Gene annotation
Transcriptome id Sobic.006G125600.1
Synonym Sb06g020580, KCR1, ATKCR1, YBR159
Functional annotation oxidoreductase, short chain dehydrogenase/reductase family, putative, expressed
UniProt C5YAW1
Pfam PF00106
Panther DB PTHR24322 PTHR24322:SF591
NCBI CDD KOG1014; 17 beta-hydroxysteroid dehydrogenase type 3, HSD17B3
KEGG Orthology K10251; HSD17B12, KAR, 17beta-estradiol 17-dehydrogenase / very-long-chain 3-oxoacyl-CoA reductase
Gene Ontology GO:0016491; oxidoreductase activity GO:0008152metabolic process


Orthologs (automatic annotation)
TAIR AT1G67730 : beta-ketoacyl reductase 1
RAP-DB (Rice) LOC_Os04g40730.1 : oxidoreductase, short chain dehydrogenase/reductase family, putative, expressed
MaizeGDB (Corn) Zm00025a021292 , Zm00025a031859
Brachypodium PNT61320
Barley HORVU2Hr1G083780.21 , HORVU2Hr1G083780.20 , HORVU2Hr1G083780.23 , HORVU2Hr1G083780.22 , HORVU2Hr1G083810.1
Wheat TraesCS2D02G342100 , TraesCS2D02G342200 , TraesCS2A02G321300
Populus -


JBrowse

Open New Page


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.003G071300 expressed protein K10703: HACD, PHS1, very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase
2 Sobic.010G124500 estradiol 17-beta-dehydrogenase 12, putative, expressed K10251: HSD17B12, KAR, 17beta-estradiol 17-dehydrogenase / very-long-chain 3-oxoacyl-CoA reductase
3 Sobic.003G071100 expressed protein K10703: HACD, PHS1, very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase
4 Sobic.005G135800 chalcone and stilbene synthases, putative, expressed -
5 Sobic.010G108200 3-ketoacyl-CoA synthase, putative, expressed K15397: 3-ketoacyl-CoA synthase
6 Sobic.007G095000 cytochrome P450, putative, expressed -
7 Sobic.005G135400 chalcone synthase, putative, expressed -
8 Sobic.010G108001 - K15397: 3-ketoacyl-CoA synthase
9 Sobic.004G293800 thioesterase family protein, putative, expressed -
10 Sobic.001G332050 - -
11 Sobic.001G332050 - -
12 Sobic.001G332050 - -
13 Sobic.001G332050 - -
14 Sobic.001G332050 - -
15 Sobic.001G332050 - -
16 Sobic.001G332050 - -
17 Sobic.001G332050 - -
18 Sobic.001G332050 - -
19 Sobic.001G332050 - -
20 Sobic.001G332050 - -


Gene co-expression network
sample Sobic006G125600 Sobic006G125600 Sobic003G071300 Sobic003G071300 Sobic006G125600--Sobic003G071300 Sobic010G124500 Sobic010G124500 Sobic006G125600--Sobic010G124500 Sobic003G071100 Sobic003G071100 Sobic006G125600--Sobic003G071100 Sobic005G135800 Sobic005G135800 Sobic006G125600--Sobic005G135800 Sobic010G108200 Sobic010G108200 Sobic006G125600--Sobic010G108200 Sobic007G095000 Sobic007G095000 Sobic006G125600--Sobic007G095000 Sobic005G135400 Sobic005G135400 Sobic006G125600--Sobic005G135400 Sobic010G108001 Sobic010G108001 Sobic006G125600--Sobic010G108001 Sobic004G293800 Sobic004G293800 Sobic006G125600--Sobic004G293800 Sobic003G071300--Sobic003G071100 Sobic003G071300--Sobic006G125600 Sobic003G071300--Sobic010G108200 Sobic003G071300--Sobic010G124500 Sobic003G071300--Sobic005G135800 Sobic003G071300--Sobic005G135400 Sobic003G071300--Sobic010G108001 Sobic003G071300--Sobic004G293800 Sobic003G071300--Sobic007G095000 Sobic010G124500--Sobic005G135800 Sobic010G124500--Sobic003G071100 Sobic010G124500--Sobic010G108001 Sobic010G124500--Sobic003G071300 Sobic010G124500--Sobic006G125600 Sobic010G124500--Sobic004G293800 Sobic007G195500 Sobic007G195500 Sobic010G124500--Sobic007G195500 Sobic010G124500--Sobic005G135400 Sobic010G124500--Sobic007G095000 Sobic003G071100--Sobic010G124500 Sobic003G071100--Sobic005G135800 Sobic003G071100--Sobic010G108001 Sobic003G071100--Sobic003G071300 Sobic003G071100--Sobic004G293800 Sobic003G071100--Sobic005G135400 Sobic003G071100--Sobic006G125600 Sobic003G071100--Sobic007G195500 Sobic009G116300 Sobic009G116300 Sobic003G071100--Sobic009G116300 Sobic005G135800--Sobic010G124500 Sobic005G135800--Sobic003G071100 Sobic005G135800--Sobic010G108001 Sobic005G135800--Sobic003G071300 Sobic005G135800--Sobic004G293800 Sobic005G135800--Sobic007G195500 Sobic005G135800--Sobic006G125600 Sobic005G135800--Sobic005G135400 Sobic005G135800--Sobic009G116300 Sobic010G108200--Sobic003G071300 Sobic010G108200--Sobic006G125600 Sobic010G108200--Sobic003G071100 Sobic010G108200--Sobic005G135400 Sobic010G108200--Sobic010G124500 Sobic010G108200--Sobic004G293800 Sobic010G108200--Sobic005G135800 Sobic010G108200--Sobic010G108001 Sobic010G108200--Sobic007G095000 Sobic007G095000--Sobic006G125600 Sobic007G095000--Sobic005G135800 Sobic007G095000--Sobic010G124500 Sobic007G095000--Sobic003G071300 Sobic007G095000--Sobic003G071100 Sobic007G095000--Sobic010G108200 Sobic007G095000--Sobic010G108001 Sobic007G095000--Sobic005G135400 Sobic007G095000--Sobic004G293800 Sobic005G135400--Sobic003G071100 Sobic005G135400--Sobic003G071300 Sobic010G159500 Sobic010G159500 Sobic005G135400--Sobic010G159500 Sobic005G135400--Sobic010G108001 Sobic003G206300 Sobic003G206300 Sobic005G135400--Sobic003G206300 Sobic002G129600 Sobic002G129600 Sobic005G135400--Sobic002G129600 Sobic005G135400--Sobic009G116300 Sobic010G200000 Sobic010G200000 Sobic005G135400--Sobic010G200000 Sobic001G332050 Sobic001G332050 Sobic005G135400--Sobic001G332050 Sobic010G108001--Sobic003G071100 Sobic010G108001--Sobic005G135800 Sobic010G108001--Sobic007G195500 Sobic010G108001--Sobic004G293800 Sobic010G108001--Sobic010G124500 Sobic003G206000 Sobic003G206000 Sobic010G108001--Sobic003G206000 Sobic010G108001--Sobic009G116300 Sobic010G108001--Sobic010G200000 Sobic010G108001--Sobic001G332050 Sobic004G293800--Sobic010G108001 Sobic004G293800--Sobic003G071100 Sobic004G293800--Sobic005G135800 Sobic004G293800--Sobic007G195500 Sobic004G293800--Sobic010G124500 Sobic010G108100 Sobic010G108100 Sobic004G293800--Sobic010G108100 Sobic004G293800--Sobic003G071300 Sobic004G293800--Sobic005G135400 Sobic004G293800--Sobic010G108200
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.