Gene annotation
Transcriptome id Sobic.010G094400.1
Synonym Sb10g008220, Casparian strip membrane protein 3, SbCASP3
Functional annotation "cell wall modification, deposition of casparian strips, endodermis, transmembrane" (PubMedID : 24920445)
membrane associated DUF588 domain containing protein, putative, expressed
UniProt A0A194YI75 , C5Z7E3
Pfam PF04535
Panther DB PTHR11615 PTHR11615:SF141
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT5G15290 : Uncharacterised protein family (UPF0497)
RAP-DB (Rice) LOC_Os06g12500.1 : membrane associated DUF588 domain containing protein, putative, expressed
MaizeGDB (Corn) Zm00025a049453
Brachypodium KQK18846
Barley -
Wheat -
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.009G176600 cytokinin-O-glucosyltransferase 2, putative, expressed -
2 Sobic.003G340000 expressed protein -
3 Sobic.001G502100 inorganic phosphate transporter, putative, expressed K08176: MFS transporter, PHS family, inorganic phosphate transporter
4 Sobic.003G354850 - -
5 Sobic.005G212300 MBTB24 - Bric-a-Brac, Tramtrack, Broad Complex BTB domain with Meprin and TRAF Homology MATH domain, expressed K10523: speckle-type POZ protein
6 Sobic.002G100300 OsFBD15 - F-box and FBD domain containing protein, expressed -
7 Sobic.003G090200 seven in absentia protein family domain containing protein, expressed -
8 Sobic.006G018000 expressed protein -
9 Sobic.002G123400 OsRR7 type-A response regulator, expressed K14492: two-component response regulator ARR-A family
10 Sobic.002G298500 LTPL63 - Protease inhibitor/seed storage/LTP family protein precursor, putative, expressed -
11 Sobic.005G006900 RNA recognition motif containing protein, putative, expressed -
12 Sobic.008G071700 - -
13 Sobic.001G015000 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@nuclear antigen, putative, expressed -
14 Sobic.006G124500 Regulator of chromosome condensation domain containing protein, expressed -
15 Sobic.004G254700 plastocyanin-like domain containing protein, putative, expressed -
16 Sobic.002G019300 OsFBL33 - F-box domain and LRR containing protein, expressed -
17 Sobic.002G298600 LTPL63 - Protease inhibitor/seed storage/LTP family protein precursor, putative, expressed -
18 Sobic.006G276600 auxin-induced protein 5NG4, putative, expressed -
19 Sobic.006G015700 expressed protein -
20 Sobic.004G022366 - -


Gene co-expression network
sample Sobic010G094400 Sobic010G094400 Sobic009G176600 Sobic009G176600 Sobic010G094400--Sobic009G176600 Sobic003G340000 Sobic003G340000 Sobic010G094400--Sobic003G340000 Sobic001G502100 Sobic001G502100 Sobic010G094400--Sobic001G502100 Sobic003G354850 Sobic003G354850 Sobic010G094400--Sobic003G354850 Sobic005G212300 Sobic005G212300 Sobic010G094400--Sobic005G212300 Sobic002G100300 Sobic002G100300 Sobic010G094400--Sobic002G100300 Sobic003G090200 Sobic003G090200 Sobic010G094400--Sobic003G090200 Sobic006G018000 Sobic006G018000 Sobic010G094400--Sobic006G018000 Sobic002G123400 Sobic002G123400 Sobic010G094400--Sobic002G123400 Sobic009G176600--Sobic010G094400 Sobic009G176600--Sobic001G502100 Sobic009G176600--Sobic003G340000 Sobic004G247500 Sobic004G247500 Sobic009G176600--Sobic004G247500 Sobic001G015000 Sobic001G015000 Sobic009G176600--Sobic001G015000 Sobic009G176600--Sobic003G090200 Sobic009G176600--Sobic002G100300 Sobic009G176600--Sobic005G212300 Sobic009G176600--Sobic003G354850 Sobic003G340000--Sobic010G094400 Sobic003G340000--Sobic004G247500 Sobic003G340000--Sobic001G502100 Sobic003G340000--Sobic009G176600 Sobic001G303900 Sobic001G303900 Sobic003G340000--Sobic001G303900 Sobic001G342101 Sobic001G342101 Sobic003G340000--Sobic001G342101 Sobic005G074300 Sobic005G074300 Sobic003G340000--Sobic005G074300 Sobic008G050900 Sobic008G050900 Sobic003G340000--Sobic008G050900 Sobic003G340000--Sobic001G015000 Sobic002G298600 Sobic002G298600 Sobic001G502100--Sobic002G298600 Sobic004G256100 Sobic004G256100 Sobic001G502100--Sobic004G256100 Sobic001G103600 Sobic001G103600 Sobic001G502100--Sobic001G103600 Sobic005G006900 Sobic005G006900 Sobic001G502100--Sobic005G006900 Sobic004G254700 Sobic004G254700 Sobic001G502100--Sobic004G254700 Sobic008G071700 Sobic008G071700 Sobic001G502100--Sobic008G071700 Sobic006G276600 Sobic006G276600 Sobic001G502100--Sobic006G276600 Sobic002G019300 Sobic002G019300 Sobic001G502100--Sobic002G019300 Sobic009G149100 Sobic009G149100 Sobic001G502100--Sobic009G149100 Sobic003G354850--Sobic005G212300 Sobic003G354850--Sobic002G100300 Sobic003G354850--Sobic003G090200 Sobic003G354850--Sobic006G018000 Sobic003G354850--Sobic002G123400 Sobic003G354850--Sobic005G006900 Sobic003G354850--Sobic008G071700 Sobic002G298500 Sobic002G298500 Sobic003G354850--Sobic002G298500 Sobic003G354850--Sobic004G254700 Sobic005G212300--Sobic002G100300 Sobic005G212300--Sobic003G354850 Sobic005G212300--Sobic003G090200 Sobic005G212300--Sobic006G018000 Sobic005G212300--Sobic002G123400 Sobic005G212300--Sobic005G006900 Sobic005G212300--Sobic008G071700 Sobic005G212300--Sobic002G298500 Sobic005G212300--Sobic004G254700 Sobic002G100300--Sobic005G212300 Sobic002G100300--Sobic003G354850 Sobic002G100300--Sobic003G090200 Sobic002G100300--Sobic006G018000 Sobic002G100300--Sobic002G123400 Sobic002G100300--Sobic005G006900 Sobic002G100300--Sobic008G071700 Sobic002G100300--Sobic002G298500 Sobic002G100300--Sobic004G254700 Sobic003G090200--Sobic002G100300 Sobic003G090200--Sobic005G212300 Sobic003G090200--Sobic003G354850 Sobic003G090200--Sobic006G018000 Sobic003G090200--Sobic002G123400 Sobic003G090200--Sobic005G006900 Sobic003G090200--Sobic008G071700 Sobic003G090200--Sobic002G298500 Sobic003G090200--Sobic004G254700 Sobic006G018000--Sobic002G298500 Sobic006G018000--Sobic003G354850 Sobic006G018000--Sobic005G212300 Sobic006G018000--Sobic002G100300 Sobic006G018000--Sobic003G090200 Sobic006G018000--Sobic002G123400 Sobic001G355300 Sobic001G355300 Sobic006G018000--Sobic001G355300 Sobic009G067100 Sobic009G067100 Sobic006G018000--Sobic009G067100 Sobic003G180700 Sobic003G180700 Sobic006G018000--Sobic003G180700 Sobic002G123400--Sobic003G090200 Sobic002G123400--Sobic002G100300 Sobic002G123400--Sobic005G212300 Sobic002G123400--Sobic003G354850 Sobic002G123400--Sobic005G006900 Sobic002G123400--Sobic008G071700 Sobic002G123400--Sobic006G018000 Sobic002G123400--Sobic004G254700 Sobic002G123400--Sobic002G298500
Octagon: transcription factors


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