Gene annotation
Transcriptome id Sobic.001G066900.1
Synonym Sb01g006080
Functional annotation SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence. (PubMedID : 27586543)
OsMan06 - Endo-Beta-Mannanase, expressed
UniProt C5WY82
Pfam PF00150
Panther DB PTHR31451 PTHR31451:SF17
NCBI CDD -
KEGG Orthology K19355; mannan endo-1,4-beta-mannosidase
Gene Ontology GO:0005975; carbohydrate metabolic process GO:0004553hydrolase activity, hydrolyzing O-glycosyl compounds


Orthologs (automatic annotation)
TAIR AT5G01930 : Glycosyl hydrolase superfamily protein
RAP-DB (Rice) LOC_Os05g25480.1 : OsMan06 - Endo-Beta-Mannanase, expressed
MaizeGDB (Corn) Zm00025a040330
Brachypodium -
Barley -
Wheat -
Populus -


JBrowse

Open New Page


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.010G196400 expressed protein -
2 Sobic.001G265900 "similar to Proline-rich protein precursor, structural protein of cell walls in plants"(PubMedID : 24655390)@similar to Proline-rich protein precursor(PubMedID : 24655390)@POEI13 - Pollen Ole e I allergen and extensin family protein precursor, expressed -
3 Sobic.005G146300 Ser/Thr protein phosphatase family protein, putative, expressed K14379: tartrate-resistant acid phosphatase type 5
4 Sobic.008G112200 Expressed in middle stem(PubMedID : 28649278)@myb-like DNA-binding domain containing protein, putative, expressed K09422: transcription factor MYB, plant
5 Sobic.009G031400 AMP-binding enzyme, putative, expressed K01897: ACSL, long-chain acyl-CoA synthetase
6 Sobic.001G250200 glycerol-3-phosphate acyltransferase, putative, expressed -
7 Sobic.010G199700 STRUBBELIG-RECEPTOR FAMILY 7 precursor, putative, expressed -
8 Sobic.002G003200 peroxidase precursor, putative, expressed K00430: peroxidase
9 Sobic.003G352800 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence./late senescence marker during developmental senescence(PubMedID : 27586543)@Protein L-ascorbate oxidase precursor (Os)(PubMedID : 27208977)@laccase precursor protein, putative, expressed K05909: laccase
10 Sobic.006G166800 plastocyanin-like domain containing protein, putative, expressed -
11 Sobic.007G027200 anthocyanidin 3-O-glucosyltransferase, putative, expressed -
12 Sobic.003G153400 GDSL-like lipase/acylhydrolase, putative, expressed -
13 Sobic.003G045700 pleiotropic drug resistance protein, putative, expressed -
14 Sobic.005G197200 - -
15 Sobic.009G211800 UDP-glucoronosyl and UDP-glucosyl transferase domain containing protein, expressed -
16 Sobic.008G139400 expressed protein -
17 Sobic.005G147800 Ser/Thr protein phosphatase family protein, putative, expressed -
18 Sobic.009G162800 laccase precursor protein, putative, expressed K05909: laccase
19 Sobic.008G082400 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@- -
20 Sobic.004G168700 harpin-induced protein 1 domain containing protein, expressed -


Gene co-expression network
sample Sobic001G066900 Sobic001G066900 Sobic010G196400 Sobic010G196400 Sobic001G066900--Sobic010G196400 Sobic001G265900 Sobic001G265900 Sobic001G066900--Sobic001G265900 Sobic005G146300 Sobic005G146300 Sobic001G066900--Sobic005G146300 Sobic008G112200 Sobic008G112200 Sobic001G066900--Sobic008G112200 Sobic009G031400 Sobic009G031400 Sobic001G066900--Sobic009G031400 Sobic001G250200 Sobic001G250200 Sobic001G066900--Sobic001G250200 Sobic010G199700 Sobic010G199700 Sobic001G066900--Sobic010G199700 Sobic002G003200 Sobic002G003200 Sobic001G066900--Sobic002G003200 Sobic003G352800 Sobic003G352800 Sobic001G066900--Sobic003G352800 Sobic009G162800 Sobic009G162800 Sobic010G196400--Sobic009G162800 Sobic010G196400--Sobic001G066900 Sobic010G196400--Sobic001G265900 Sobic006G166800 Sobic006G166800 Sobic010G196400--Sobic006G166800 Sobic001G307300 Sobic001G307300 Sobic010G196400--Sobic001G307300 Sobic003G153400 Sobic003G153400 Sobic010G196400--Sobic003G153400 Sobic001G275600 Sobic001G275600 Sobic010G196400--Sobic001G275600 Sobic009G151000 Sobic009G151000 Sobic010G196400--Sobic009G151000 Sobic010G196400--Sobic001G250200 Sobic005G147800 Sobic005G147800 Sobic001G265900--Sobic005G147800 Sobic001G265900--Sobic010G196400 Sobic001G265900--Sobic001G250200 Sobic001G265900--Sobic001G066900 Sobic007G142300 Sobic007G142300 Sobic001G265900--Sobic007G142300 Sobic002G397400 Sobic002G397400 Sobic001G265900--Sobic002G397400 Sobic010G107200 Sobic010G107200 Sobic001G265900--Sobic010G107200 Sobic001G265900--Sobic001G307300 Sobic008G082400 Sobic008G082400 Sobic001G265900--Sobic008G082400 Sobic007G033300 Sobic007G033300 Sobic005G146300--Sobic007G033300 Sobic005G146300--Sobic001G066900 Sobic005G146300--Sobic009G031400 Sobic004G341300 Sobic004G341300 Sobic005G146300--Sobic004G341300 Sobic002G039400 Sobic002G039400 Sobic005G146300--Sobic002G039400 Sobic003G045700 Sobic003G045700 Sobic005G146300--Sobic003G045700 Sobic001G441700 Sobic001G441700 Sobic005G146300--Sobic001G441700 Sobic003G430000 Sobic003G430000 Sobic005G146300--Sobic003G430000 Sobic003G183800 Sobic003G183800 Sobic005G146300--Sobic003G183800 Sobic008G112200--Sobic010G199700 Sobic009G241600 Sobic009G241600 Sobic008G112200--Sobic009G241600 Sobic008G059800 Sobic008G059800 Sobic008G112200--Sobic008G059800 Sobic008G112200--Sobic001G066900 Sobic003G236701 Sobic003G236701 Sobic008G112200--Sobic003G236701 Sobic009G153800 Sobic009G153800 Sobic008G112200--Sobic009G153800 Sobic001G468300 Sobic001G468300 Sobic008G112200--Sobic001G468300 Sobic002G164600 Sobic002G164600 Sobic008G112200--Sobic002G164600 Sobic009G226900 Sobic009G226900 Sobic008G112200--Sobic009G226900 Sobic005G197200 Sobic005G197200 Sobic009G031400--Sobic005G197200 Sobic009G031400--Sobic005G146300 Sobic009G031400--Sobic003G045700 Sobic006G005700 Sobic006G005700 Sobic009G031400--Sobic006G005700 Sobic006G281132 Sobic006G281132 Sobic009G031400--Sobic006G281132 Sobic002G028201 Sobic002G028201 Sobic009G031400--Sobic002G028201 Sobic008G156100 Sobic008G156100 Sobic009G031400--Sobic008G156100 Sobic010G231600 Sobic010G231600 Sobic009G031400--Sobic010G231600 Sobic005G006000 Sobic005G006000 Sobic009G031400--Sobic005G006000 Sobic001G250200--Sobic001G265900 Sobic001G250200--Sobic010G196400 Sobic001G250200--Sobic005G147800 Sobic001G250200--Sobic001G066900 Sobic007G107950 Sobic007G107950 Sobic001G250200--Sobic007G107950 Sobic001G250200--Sobic010G107200 Sobic003G085200 Sobic003G085200 Sobic001G250200--Sobic003G085200 Sobic001G250200--Sobic007G142300 Sobic001G221200 Sobic001G221200 Sobic001G250200--Sobic001G221200 Sobic010G199700--Sobic009G241600 Sobic010G199700--Sobic008G112200 Sobic007G027200 Sobic007G027200 Sobic010G199700--Sobic007G027200 Sobic010G199700--Sobic008G059800 Sobic010G199700--Sobic003G153400 Sobic010G199700--Sobic001G468300 Sobic010G199700--Sobic003G236701 Sobic010G199700--Sobic006G166800 Sobic010G199700--Sobic009G153800 Sobic002G003200--Sobic003G352800 Sobic002G003200--Sobic009G153800 Sobic004G344200 Sobic004G344200 Sobic002G003200--Sobic004G344200 Sobic001G405000 Sobic001G405000 Sobic002G003200--Sobic001G405000 Sobic002G003200--Sobic008G059800 Sobic006G001000 Sobic006G001000 Sobic002G003200--Sobic006G001000 Sobic009G162500 Sobic009G162500 Sobic002G003200--Sobic009G162500 Sobic002G003200--Sobic001G066900 Sobic008G163000 Sobic008G163000 Sobic002G003200--Sobic008G163000 Sobic003G352800--Sobic006G166800 Sobic003G352800--Sobic009G162800 Sobic003G352800--Sobic007G027200 Sobic003G352800--Sobic002G003200 Sobic003G352800--Sobic009G241600 Sobic003G352800--Sobic008G059800 Sobic003G352800--Sobic009G153800 Sobic003G427900 Sobic003G427900 Sobic003G352800--Sobic003G427900 Sobic003G352800--Sobic010G196400
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.