Gene annotation
Transcriptome id Sobic.003G396800.2,Sobic.003G396800.1,Sobic.003G396800.3
Synonym Sb03g043360
Functional annotation expressed protein
UniProt C5XFK4
Pfam PF10213
Panther DB PTHR13490
NCBI CDD -
KEGG Orthology K17413; small subunit ribosomal protein S35
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT3G18240 : Ribosomal protein S24/S35, mitochondrial
RAP-DB (Rice) LOC_Os08g40230.1 : expressed protein
MaizeGDB (Corn) Zm00025a026341
Brachypodium KQJ94568
Barley HORVU3Hr1G073590.1 , HORVU3Hr1G073590.2
Wheat TraesCS3B02G332200 , TraesCS3D02G297700 , TraesCS3A02G304300
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G143900 expressed protein -
2 Sobic.009G228600 CHCH domain containing protein, expressed K18183: cytochrome c oxidase assembly protein subunit 19
3 Sobic.009G063800 ATP10 protein, expressed K18192: mitochondrial ATPase complex subunit ATP10
4 Sobic.002G182000 cwfJ-like family protein, putative, expressed -
5 Sobic.003G120700 glycosyl transferase, group 1 domain containing protein, expressed -
6 Sobic.001G203600 PPR repeat domain containing protein, putative, expressed -
7 Sobic.001G033600 pentatricopeptide, putative, expressed -
8 Sobic.002G193500 malonyl-CoA decarboxylase, mitochondrial precursor, putative, expressed K01578: malonyl-CoA decarboxylase
9 Sobic.003G004800 ATP binding protein, putative, expressed -
10 Sobic.007G086600 indole-3-glycerol phosphate synthase, chloroplast precursor, putative, expressed K01609: indole-3-glycerol phosphate synthase
11 Sobic.009G042000 expressed protein -
12 Sobic.010G086300 chaperone protein dnaJ, putative, expressed K03686: molecular chaperone DnaJ
13 Sobic.003G359400 PPR repeat containing protein, expressed -
14 Sobic.001G155200 ubiquitin carboxyl-terminal hydrolase, family 1, putative, expressed -
15 Sobic.008G072500 SAM-dependent methyltransferase, putative, expressed K18162: NADH dehydrogenase [ubiquinone] 1 alpha subcomplex assembly factor 5
16 Sobic.004G218600 succinyl-CoA ligase beta-chain, mitochondrial precursor, putative, expressed K01900: succinyl-CoA synthetase beta subunit
17 Sobic.004G002500 ribosomal protein, putative, expressed K02988: RP-S5, MRPS5, small subunit ribosomal protein S5
18 Sobic.002G377200 expressed protein -
19 Sobic.002G154800 glycosyl transferase, group 1 domain containing protein, expressed -
20 Sobic.001G117900 CAMK_KIN1/SNF1/Nim1_like.18 - CAMK includes calcium/calmodulin depedent protein kinases, expressed K07359: calcium/calmodulin-dependent protein kinase kinase 2


Gene co-expression network
sample Sobic003G396800 Sobic003G396800 Sobic001G143900 Sobic001G143900 Sobic003G396800--Sobic001G143900 Sobic009G228600 Sobic009G228600 Sobic003G396800--Sobic009G228600 Sobic009G063800 Sobic009G063800 Sobic003G396800--Sobic009G063800 Sobic002G182000 Sobic002G182000 Sobic003G396800--Sobic002G182000 Sobic003G120700 Sobic003G120700 Sobic003G396800--Sobic003G120700 Sobic001G203600 Sobic001G203600 Sobic003G396800--Sobic001G203600 Sobic001G033600 Sobic001G033600 Sobic003G396800--Sobic001G033600 Sobic002G193500 Sobic002G193500 Sobic003G396800--Sobic002G193500 Sobic003G004800 Sobic003G004800 Sobic003G396800--Sobic003G004800 Sobic002G213900 Sobic002G213900 Sobic001G143900--Sobic002G213900 Sobic001G143900--Sobic003G396800 Sobic002G397900 Sobic002G397900 Sobic001G143900--Sobic002G397900 Sobic001G280500 Sobic001G280500 Sobic001G143900--Sobic001G280500 Sobic001G143900--Sobic003G004800 Sobic002G414800 Sobic002G414800 Sobic001G143900--Sobic002G414800 Sobic003G260600 Sobic003G260600 Sobic001G143900--Sobic003G260600 Sobic010G086300 Sobic010G086300 Sobic001G143900--Sobic010G086300 Sobic002G348400 Sobic002G348400 Sobic001G143900--Sobic002G348400 Sobic009G228600--Sobic003G396800 Sobic009G228600--Sobic001G143900 Sobic009G228600--Sobic009G063800 Sobic008G050700 Sobic008G050700 Sobic009G228600--Sobic008G050700 Sobic003G113400 Sobic003G113400 Sobic009G228600--Sobic003G113400 Sobic001G282200 Sobic001G282200 Sobic009G228600--Sobic001G282200 Sobic009G228600--Sobic002G182000 Sobic008G018300 Sobic008G018300 Sobic009G228600--Sobic008G018300 Sobic009G228600--Sobic001G203600 Sobic009G063800--Sobic002G182000 Sobic010G250000 Sobic010G250000 Sobic009G063800--Sobic010G250000 Sobic007G146600 Sobic007G146600 Sobic009G063800--Sobic007G146600 Sobic001G309200 Sobic001G309200 Sobic009G063800--Sobic001G309200 Sobic002G322400 Sobic002G322400 Sobic009G063800--Sobic002G322400 Sobic010G018900 Sobic010G018900 Sobic009G063800--Sobic010G018900 Sobic009G063800--Sobic001G203600 Sobic009G063800--Sobic002G348400 Sobic008G072500 Sobic008G072500 Sobic009G063800--Sobic008G072500 Sobic002G182000--Sobic009G063800 Sobic002G399900 Sobic002G399900 Sobic002G182000--Sobic002G399900 Sobic001G343000 Sobic001G343000 Sobic002G182000--Sobic001G343000 Sobic002G182000--Sobic001G203600 Sobic002G182000--Sobic007G146600 Sobic003G130900 Sobic003G130900 Sobic002G182000--Sobic003G130900 Sobic002G066800 Sobic002G066800 Sobic002G182000--Sobic002G066800 Sobic010G172400 Sobic010G172400 Sobic002G182000--Sobic010G172400 Sobic003G113300 Sobic003G113300 Sobic002G182000--Sobic003G113300 Sobic003G120700--Sobic002G348400 Sobic001G385000 Sobic001G385000 Sobic003G120700--Sobic001G385000 Sobic001G043200 Sobic001G043200 Sobic003G120700--Sobic001G043200 Sobic002G276800 Sobic002G276800 Sobic003G120700--Sobic002G276800 Sobic003G120700--Sobic009G063800 Sobic003G120700--Sobic002G182000 Sobic003G394500 Sobic003G394500 Sobic003G120700--Sobic003G394500 Sobic003G120700--Sobic010G250000 Sobic006G232800 Sobic006G232800 Sobic003G120700--Sobic006G232800 Sobic001G203600--Sobic010G086300 Sobic001G117900 Sobic001G117900 Sobic001G203600--Sobic001G117900 Sobic007G204000 Sobic007G204000 Sobic001G203600--Sobic007G204000 Sobic001G052100 Sobic001G052100 Sobic001G203600--Sobic001G052100 Sobic001G203600--Sobic008G072500 Sobic007G226800 Sobic007G226800 Sobic001G203600--Sobic007G226800 Sobic001G203600--Sobic002G182000 Sobic006G220400 Sobic006G220400 Sobic001G203600--Sobic006G220400 Sobic001G203600--Sobic009G063800 Sobic006G095000 Sobic006G095000 Sobic001G033600--Sobic006G095000 Sobic004G030600 Sobic004G030600 Sobic001G033600--Sobic004G030600 Sobic001G033600--Sobic003G396800 Sobic001G033600--Sobic002G182000 Sobic002G192900 Sobic002G192900 Sobic001G033600--Sobic002G192900 Sobic003G359400 Sobic003G359400 Sobic001G033600--Sobic003G359400 Sobic006G085800 Sobic006G085800 Sobic001G033600--Sobic006G085800 Sobic006G262800 Sobic006G262800 Sobic001G033600--Sobic006G262800 Sobic003G184300 Sobic003G184300 Sobic001G033600--Sobic003G184300 Sobic007G086600 Sobic007G086600 Sobic002G193500--Sobic007G086600 Sobic007G111300 Sobic007G111300 Sobic002G193500--Sobic007G111300 Sobic002G193500--Sobic001G117900 Sobic002G392400 Sobic002G392400 Sobic002G193500--Sobic002G392400 Sobic002G193500--Sobic006G232800 Sobic002G193500--Sobic008G072500 Sobic002G308000 Sobic002G308000 Sobic002G193500--Sobic002G308000 Sobic002G201700 Sobic002G201700 Sobic002G193500--Sobic002G201700 Sobic002G193500--Sobic003G004800 Sobic003G004800--Sobic007G086600 Sobic006G265800 Sobic006G265800 Sobic003G004800--Sobic006G265800 Sobic001G385300 Sobic001G385300 Sobic003G004800--Sobic001G385300 Sobic001G076600 Sobic001G076600 Sobic003G004800--Sobic001G076600 Sobic003G293400 Sobic003G293400 Sobic003G004800--Sobic003G293400 Sobic010G153400 Sobic010G153400 Sobic003G004800--Sobic010G153400 Sobic001G308500 Sobic001G308500 Sobic003G004800--Sobic001G308500 Sobic003G004800--Sobic001G117900 Sobic005G060100 Sobic005G060100 Sobic003G004800--Sobic005G060100
Octagon: transcription factors


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