hr1G016200.11 , HORVU1Hr1G016200.12 , HORVU1Hr1G016200.13 , HORVU1Hr1G016200.14 , HORVU1Hr1G016200.15 , HORVU1Hr1G016200.16 , HORVU1Hr1G016200.17 , HORVU1Hr1G016200.9 , HORVU1Hr1G016200.6 , HORVU1Hr1G016200.8 , HORVU1Hr1G016200.2 , HORVU1Hr1G016200.3 , HORVU1Hr1G016200.1 , HORVU1Hr1G016200.7 , HORVU1Hr1G016200.4 , HORVU1Hr1G016200.5 |
| Wheat | TraesCS1D02G077600 , TraesCS1D02G077600 , TraesCS1D02G077600 , TraesCS1B02G093600 , TraesCS1A02G075000 |
| Populus | PNT20741 , PNT20740 |
JBrowse
| Sobic.009G031400 |
Expression pattern by RNA-Seq analysis
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Find similar expressed genes
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| Rank | Gene | Function | KEGG orthology |
|---|---|---|---|
| 1 | Sobic.005G197200 | - | - |
| 2 | Sobic.005G146300 | Ser/Thr protein phosphatase family protein, putative, expressed | K14379: tartrate-resistant acid phosphatase type 5 |
| 3 | Sobic.003G045700 | pleiotropic drug resistance protein, putative, expressed | - |
| 4 | Sobic.006G005700 | OsSCP18 - Putative Serine Carboxypeptidase homologue, expressed | K09646: serine carboxypeptidase 1 |
| 5 | Sobic.006G281132 | - | - |
| 6 | Sobic.002G028201 | - | K10523: speckle-type POZ protein |
| 7 | Sobic.008G156100 | ankyrin repeat domain-containing protein 44, putative, expressed | - |
| 8 | Sobic.010G231600 | cytochrome P450, putative, expressed | - |
| 9 | Sobic.005G006000 | TMS membrane protein/tumour differentially expressed protein, putative, expressed | - |
| 10 | Sobic.004G341300 | 3-ketoacyl-CoA synthase, putative, expressed | K15397: 3-ketoacyl-CoA synthase |
| 11 | Sobic.009G146000 | SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@galactosyltransferase, putative, expressed | - |
| 12 | Sobic.009G048600 | - | - |
| 13 | Sobic.001G066900 | SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@OsMan06 - Endo-Beta-Mannanase, expressed | K19355: mannan endo-1,4-beta-mannosidase |
| 14 | Sobic.003G367100 | Homologous to Dof genes in Arabidopsis and rice.(PubMedID : 21161392)@dof zinc finger domain containing protein, putative, expressed | - |
| 15 | Sobic.001G207600 | white-brown complex homolog protein 11, putative, expressed | - |
| 16 | Sobic.009G037300 | transferase family protein, putative, expressed | - |
| 17 | Sobic.004G309700 | OsMan03 - Endo-Beta-Mannanase, expressed | K19355: mannan endo-1,4-beta-mannosidase |
| 18 | Sobic.001G265900 | "similar to Proline-rich protein precursor, structural protein of cell walls in plants"(PubMedID : 24655390)@similar to Proline-rich protein precursor(PubMedID : 24655390)@POEI13 - Pollen Ole e I allergen and extensin family protein precursor, expressed | - |
| 19 | Sobic.001G266600 | LTPL37 - Protease inhibitor/seed storage/LTP family protein precursor, expressed | - |
| 20 | Sobic.003G098100 | aquaporin protein, putative, expressed | K09874: aquaporin NIP |
Gene co-expression network
Octagon: transcription factors
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