Gene annotation
Transcriptome id Sobic.005G088500.1
Synonym Sb05g007230
Functional annotation integral membrane protein DUF6 containing protein, expressed
UniProt A0A1Z5RIB6
Pfam PF00892
Panther DB PTHR31218 PTHR31218:SF26
NCBI CDD -
KEGG Orthology -
Gene Ontology GO:0016021; integral component of membrane GO:0016020membrane


Orthologs (automatic annotation)
TAIR AT5G07050 : nodulin MtN21 /EamA-like transporter family protein
RAP-DB (Rice) LOC_Os08g31130.1 : integral membrane protein DUF6 containing protein, expressed
MaizeGDB (Corn) Zm00025a015574
Brachypodium -
Barley -
Wheat TraesCS7B02G007600 , TraesCS7B02G007600 , TraesCS7D02G104900
Populus -


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cDNA sequences
Sobic.005G088500


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.002G039400 YABBY domain containing protein, putative, expressed -
2 Sobic.005G135700 chalcone and stilbene synthases, putative, expressed -
3 Sobic.002G394700 gibberellin receptor GID1L2, putative, expressed -
4 Sobic.006G046500 deoxyhypusine synthase, putative, expressed K00809: DHPS, deoxyhypusine synthase
5 Sobic.010G108200 3-ketoacyl-CoA synthase, putative, expressed K15397: 3-ketoacyl-CoA synthase
6 Sobic.009G109850 - -
7 Sobic.001G510200 estradiol 17-beta-dehydrogenase 12, putative, expressed K10251: HSD17B12, KAR, 17beta-estradiol 17-dehydrogenase / very-long-chain 3-oxoacyl-CoA reductase
8 Sobic.006G125600 oxidoreductase, short chain dehydrogenase/reductase family, putative, expressed K10251: HSD17B12, KAR, 17beta-estradiol 17-dehydrogenase / very-long-chain 3-oxoacyl-CoA reductase
9 Sobic.003G071300 expressed protein K10703: HACD, PHS1, very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase
10 Sobic.010G108600 3-ketoacyl-CoA synthase, putative, expressed K15397: 3-ketoacyl-CoA synthase
11 Sobic.001G147650 - -
12 Sobic.004G293800 thioesterase family protein, putative, expressed -
13 Sobic.007G027200 anthocyanidin 3-O-glucosyltransferase, putative, expressed -
14 Sobic.003G071100 expressed protein K10703: HACD, PHS1, very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase
15 Sobic.005G135400 chalcone synthase, putative, expressed -
16 Sobic.007G095000 cytochrome P450, putative, expressed -
17 Sobic.010G108301 - K15397: 3-ketoacyl-CoA synthase
18 Sobic.010G124500 estradiol 17-beta-dehydrogenase 12, putative, expressed K10251: HSD17B12, KAR, 17beta-estradiol 17-dehydrogenase / very-long-chain 3-oxoacyl-CoA reductase
19 Sobic.005G135800 chalcone and stilbene synthases, putative, expressed -
20 Sobic.007G138800 MYB family transcription factor, putative, expressed K09422: transcription factor MYB, plant


Gene co-expression network
sample Sobic005G088500 Sobic005G088500 Sobic002G039400 Sobic002G039400 Sobic005G088500--Sobic002G039400 Sobic005G135700 Sobic005G135700 Sobic005G088500--Sobic005G135700 Sobic002G394700 Sobic002G394700 Sobic005G088500--Sobic002G394700 Sobic006G046500 Sobic006G046500 Sobic005G088500--Sobic006G046500 Sobic010G108200 Sobic010G108200 Sobic005G088500--Sobic010G108200 Sobic009G109850 Sobic009G109850 Sobic005G088500--Sobic009G109850 Sobic001G510200 Sobic001G510200 Sobic005G088500--Sobic001G510200 Sobic006G125600 Sobic006G125600 Sobic005G088500--Sobic006G125600 Sobic003G071300 Sobic003G071300 Sobic005G088500--Sobic003G071300 Sobic002G039400--Sobic005G088500 Sobic001G266600 Sobic001G266600 Sobic002G039400--Sobic001G266600 Sobic002G039400--Sobic001G510200 Sobic004G341300 Sobic004G341300 Sobic002G039400--Sobic004G341300 Sobic007G162200 Sobic007G162200 Sobic002G039400--Sobic007G162200 Sobic010G195800 Sobic010G195800 Sobic002G039400--Sobic010G195800 Sobic008G087300 Sobic008G087300 Sobic002G039400--Sobic008G087300 Sobic004G167000 Sobic004G167000 Sobic002G039400--Sobic004G167000 Sobic006G005700 Sobic006G005700 Sobic002G039400--Sobic006G005700 Sobic005G135700--Sobic005G088500 Sobic010G108301 Sobic010G108301 Sobic005G135700--Sobic010G108301 Sobic005G135700--Sobic002G394700 Sobic002G267000 Sobic002G267000 Sobic005G135700--Sobic002G267000 Sobic007G138800 Sobic007G138800 Sobic005G135700--Sobic007G138800 Sobic010G108600 Sobic010G108600 Sobic005G135700--Sobic010G108600 Sobic005G135700--Sobic010G108200 Sobic001G173100 Sobic001G173100 Sobic005G135700--Sobic001G173100 Sobic005G135700--Sobic006G125600 Sobic002G394700--Sobic010G108200 Sobic002G394700--Sobic006G125600 Sobic002G394700--Sobic003G071300 Sobic007G095000 Sobic007G095000 Sobic002G394700--Sobic007G095000 Sobic010G124500 Sobic010G124500 Sobic002G394700--Sobic010G124500 Sobic003G071100 Sobic003G071100 Sobic002G394700--Sobic003G071100 Sobic005G135800 Sobic005G135800 Sobic002G394700--Sobic005G135800 Sobic005G135400 Sobic005G135400 Sobic002G394700--Sobic005G135400 Sobic002G394700--Sobic010G108600 Sobic006G046500--Sobic005G088500 Sobic003G020300 Sobic003G020300 Sobic006G046500--Sobic003G020300 Sobic006G046500--Sobic005G135700 Sobic006G046500--Sobic009G109850 Sobic006G046500--Sobic010G108200 Sobic006G046500--Sobic002G394700 Sobic006G245300 Sobic006G245300 Sobic006G046500--Sobic006G245300 Sobic001G147650 Sobic001G147650 Sobic006G046500--Sobic001G147650 Sobic006G046500--Sobic003G071300 Sobic010G108200--Sobic003G071300 Sobic010G108200--Sobic006G125600 Sobic010G108200--Sobic003G071100 Sobic010G108200--Sobic005G135400 Sobic010G108200--Sobic010G124500 Sobic004G293800 Sobic004G293800 Sobic010G108200--Sobic004G293800 Sobic010G108200--Sobic005G135800 Sobic010G108001 Sobic010G108001 Sobic010G108200--Sobic010G108001 Sobic010G108200--Sobic007G095000 Sobic009G109850--Sobic010G108200 Sobic009G109850--Sobic001G147650 Sobic010G159500 Sobic010G159500 Sobic009G109850--Sobic010G159500 Sobic009G109850--Sobic003G071300 Sobic009G109850--Sobic004G293800 Sobic009G109850--Sobic003G071100 Sobic007G073300 Sobic007G073300 Sobic009G109850--Sobic007G073300 Sobic009G109850--Sobic005G135400 Sobic009G109850--Sobic006G125600 Sobic007G027200 Sobic007G027200 Sobic001G510200--Sobic007G027200 Sobic006G166800 Sobic006G166800 Sobic001G510200--Sobic006G166800 Sobic001G510200--Sobic002G394700 Sobic001G221400 Sobic001G221400 Sobic001G510200--Sobic001G221400 Sobic001G510200--Sobic004G167000 Sobic001G510200--Sobic002G039400 Sobic001G510200--Sobic006G125600 Sobic001G510200--Sobic010G108200 Sobic008G008200 Sobic008G008200 Sobic001G510200--Sobic008G008200 Sobic006G125600--Sobic003G071300 Sobic006G125600--Sobic010G124500 Sobic006G125600--Sobic003G071100 Sobic006G125600--Sobic005G135800 Sobic006G125600--Sobic010G108200 Sobic006G125600--Sobic007G095000 Sobic006G125600--Sobic005G135400 Sobic006G125600--Sobic010G108001 Sobic006G125600--Sobic004G293800 Sobic003G071300--Sobic003G071100 Sobic003G071300--Sobic006G125600 Sobic003G071300--Sobic010G108200 Sobic003G071300--Sobic010G124500 Sobic003G071300--Sobic005G135800 Sobic003G071300--Sobic005G135400 Sobic003G071300--Sobic010G108001 Sobic003G071300--Sobic004G293800 Sobic003G071300--Sobic007G095000
Octagon: transcription factors


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