Gene annotation
Transcriptome id Sobic.001G162400.1
Synonym Sb01g014210
Functional annotation MATE efflux family protein, putative, expressed
UniProt C5WS63
Pfam PF01554
Panther DB PTHR11206 PTHR11206:SF133
NCBI CDD KOG1347; Uncharacterized membrane protein, predicted efflux pump
KEGG Orthology K03327; TC.MATE, SLC47A, norM, mdtK, multidrug resistance protein, MATE family
Gene Ontology GO:0016020; membrane GO:0015297antiporter activity GO:0006855drug transmembrane transport


Orthologs (automatic annotation)
TAIR AT3G26590 : MATE efflux family protein
RAP-DB (Rice) LOC_Os03g42830.1 : MATE efflux family protein, putative, expressed
MaizeGDB (Corn) Zm00025a007368
Brachypodium PNT74408 , KQK01430 , KQK14108 , KQJ96421 , KQJ96420
Barley HORVU4Hr1G011690.4 , HORVU4Hr1G011690.7 , HORVU4Hr1G011690.6 , HORVU4Hr1G011690.1 , HORVU4Hr1G011690.3 , HORVU4Hr1G011690.2 , HORVU4Hr1G011690.9 , HORVU4Hr1G011690.8 , HORVU4Hr1G011690.11 , HORVU4Hr1G011690.10 , HORVU4Hr1G011690.12 , HORVU4Hr1G011690.14 , HORVU2Hr1G117540.10 , HORVU2Hr1G117540.3 , HORVU2Hr1G117540.5 , HORVU2Hr1G117540.7 , HORVU2Hr1G117540.2 , HORVU2Hr1G117540.1 , HORVU2Hr1G117540.6 , HORVU2Hr1G117540.4 , HORVU2Hr1G117540.8 , HORVU2Hr1G117540.9
Wheat TraesCS4B02G070100 , TraesCS4B02G070000 , TraesCS3B02G039300 , TraesCS3A02G044500 , TraesCS4D02G068800 , TraesCS3A02G044500 , TraesCS3D02G036400 , TraesCS4A02G245300 , TraesCS4A02G245400 , TraesCS2A02G534900 , TraesCS4D02G068900 , TraesCS7D02G384100 , TraesCSU02G150400
Populus -


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cDNA sequences
Sobic.001G162400


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G502100 inorganic phosphate transporter, putative, expressed K08176: MFS transporter, PHS family, inorganic phosphate transporter
2 Sobic.009G176600 cytokinin-O-glucosyltransferase 2, putative, expressed -
3 Sobic.010G094400 "cell wall modification, deposition of casparian strips, endodermis, transmembrane"(PubMedID : 24920445)@membrane associated DUF588 domain containing protein, putative, expressed -
4 Sobic.002G123400 OsRR7 type-A response regulator, expressed K14492: two-component response regulator ARR-A family
5 Sobic.003G354850 - -
6 Sobic.005G212300 MBTB24 - Bric-a-Brac, Tramtrack, Broad Complex BTB domain with Meprin and TRAF Homology MATH domain, expressed K10523: speckle-type POZ protein
7 Sobic.002G100300 OsFBD15 - F-box and FBD domain containing protein, expressed -
8 Sobic.003G090200 seven in absentia protein family domain containing protein, expressed -
9 Sobic.003G340000 expressed protein -
10 Sobic.006G018000 expressed protein -
11 Sobic.005G006900 RNA recognition motif containing protein, putative, expressed -
12 Sobic.002G298500 LTPL63 - Protease inhibitor/seed storage/LTP family protein precursor, putative, expressed -
13 Sobic.006G124500 Regulator of chromosome condensation domain containing protein, expressed -
14 Sobic.008G071700 - -
15 Sobic.006G015700 expressed protein -
16 Sobic.001G242200 MBTB35 - Bric-a-Brac, Tramtrack, Broad Complex BTB domain with Meprin and TRAF Homology MATH domain, expressed K10523: speckle-type POZ protein
17 Sobic.004G254700 plastocyanin-like domain containing protein, putative, expressed -
18 Sobic.002G298600 LTPL63 - Protease inhibitor/seed storage/LTP family protein precursor, putative, expressed -
19 Sobic.002G013550 - K08770: ubiquitin C
20 Sobic.009G240500 lipase class 3 family protein, putative, expressed -


Gene co-expression network
sample Sobic001G162400 Sobic001G162400 Sobic001G502100 Sobic001G502100 Sobic001G162400--Sobic001G502100 Sobic009G176600 Sobic009G176600 Sobic001G162400--Sobic009G176600 Sobic010G094400 Sobic010G094400 Sobic001G162400--Sobic010G094400 Sobic002G123400 Sobic002G123400 Sobic001G162400--Sobic002G123400 Sobic003G354850 Sobic003G354850 Sobic001G162400--Sobic003G354850 Sobic005G212300 Sobic005G212300 Sobic001G162400--Sobic005G212300 Sobic002G100300 Sobic002G100300 Sobic001G162400--Sobic002G100300 Sobic003G090200 Sobic003G090200 Sobic001G162400--Sobic003G090200 Sobic003G340000 Sobic003G340000 Sobic001G162400--Sobic003G340000 Sobic002G298600 Sobic002G298600 Sobic001G502100--Sobic002G298600 Sobic004G256100 Sobic004G256100 Sobic001G502100--Sobic004G256100 Sobic001G103600 Sobic001G103600 Sobic001G502100--Sobic001G103600 Sobic005G006900 Sobic005G006900 Sobic001G502100--Sobic005G006900 Sobic004G254700 Sobic004G254700 Sobic001G502100--Sobic004G254700 Sobic008G071700 Sobic008G071700 Sobic001G502100--Sobic008G071700 Sobic006G276600 Sobic006G276600 Sobic001G502100--Sobic006G276600 Sobic002G019300 Sobic002G019300 Sobic001G502100--Sobic002G019300 Sobic009G149100 Sobic009G149100 Sobic001G502100--Sobic009G149100 Sobic009G176600--Sobic010G094400 Sobic009G176600--Sobic001G502100 Sobic009G176600--Sobic003G340000 Sobic004G247500 Sobic004G247500 Sobic009G176600--Sobic004G247500 Sobic001G015000 Sobic001G015000 Sobic009G176600--Sobic001G015000 Sobic009G176600--Sobic003G090200 Sobic009G176600--Sobic002G100300 Sobic009G176600--Sobic005G212300 Sobic009G176600--Sobic003G354850 Sobic010G094400--Sobic009G176600 Sobic010G094400--Sobic003G340000 Sobic010G094400--Sobic001G502100 Sobic010G094400--Sobic003G354850 Sobic010G094400--Sobic005G212300 Sobic010G094400--Sobic002G100300 Sobic010G094400--Sobic003G090200 Sobic006G018000 Sobic006G018000 Sobic010G094400--Sobic006G018000 Sobic010G094400--Sobic002G123400 Sobic002G123400--Sobic003G090200 Sobic002G123400--Sobic002G100300 Sobic002G123400--Sobic005G212300 Sobic002G123400--Sobic003G354850 Sobic002G123400--Sobic005G006900 Sobic002G123400--Sobic008G071700 Sobic002G123400--Sobic006G018000 Sobic002G123400--Sobic004G254700 Sobic002G298500 Sobic002G298500 Sobic002G123400--Sobic002G298500 Sobic003G354850--Sobic005G212300 Sobic003G354850--Sobic002G100300 Sobic003G354850--Sobic003G090200 Sobic003G354850--Sobic006G018000 Sobic003G354850--Sobic002G123400 Sobic003G354850--Sobic005G006900 Sobic003G354850--Sobic008G071700 Sobic003G354850--Sobic002G298500 Sobic003G354850--Sobic004G254700 Sobic005G212300--Sobic002G100300 Sobic005G212300--Sobic003G354850 Sobic005G212300--Sobic003G090200 Sobic005G212300--Sobic006G018000 Sobic005G212300--Sobic002G123400 Sobic005G212300--Sobic005G006900 Sobic005G212300--Sobic008G071700 Sobic005G212300--Sobic002G298500 Sobic005G212300--Sobic004G254700 Sobic002G100300--Sobic005G212300 Sobic002G100300--Sobic003G354850 Sobic002G100300--Sobic003G090200 Sobic002G100300--Sobic006G018000 Sobic002G100300--Sobic002G123400 Sobic002G100300--Sobic005G006900 Sobic002G100300--Sobic008G071700 Sobic002G100300--Sobic002G298500 Sobic002G100300--Sobic004G254700 Sobic003G090200--Sobic002G100300 Sobic003G090200--Sobic005G212300 Sobic003G090200--Sobic003G354850 Sobic003G090200--Sobic006G018000 Sobic003G090200--Sobic002G123400 Sobic003G090200--Sobic005G006900 Sobic003G090200--Sobic008G071700 Sobic003G090200--Sobic002G298500 Sobic003G090200--Sobic004G254700 Sobic003G340000--Sobic010G094400 Sobic003G340000--Sobic004G247500 Sobic003G340000--Sobic001G502100 Sobic003G340000--Sobic009G176600 Sobic001G303900 Sobic001G303900 Sobic003G340000--Sobic001G303900 Sobic001G342101 Sobic001G342101 Sobic003G340000--Sobic001G342101 Sobic005G074300 Sobic005G074300 Sobic003G340000--Sobic005G074300 Sobic008G050900 Sobic008G050900 Sobic003G340000--Sobic008G050900 Sobic003G340000--Sobic001G015000
Octagon: transcription factors


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