Gene annotation
Transcriptome id Sobic.004G341300.2,Sobic.004G341300.3
Synonym Sb04g036880, KCS12
Functional annotation 3-ketoacyl-CoA synthase, putative, expressed
UniProt A0A194YT30
Pfam PF08541 PF08392
Panther DB PTHR31561 PTHR31561:SF7
NCBI CDD -
KEGG Orthology K15397; 3-ketoacyl-CoA synthase
Gene Ontology GO:0016747; transferase activity, transferring acyl groups other than amino-acyl groups GO:0008610lipid biosynthetic process GO:0016020membrane GO:0006633fatty acid biosynthetic process


Orthologs (automatic annotation)
TAIR AT2G28630 : 3-ketoacyl-CoA synthase 12
RAP-DB (Rice) LOC_Os02g56860.1 : 3-ketoacyl-CoA synthase, putative, expressed
MaizeGDB (Corn) Zm00025a052078 , Zm00025a002682 , Zm00025a022565 , Zm00025a017777 , Zm00025a021922
Brachypodium KQK01305 , PNT69424 , KQJ97060 , KQK21480 , KQK16807
Barley HORVU1Hr1G040420.4 , HORVU1Hr1G040420.1 , HORVU1Hr1G040420.2 , HORVU6Hr1G089730.1 , HORVU6Hr1G089730.2 , HORVU7Hr1G084610.10 , HORVU7Hr1G084610.11 , HORVU7Hr1G084610.1 , HORVU7Hr1G084610.2 , HORVU7Hr1G084610.3 , HORVU7Hr1G084610.4 , HORVU7Hr1G084610.5 , HORVU7Hr1G084610.6 , HORVU7Hr1G084610.7 , HORVU7Hr1G084610.8 , HORVU7Hr1G084610.9 , HORVU1Hr1G090730.1 , HORVU6Hr1G089750.2 , HORVU6Hr1G089750.1
Wheat TraesCS4D02G296400 , TraesCS1A02G152100 , TraesCS1D02G148900 , TraesCS4D02G277300 , TraesCS1B02G169500 , TraesCS4A02G025300 , TraesCS4B02G278800
Populus -


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cDNA sequences
Sobic.004G341300


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.005G006000 TMS membrane protein/tumour differentially expressed protein, putative, expressed -
2 Sobic.009G048600 - -
3 Sobic.006G005700 OsSCP18 - Putative Serine Carboxypeptidase homologue, expressed K09646: serine carboxypeptidase 1
4 Sobic.008G156100 ankyrin repeat domain-containing protein 44, putative, expressed -
5 Sobic.002G028201 - K10523: speckle-type POZ protein
6 Sobic.006G281132 - -
7 Sobic.009G146000 SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@galactosyltransferase, putative, expressed -
8 Sobic.003G367100 Homologous to Dof genes in Arabidopsis and rice.(PubMedID : 21161392)@dof zinc finger domain containing protein, putative, expressed -
9 Sobic.001G266600 LTPL37 - Protease inhibitor/seed storage/LTP family protein precursor, expressed -
10 Sobic.001G441700 glycosyl hydrolases family 16, putative, expressed K08235: xyloglucan:xyloglucosyl transferase
11 Sobic.002G039400 YABBY domain containing protein, putative, expressed -
12 Sobic.003G098100 aquaporin protein, putative, expressed K09874: aquaporin NIP
13 Sobic.007G162200 GDSL-like lipase/acylhydrolase, putative, expressed -
14 Sobic.009G153400 Homologous to Dof genes in Arabidopsis and rice.(PubMedID : 21161392)@dof zinc finger domain containing protein, putative, expressed -
15 Sobic.005G146300 Ser/Thr protein phosphatase family protein, putative, expressed K14379: tartrate-resistant acid phosphatase type 5
16 Sobic.003G045700 pleiotropic drug resistance protein, putative, expressed -
17 Sobic.010G195800 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@Cinnamoyl-CoA reductase family (At)(PubMedID : 27208977)@reductase, putative, expressed -
18 Sobic.010G050500 OsMADS5 - MADS-box family gene with MIKCc type-box, expressed -
19 Sobic.009G031400 AMP-binding enzyme, putative, expressed K01897: ACSL, long-chain acyl-CoA synthetase
20 Sobic.004G218100 Protein octadecanal decarbonylase CER1 (Os)(PubMedID : 27208977)@WAX2, putative, expressed K15404: K15404, aldehyde decarbonylase


Gene co-expression network
sample Sobic004G341300 Sobic004G341300 Sobic005G006000 Sobic005G006000 Sobic004G341300--Sobic005G006000 Sobic009G048600 Sobic009G048600 Sobic004G341300--Sobic009G048600 Sobic006G005700 Sobic006G005700 Sobic004G341300--Sobic006G005700 Sobic008G156100 Sobic008G156100 Sobic004G341300--Sobic008G156100 Sobic002G028201 Sobic002G028201 Sobic004G341300--Sobic002G028201 Sobic006G281132 Sobic006G281132 Sobic004G341300--Sobic006G281132 Sobic009G146000 Sobic009G146000 Sobic004G341300--Sobic009G146000 Sobic003G367100 Sobic003G367100 Sobic004G341300--Sobic003G367100 Sobic001G266600 Sobic001G266600 Sobic004G341300--Sobic001G266600 Sobic005G006000--Sobic008G156100 Sobic005G006000--Sobic002G028201 Sobic005G006000--Sobic006G281132 Sobic005G006000--Sobic009G048600 Sobic005G006000--Sobic009G146000 Sobic005G006000--Sobic001G266600 Sobic005G006000--Sobic006G005700 Sobic005G006000--Sobic003G367100 Sobic003G098100 Sobic003G098100 Sobic005G006000--Sobic003G098100 Sobic009G048600--Sobic001G266600 Sobic009G048600--Sobic005G006000 Sobic009G048600--Sobic008G156100 Sobic009G048600--Sobic002G028201 Sobic009G048600--Sobic006G281132 Sobic009G048600--Sobic006G005700 Sobic007G162200 Sobic007G162200 Sobic009G048600--Sobic007G162200 Sobic009G048600--Sobic009G146000 Sobic010G195800 Sobic010G195800 Sobic009G048600--Sobic010G195800 Sobic006G005700--Sobic009G048600 Sobic006G005700--Sobic005G006000 Sobic006G005700--Sobic001G266600 Sobic006G005700--Sobic008G156100 Sobic006G005700--Sobic002G028201 Sobic006G005700--Sobic006G281132 Sobic006G005700--Sobic009G146000 Sobic006G005700--Sobic003G367100 Sobic006G005700--Sobic007G162200 Sobic008G156100--Sobic002G028201 Sobic008G156100--Sobic006G281132 Sobic008G156100--Sobic005G006000 Sobic008G156100--Sobic009G146000 Sobic008G156100--Sobic009G048600 Sobic008G156100--Sobic006G005700 Sobic008G156100--Sobic001G266600 Sobic008G156100--Sobic003G367100 Sobic008G156100--Sobic003G098100 Sobic002G028201--Sobic008G156100 Sobic002G028201--Sobic006G281132 Sobic002G028201--Sobic005G006000 Sobic002G028201--Sobic009G146000 Sobic002G028201--Sobic009G048600 Sobic002G028201--Sobic006G005700 Sobic002G028201--Sobic001G266600 Sobic002G028201--Sobic003G367100 Sobic002G028201--Sobic003G098100 Sobic006G281132--Sobic002G028201 Sobic006G281132--Sobic008G156100 Sobic006G281132--Sobic005G006000 Sobic006G281132--Sobic009G146000 Sobic006G281132--Sobic009G048600 Sobic006G281132--Sobic006G005700 Sobic006G281132--Sobic001G266600 Sobic006G281132--Sobic003G367100 Sobic006G281132--Sobic003G098100 Sobic009G146000--Sobic006G281132 Sobic009G146000--Sobic002G028201 Sobic009G146000--Sobic008G156100 Sobic009G146000--Sobic005G006000 Sobic009G146000--Sobic003G098100 Sobic009G146000--Sobic009G048600 Sobic009G146000--Sobic003G367100 Sobic009G146000--Sobic006G005700 Sobic009G146000--Sobic001G266600 Sobic003G367100--Sobic006G281132 Sobic003G367100--Sobic002G028201 Sobic003G367100--Sobic008G156100 Sobic003G367100--Sobic005G006000 Sobic003G367100--Sobic009G146000 Sobic003G367100--Sobic009G048600 Sobic003G367100--Sobic003G098100 Sobic003G367100--Sobic006G005700 Sobic003G367100--Sobic001G266600 Sobic001G266600--Sobic009G048600 Sobic001G266600--Sobic007G162200 Sobic001G266600--Sobic005G006000 Sobic001G266600--Sobic010G195800 Sobic001G266600--Sobic006G005700 Sobic001G266600--Sobic008G156100 Sobic001G266600--Sobic002G028201 Sobic001G266600--Sobic006G281132 Sobic001G266600--Sobic009G146000
Octagon: transcription factors


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