Gene annotation
Transcriptome id Sobic.010G050500.1
Synonym SEP3, AGL9, Sb10g004390
Functional annotation OsMADS5 - MADS-box family gene with MIKCc type-box, expressed
UniProt C5Z4T9 , Q5PSQ3
Pfam PF00319 PF01486
Panther DB PTHR11945 PTHR11945:SF206
NCBI CDD KOG0014; MADS box transcription factor
KEGG Orthology -
Gene Ontology GO:0003677; DNA binding GO:0006355regulation of transcription, DNA-templated GO:0005634nucleus GO:0003700DNA-binding transcription factor activity


Orthologs (automatic annotation)
TAIR AT1G24260 : K-box region and MADS-box transcription factor family protein
RAP-DB (Rice) LOC_Os06g06750.1 : OsMADS5 - MADS-box family gene with MIKCc type-box, expressed
MaizeGDB (Corn) Zm00025a023522 , Zm00025a001297 , Zm00025a049936 , Zm00025a008194 , Zm00025a047585 , Zm00025a032331 , Zm00025a053064 , Zm00025a014307
Brachypodium KQK15335 , KQK15334 , KQK15336 , KQK19480 , KQK22883 , KQJ90931
Barley HORVU6Hr1G002330.14 , HORVU6Hr1G002330.15 , HORVU5Hr1G095710.11 , HORVU5Hr1G095710.10 , HORVU5Hr1G095710.13 , HORVU5Hr1G095710.12 , HORVU7Hr1G025700.11 , HORVU7Hr1G025700.10 , HORVU6Hr1G002270.1 , HORVU6Hr1G002270.2 , HORVU5Hr1G095710.9 , HORVU5Hr1G095710.8 , HORVU5Hr1G095710.1 , HORVU5Hr1G095710.3 , HORVU5Hr1G095710.5 , HORVU5Hr1G095710.4 , HORVU5Hr1G095710.6 , HORVU5Hr1G076400.4 , HORVU5Hr1G076400.5 , HORVU5Hr1G076400.2 , HORVU5Hr1G076400.3 , HORVU5Hr1G076400.1 , HORVU4Hr1G067680.8 , HORVU4Hr1G067680.3 , HORVU4Hr1G067680.2 , HORVU4Hr1G067680.1 , HORVU4Hr1G067680.7 , HORVU4Hr1G067680.6 , HORVU4Hr1G067680.5 , HORVU4Hr1G067680.4 , HORVU7Hr1G025700.7 , HORVU7Hr1G025700.6 , HORVU7Hr1G025700.5 , HORVU7Hr1G025700.4 , HORVU7Hr1G025700.3 , HORVU7Hr1G025700.2 , HORVU7Hr1G025700.1 , HORVU7Hr1G025700.8 , HORVU7Hr1G054220.4 , HORVU7Hr1G054220.5 , HORVU7Hr1G054220.1 , HORVU7Hr1G054220.2 , HORVU7Hr1G054220.3
Wheat TraesCS7A02G122100 , TraesCS7A02G122100 , TraesCS7D02G261600 , TraesCS7B02G020800 , TraesCS7D02G120500 , TraesCS4A02G028100 , TraesCS7B02G158600 , TraesCS7D02G120600 , TraesCS4D02G243700 , TraesCS4D02G243700 , TraesCS7B02G020900 , TraesCS7B02G021000 , TraesCS4B02G245700 , TraesCS4D02G276100 , TraesCS4A02G058900 , TraesCS4A02G058900 , TraesCS4B02G245800 , TraesCS7A02G122000 , TraesCS7D02G261600 , TraesCS7A02G260600 , TraesCS7A02G260600 , TraesCS4D02G245200 , TraesCS4A02G028200
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.006G184000 cytochrome P450, putative, expressed -
2 Sobic.001G185000 NBS-LRR type disease resistance protein Rps1-k-1, putative, expressed -
3 Sobic.006G281132 - -
4 Sobic.002G028201 - K10523: speckle-type POZ protein
5 Sobic.008G156100 ankyrin repeat domain-containing protein 44, putative, expressed -
6 Sobic.005G006000 TMS membrane protein/tumour differentially expressed protein, putative, expressed -
7 Sobic.009G146000 SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@galactosyltransferase, putative, expressed -
8 Sobic.004G346500 heavy metal-associated domain containing protein, expressed -
9 Sobic.001G121400 - -
10 Sobic.001G447800 OsFBO13 - F-box and other domain containing protein, expressed -
11 Sobic.003G090650 - -
12 Sobic.006G005700 OsSCP18 - Putative Serine Carboxypeptidase homologue, expressed K09646: serine carboxypeptidase 1
13 Sobic.004G341300 3-ketoacyl-CoA synthase, putative, expressed K15397: 3-ketoacyl-CoA synthase
14 Sobic.009G048600 - -
15 Sobic.003G367100 Homologous to Dof genes in Arabidopsis and rice.(PubMedID : 21161392)@dof zinc finger domain containing protein, putative, expressed -
16 Sobic.004G309700 OsMan03 - Endo-Beta-Mannanase, expressed K19355: mannan endo-1,4-beta-mannosidase
17 Sobic.001G266600 LTPL37 - Protease inhibitor/seed storage/LTP family protein precursor, expressed -
18 Sobic.006G005900 OsSCP18 - Putative Serine Carboxypeptidase homologue, expressed K09646: serine carboxypeptidase 1
19 Sobic.002G353100 expressed protein -
20 Sobic.003G098100 aquaporin protein, putative, expressed K09874: aquaporin NIP


Gene co-expression network
sample Sobic010G050500 Sobic010G050500 Sobic006G184000 Sobic006G184000 Sobic010G050500--Sobic006G184000 Sobic001G185000 Sobic001G185000 Sobic010G050500--Sobic001G185000 Sobic006G281132 Sobic006G281132 Sobic010G050500--Sobic006G281132 Sobic002G028201 Sobic002G028201 Sobic010G050500--Sobic002G028201 Sobic008G156100 Sobic008G156100 Sobic010G050500--Sobic008G156100 Sobic005G006000 Sobic005G006000 Sobic010G050500--Sobic005G006000 Sobic009G146000 Sobic009G146000 Sobic010G050500--Sobic009G146000 Sobic004G346500 Sobic004G346500 Sobic010G050500--Sobic004G346500 Sobic001G121400 Sobic001G121400 Sobic010G050500--Sobic001G121400 Sobic006G184000--Sobic010G050500 Sobic006G184000--Sobic001G185000 Sobic001G447800 Sobic001G447800 Sobic006G184000--Sobic001G447800 Sobic003G090650 Sobic003G090650 Sobic006G184000--Sobic003G090650 Sobic006G184000--Sobic004G346500 Sobic006G184000--Sobic006G281132 Sobic006G184000--Sobic002G028201 Sobic006G184000--Sobic008G156100 Sobic006G184000--Sobic009G146000 Sobic001G185000--Sobic006G184000 Sobic001G185000--Sobic010G050500 Sobic001G185000--Sobic001G447800 Sobic006G042500 Sobic006G042500 Sobic001G185000--Sobic006G042500 Sobic001G185000--Sobic003G090650 Sobic003G367100 Sobic003G367100 Sobic001G185000--Sobic003G367100 Sobic009G052300 Sobic009G052300 Sobic001G185000--Sobic009G052300 Sobic005G006500 Sobic005G006500 Sobic001G185000--Sobic005G006500 Sobic001G185000--Sobic006G281132 Sobic006G281132--Sobic002G028201 Sobic006G281132--Sobic008G156100 Sobic006G281132--Sobic005G006000 Sobic006G281132--Sobic009G146000 Sobic009G048600 Sobic009G048600 Sobic006G281132--Sobic009G048600 Sobic006G005700 Sobic006G005700 Sobic006G281132--Sobic006G005700 Sobic001G266600 Sobic001G266600 Sobic006G281132--Sobic001G266600 Sobic006G281132--Sobic003G367100 Sobic003G098100 Sobic003G098100 Sobic006G281132--Sobic003G098100 Sobic002G028201--Sobic008G156100 Sobic002G028201--Sobic006G281132 Sobic002G028201--Sobic005G006000 Sobic002G028201--Sobic009G146000 Sobic002G028201--Sobic009G048600 Sobic002G028201--Sobic006G005700 Sobic002G028201--Sobic001G266600 Sobic002G028201--Sobic003G367100 Sobic002G028201--Sobic003G098100 Sobic008G156100--Sobic002G028201 Sobic008G156100--Sobic006G281132 Sobic008G156100--Sobic005G006000 Sobic008G156100--Sobic009G146000 Sobic008G156100--Sobic009G048600 Sobic008G156100--Sobic006G005700 Sobic008G156100--Sobic001G266600 Sobic008G156100--Sobic003G367100 Sobic008G156100--Sobic003G098100 Sobic005G006000--Sobic008G156100 Sobic005G006000--Sobic002G028201 Sobic005G006000--Sobic006G281132 Sobic005G006000--Sobic009G048600 Sobic005G006000--Sobic009G146000 Sobic005G006000--Sobic001G266600 Sobic005G006000--Sobic006G005700 Sobic005G006000--Sobic003G367100 Sobic005G006000--Sobic003G098100 Sobic009G146000--Sobic006G281132 Sobic009G146000--Sobic002G028201 Sobic009G146000--Sobic008G156100 Sobic009G146000--Sobic005G006000 Sobic009G146000--Sobic003G098100 Sobic009G146000--Sobic009G048600 Sobic009G146000--Sobic003G367100 Sobic009G146000--Sobic006G005700 Sobic009G146000--Sobic001G266600 Sobic004G346500--Sobic005G006500 Sobic006G117900 Sobic006G117900 Sobic004G346500--Sobic006G117900 Sobic004G346500--Sobic006G184000 Sobic006G005800 Sobic006G005800 Sobic004G346500--Sobic006G005800 Sobic009G153900 Sobic009G153900 Sobic004G346500--Sobic009G153900 Sobic001G152400 Sobic001G152400 Sobic004G346500--Sobic001G152400 Sobic005G164000 Sobic005G164000 Sobic004G346500--Sobic005G164000 Sobic002G248300 Sobic002G248300 Sobic004G346500--Sobic002G248300 Sobic007G115400 Sobic007G115400 Sobic004G346500--Sobic007G115400 Sobic001G121400--Sobic004G346500 Sobic001G121400--Sobic006G184000 Sobic001G121400--Sobic010G050500 Sobic006G155600 Sobic006G155600 Sobic001G121400--Sobic006G155600 Sobic006G084900 Sobic006G084900 Sobic001G121400--Sobic006G084900 Sobic009G172000 Sobic009G172000 Sobic001G121400--Sobic009G172000 Sobic010G133300 Sobic010G133300 Sobic001G121400--Sobic010G133300 Sobic001G121400--Sobic001G185000 Sobic001G121400--Sobic009G153900
Octagon: transcription factors


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