Gene annotation
Transcriptome id Sobic.002G039400.1,Sobic.002G039400.2
Synonym Sb02g003390, YAB2
Functional annotation YABBY domain containing protein, putative, expressed
UniProt C5X9N5
Pfam PF09011
Panther DB PTHR31675 PTHR31675:SF9
NCBI CDD -
KEGG Orthology -
Gene Ontology GO:0007275; multicellular organism development


Orthologs (automatic annotation)
TAIR AT1G08465 : Plant-specific transcription factor YABBY family protein
RAP-DB (Rice) LOC_Os07g06620.1 : YABBY domain containing protein, putative, expressed
MaizeGDB (Corn) Zm00025a045054
Brachypodium -
Barley -
Wheat -
Populus -


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cDNA sequences
Sobic.002G039400


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.005G088500 integral membrane protein DUF6 containing protein, expressed -
2 Sobic.001G266600 LTPL37 - Protease inhibitor/seed storage/LTP family protein precursor, expressed -
3 Sobic.001G510200 estradiol 17-beta-dehydrogenase 12, putative, expressed K10251: HSD17B12, KAR, 17beta-estradiol 17-dehydrogenase / very-long-chain 3-oxoacyl-CoA reductase
4 Sobic.004G341300 3-ketoacyl-CoA synthase, putative, expressed K15397: 3-ketoacyl-CoA synthase
5 Sobic.007G162200 GDSL-like lipase/acylhydrolase, putative, expressed -
6 Sobic.010G195800 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@Cinnamoyl-CoA reductase family (At)(PubMedID : 27208977)@reductase, putative, expressed -
7 Sobic.008G087300 3-oxoacyl-reductase, chloroplast precursor, putative, expressed K00059: fabG, 3-oxoacyl-[acyl-carrier protein] reductase
8 Sobic.004G167000 POEI29 - Pollen Ole e I allergen and extensin family protein precursor, putative, expressed -
9 Sobic.006G005700 OsSCP18 - Putative Serine Carboxypeptidase homologue, expressed K09646: serine carboxypeptidase 1
10 Sobic.009G239800 DUF538 domain containing protein, putative, expressed -
11 Sobic.009G048600 - -
12 Sobic.008G008200 TMS membrane protein/tumour differentially expressed protein, putative, expressed -
13 Sobic.002G363200 saccharopine dehydrogenase, putative, expressed -
14 Sobic.010G124600 estradiol 17-beta-dehydrogenase 12, putative, expressed K10251: HSD17B12, KAR, 17beta-estradiol 17-dehydrogenase / very-long-chain 3-oxoacyl-CoA reductase
15 Sobic.001G221400 alcohol oxidase, putative, expressed K17756: long-chain-alcohol oxidase
16 Sobic.001G173100 cytochrome P450, putative, expressed -
17 Sobic.001G266900 LTPL37 - Protease inhibitor/seed storage/LTP family protein precursor, expressed -
18 Sobic.002G394700 gibberellin receptor GID1L2, putative, expressed -
19 Sobic.010G108200 3-ketoacyl-CoA synthase, putative, expressed K15397: 3-ketoacyl-CoA synthase
20 Sobic.007G068700 polyphenol oxidase, putative, expressed K00422: polyphenol oxidase


Gene co-expression network
sample Sobic002G039400 Sobic002G039400 Sobic005G088500 Sobic005G088500 Sobic002G039400--Sobic005G088500 Sobic001G266600 Sobic001G266600 Sobic002G039400--Sobic001G266600 Sobic001G510200 Sobic001G510200 Sobic002G039400--Sobic001G510200 Sobic004G341300 Sobic004G341300 Sobic002G039400--Sobic004G341300 Sobic007G162200 Sobic007G162200 Sobic002G039400--Sobic007G162200 Sobic010G195800 Sobic010G195800 Sobic002G039400--Sobic010G195800 Sobic008G087300 Sobic008G087300 Sobic002G039400--Sobic008G087300 Sobic004G167000 Sobic004G167000 Sobic002G039400--Sobic004G167000 Sobic006G005700 Sobic006G005700 Sobic002G039400--Sobic006G005700 Sobic005G088500--Sobic002G039400 Sobic005G135700 Sobic005G135700 Sobic005G088500--Sobic005G135700 Sobic002G394700 Sobic002G394700 Sobic005G088500--Sobic002G394700 Sobic006G046500 Sobic006G046500 Sobic005G088500--Sobic006G046500 Sobic010G108200 Sobic010G108200 Sobic005G088500--Sobic010G108200 Sobic009G109850 Sobic009G109850 Sobic005G088500--Sobic009G109850 Sobic005G088500--Sobic001G510200 Sobic006G125600 Sobic006G125600 Sobic005G088500--Sobic006G125600 Sobic003G071300 Sobic003G071300 Sobic005G088500--Sobic003G071300 Sobic009G048600 Sobic009G048600 Sobic001G266600--Sobic009G048600 Sobic001G266600--Sobic007G162200 Sobic005G006000 Sobic005G006000 Sobic001G266600--Sobic005G006000 Sobic001G266600--Sobic010G195800 Sobic001G266600--Sobic006G005700 Sobic008G156100 Sobic008G156100 Sobic001G266600--Sobic008G156100 Sobic002G028201 Sobic002G028201 Sobic001G266600--Sobic002G028201 Sobic006G281132 Sobic006G281132 Sobic001G266600--Sobic006G281132 Sobic009G146000 Sobic009G146000 Sobic001G266600--Sobic009G146000 Sobic007G027200 Sobic007G027200 Sobic001G510200--Sobic007G027200 Sobic006G166800 Sobic006G166800 Sobic001G510200--Sobic006G166800 Sobic001G510200--Sobic002G394700 Sobic001G221400 Sobic001G221400 Sobic001G510200--Sobic001G221400 Sobic001G510200--Sobic004G167000 Sobic001G510200--Sobic002G039400 Sobic001G510200--Sobic006G125600 Sobic001G510200--Sobic010G108200 Sobic008G008200 Sobic008G008200 Sobic001G510200--Sobic008G008200 Sobic004G341300--Sobic005G006000 Sobic004G341300--Sobic009G048600 Sobic004G341300--Sobic006G005700 Sobic004G341300--Sobic008G156100 Sobic004G341300--Sobic002G028201 Sobic004G341300--Sobic006G281132 Sobic004G341300--Sobic009G146000 Sobic003G367100 Sobic003G367100 Sobic004G341300--Sobic003G367100 Sobic004G341300--Sobic001G266600 Sobic007G162200--Sobic001G266600 Sobic007G162200--Sobic010G195800 Sobic007G162200--Sobic009G048600 Sobic007G162200--Sobic008G087300 Sobic007G162200--Sobic005G006000 Sobic007G162200--Sobic006G005700 Sobic007G162200--Sobic008G008200 Sobic007G162200--Sobic004G167000 Sobic009G239800 Sobic009G239800 Sobic007G162200--Sobic009G239800 Sobic010G195800--Sobic007G162200 Sobic010G195800--Sobic001G266600 Sobic010G195800--Sobic009G048600 Sobic010G195800--Sobic008G008200 Sobic010G195800--Sobic008G087300 Sobic007G068700 Sobic007G068700 Sobic010G195800--Sobic007G068700 Sobic010G195800--Sobic004G167000 Sobic010G195800--Sobic009G239800 Sobic005G110538 Sobic005G110538 Sobic010G195800--Sobic005G110538 Sobic008G087300--Sobic004G167000 Sobic001G266900 Sobic001G266900 Sobic008G087300--Sobic001G266900 Sobic008G087300--Sobic008G008200 Sobic010G180000 Sobic010G180000 Sobic008G087300--Sobic010G180000 Sobic008G138300 Sobic008G138300 Sobic008G087300--Sobic008G138300 Sobic010G159500 Sobic010G159500 Sobic008G087300--Sobic010G159500 Sobic008G087300--Sobic009G239800 Sobic003G239400 Sobic003G239400 Sobic008G087300--Sobic003G239400 Sobic008G126000 Sobic008G126000 Sobic008G087300--Sobic008G126000 Sobic004G167000--Sobic008G087300 Sobic004G167000--Sobic001G266900 Sobic004G167000--Sobic008G008200 Sobic004G167000--Sobic010G180000 Sobic004G167000--Sobic008G138300 Sobic004G167000--Sobic010G159500 Sobic007G064600 Sobic007G064600 Sobic004G167000--Sobic007G064600 Sobic004G167000--Sobic003G239400 Sobic003G040400 Sobic003G040400 Sobic004G167000--Sobic003G040400 Sobic006G005700--Sobic009G048600 Sobic006G005700--Sobic005G006000 Sobic006G005700--Sobic001G266600 Sobic006G005700--Sobic008G156100 Sobic006G005700--Sobic002G028201 Sobic006G005700--Sobic006G281132 Sobic006G005700--Sobic009G146000 Sobic006G005700--Sobic003G367100 Sobic006G005700--Sobic007G162200
Octagon: transcription factors


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