Gene annotation
Transcriptome id Sobic.001G441700.1
Synonym Sb01g041510, ATXTH27, EXGT-A3, XTH27
Functional annotation glycosyl hydrolases family 16, putative, expressed
UniProt A0A1B6QPH7
Pfam PF06955 PF00722
Panther DB PTHR31062 PTHR31062:SF44
NCBI CDD -
KEGG Orthology K08235; xyloglucan:xyloglucosyl transferase
Gene Ontology GO:0016762; xyloglucan:xyloglucosyl transferase activity GO:0006073cellular glucan metabolic process GO:0005618cell wall GO:0005975carbohydrate metabolic process GO:0004553hydrolase activity, hydrolyzing O-glycosyl compounds


Orthologs (automatic annotation)
TAIR AT1G14720 : xyloglucan endotransglucosylase/hydrolase 28
RAP-DB (Rice) LOC_Os03g13570.1 : glycosyl hydrolases family 16, putative, expressed
MaizeGDB (Corn) Zm00025a034970 , Zm00025a052940 , Zm00025a046886
Brachypodium KQJ97938 , PNT64517 , KQK00866 , KQK22653 , KQJ96164 , KQJ90139
Barley HORVU5Hr1G123920.1 , HORVU5Hr1G123920.2 , HORVU5Hr1G123920.3 , HORVU6Hr1G067470.6 , HORVU6Hr1G067470.4 , HORVU6Hr1G067470.5 , HORVU6Hr1G067470.2 , HORVU6Hr1G067470.3 , HORVU6Hr1G067470.1 , HORVU4Hr1G064220.4 , HORVU4Hr1G064220.6 , HORVU4Hr1G064220.1 , HORVU4Hr1G064220.2 , HORVU4Hr1G064220.3 , HORVU5Hr1G060340.6 , HORVU5Hr1G060340.7 , HORVU5Hr1G060340.4 , HORVU5Hr1G060340.5 , HORVU5Hr1G060340.3 , HORVU5Hr1G060340.1 , HORVU0Hr1G021280.1 , HORVU0Hr1G021280.3 , HORVU0Hr1G021280.2
Wheat TraesCSU02G018400 , TraesCS6B02G293500 , TraesCS1D02G199300 , TraesCS4B02G229500 , TraesCS6A02G088000 , TraesCS1A02G195900 , TraesCS4A02G073300 , TraesCS4A02G073300 , TraesCS1B02G210500 , TraesCS4D02G230600 , TraesCS5B02G202000 , TraesCS6A02G266100 , TraesCS5A02G203300 , TraesCS5D02G209700 , TraesCS6B02G110400
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.004G341300 3-ketoacyl-CoA synthase, putative, expressed K15397: 3-ketoacyl-CoA synthase
2 Sobic.003G045700 pleiotropic drug resistance protein, putative, expressed -
3 Sobic.002G039400 YABBY domain containing protein, putative, expressed -
4 Sobic.010G233900 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@Os6bglu25 - beta-glucosidase homologue, similar to Os3bglu6, expressed K01188: beta-glucosidase
5 Sobic.010G231600 cytochrome P450, putative, expressed -
6 Sobic.003G183800 MYB family transcription factor, putative, expressed K09422: transcription factor MYB, plant
7 Sobic.005G146300 Ser/Thr protein phosphatase family protein, putative, expressed K14379: tartrate-resistant acid phosphatase type 5
8 Sobic.001G266600 LTPL37 - Protease inhibitor/seed storage/LTP family protein precursor, expressed -
9 Sobic.001G207600 white-brown complex homolog protein 11, putative, expressed -
10 Sobic.006G005700 OsSCP18 - Putative Serine Carboxypeptidase homologue, expressed K09646: serine carboxypeptidase 1
11 Sobic.009G048600 - -
12 Sobic.003G367100 Homologous to Dof genes in Arabidopsis and rice.(PubMedID : 21161392)@dof zinc finger domain containing protein, putative, expressed -
13 Sobic.004G218100 Protein octadecanal decarbonylase CER1 (Os)(PubMedID : 27208977)@WAX2, putative, expressed K15404: K15404, aldehyde decarbonylase
14 Sobic.005G006000 TMS membrane protein/tumour differentially expressed protein, putative, expressed -
15 Sobic.009G153400 Homologous to Dof genes in Arabidopsis and rice.(PubMedID : 21161392)@dof zinc finger domain containing protein, putative, expressed -
16 Sobic.008G156100 ankyrin repeat domain-containing protein 44, putative, expressed -
17 Sobic.002G028201 - K10523: speckle-type POZ protein
18 Sobic.006G281132 - -
19 Sobic.009G173200 Homologous to EPF/EPFL genes in Arabidopsis. Modelling of protein structure.(PubMedID : 23755192)@expressed protein -
20 Sobic.007G162200 GDSL-like lipase/acylhydrolase, putative, expressed -


Gene co-expression network
sample Sobic001G441700 Sobic001G441700 Sobic004G341300 Sobic004G341300 Sobic001G441700--Sobic004G341300 Sobic003G045700 Sobic003G045700 Sobic001G441700--Sobic003G045700 Sobic002G039400 Sobic002G039400 Sobic001G441700--Sobic002G039400 Sobic010G233900 Sobic010G233900 Sobic001G441700--Sobic010G233900 Sobic010G231600 Sobic010G231600 Sobic001G441700--Sobic010G231600 Sobic003G183800 Sobic003G183800 Sobic001G441700--Sobic003G183800 Sobic005G146300 Sobic005G146300 Sobic001G441700--Sobic005G146300 Sobic001G266600 Sobic001G266600 Sobic001G441700--Sobic001G266600 Sobic001G207600 Sobic001G207600 Sobic001G441700--Sobic001G207600 Sobic005G006000 Sobic005G006000 Sobic004G341300--Sobic005G006000 Sobic009G048600 Sobic009G048600 Sobic004G341300--Sobic009G048600 Sobic006G005700 Sobic006G005700 Sobic004G341300--Sobic006G005700 Sobic008G156100 Sobic008G156100 Sobic004G341300--Sobic008G156100 Sobic002G028201 Sobic002G028201 Sobic004G341300--Sobic002G028201 Sobic006G281132 Sobic006G281132 Sobic004G341300--Sobic006G281132 Sobic009G146000 Sobic009G146000 Sobic004G341300--Sobic009G146000 Sobic003G367100 Sobic003G367100 Sobic004G341300--Sobic003G367100 Sobic004G341300--Sobic001G266600 Sobic003G045700--Sobic010G231600 Sobic003G045700--Sobic001G207600 Sobic004G283800 Sobic004G283800 Sobic003G045700--Sobic004G283800 Sobic005G156100 Sobic005G156100 Sobic003G045700--Sobic005G156100 Sobic009G031400 Sobic009G031400 Sobic003G045700--Sobic009G031400 Sobic003G045700--Sobic001G441700 Sobic006G125800 Sobic006G125800 Sobic003G045700--Sobic006G125800 Sobic001G023500 Sobic001G023500 Sobic003G045700--Sobic001G023500 Sobic009G173200 Sobic009G173200 Sobic003G045700--Sobic009G173200 Sobic005G088500 Sobic005G088500 Sobic002G039400--Sobic005G088500 Sobic002G039400--Sobic001G266600 Sobic001G510200 Sobic001G510200 Sobic002G039400--Sobic001G510200 Sobic002G039400--Sobic004G341300 Sobic007G162200 Sobic007G162200 Sobic002G039400--Sobic007G162200 Sobic010G195800 Sobic010G195800 Sobic002G039400--Sobic010G195800 Sobic008G087300 Sobic008G087300 Sobic002G039400--Sobic008G087300 Sobic004G167000 Sobic004G167000 Sobic002G039400--Sobic004G167000 Sobic002G039400--Sobic006G005700 Sobic010G233900--Sobic001G441700 Sobic010G233900--Sobic004G341300 Sobic010G199700 Sobic010G199700 Sobic010G233900--Sobic010G199700 Sobic010G233900--Sobic002G039400 Sobic003G198048 Sobic003G198048 Sobic010G233900--Sobic003G198048 Sobic010G233900--Sobic003G045700 Sobic010G124600 Sobic010G124600 Sobic010G233900--Sobic010G124600 Sobic007G027200 Sobic007G027200 Sobic010G233900--Sobic007G027200 Sobic001G538000 Sobic001G538000 Sobic010G233900--Sobic001G538000 Sobic010G231600--Sobic003G045700 Sobic010G231600--Sobic001G207600 Sobic006G014400 Sobic006G014400 Sobic010G231600--Sobic006G014400 Sobic010G231600--Sobic001G023500 Sobic010G231600--Sobic004G283800 Sobic010G231600--Sobic001G441700 Sobic010G231600--Sobic009G031400 Sobic010G231600--Sobic009G173200 Sobic001G266200 Sobic001G266200 Sobic010G231600--Sobic001G266200 Sobic008G145300 Sobic008G145300 Sobic003G183800--Sobic008G145300 Sobic003G183800--Sobic001G441700 Sobic003G183800--Sobic005G146300 Sobic007G033300 Sobic007G033300 Sobic003G183800--Sobic007G033300 Sobic003G183800--Sobic002G039400 Sobic005G169700 Sobic005G169700 Sobic003G183800--Sobic005G169700 Sobic003G183800--Sobic004G341300 Sobic003G183800--Sobic005G088500 Sobic006G245300 Sobic006G245300 Sobic003G183800--Sobic006G245300 Sobic005G146300--Sobic007G033300 Sobic001G066900 Sobic001G066900 Sobic005G146300--Sobic001G066900 Sobic005G146300--Sobic009G031400 Sobic005G146300--Sobic004G341300 Sobic005G146300--Sobic002G039400 Sobic005G146300--Sobic003G045700 Sobic005G146300--Sobic001G441700 Sobic003G430000 Sobic003G430000 Sobic005G146300--Sobic003G430000 Sobic005G146300--Sobic003G183800 Sobic001G266600--Sobic009G048600 Sobic001G266600--Sobic007G162200 Sobic001G266600--Sobic005G006000 Sobic001G266600--Sobic010G195800 Sobic001G266600--Sobic006G005700 Sobic001G266600--Sobic008G156100 Sobic001G266600--Sobic002G028201 Sobic001G266600--Sobic006G281132 Sobic001G266600--Sobic009G146000 Sobic001G207600--Sobic003G045700 Sobic001G207600--Sobic004G283800 Sobic004G274600 Sobic004G274600 Sobic001G207600--Sobic004G274600 Sobic009G174100 Sobic009G174100 Sobic001G207600--Sobic009G174100 Sobic001G207600--Sobic010G231600 Sobic010G020600 Sobic010G020600 Sobic001G207600--Sobic010G020600 Sobic001G207600--Sobic005G156100 Sobic008G097700 Sobic008G097700 Sobic001G207600--Sobic008G097700 Sobic003G339600 Sobic003G339600 Sobic001G207600--Sobic003G339600
Octagon: transcription factors


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