Gene annotation
Transcriptome id Sobic.001G155200.2,Sobic.001G155200.1
Synonym
Functional annotation ubiquitin carboxyl-terminal hydrolase, family 1, putative, expressed
UniProt A0A1B6QJ50
Pfam PF11955
Panther DB PTHR31476 PTHR31476:SF7
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT1G71850 : Ubiquitin carboxyl-terminal hydrolase family protein
RAP-DB (Rice) LOC_Os03g44430.1 : ubiquitin carboxyl-terminal hydrolase, family 1, putative, expressed
MaizeGDB (Corn) Zm00025a007261
Brachypodium KQK13982
Barley HORVU5Hr1G092880.1 , HORVU5Hr1G092880.2
Wheat -
Populus -


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cDNA sequences
Sobic.001G155200


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.009G218000 VIP1 protein, putative, expressed -
2 Sobic.008G018300 expressed protein K17402: small subunit ribosomal protein S23
3 Sobic.001G282200 ribosomal protein L35, putative, expressed -
4 Sobic.003G349900 50S ribosomal protein L17, putative, expressed K02879: RP-L17, MRPL17, large subunit ribosomal protein L17
5 Sobic.001G143900 expressed protein -
6 Sobic.003G396800 expressed protein K17413: small subunit ribosomal protein S35
7 Sobic.002G397900 39S ribosomal protein L46, mitochondrial precursor, putative, expressed K17427: large subunit ribosomal protein L46
8 Sobic.010G253400 AIG2-like family domain containing protein, expressed -
9 Sobic.006G050100 expressed protein -
10 Sobic.001G529500 PPR repeat domain containing protein, putative, expressed -
11 Sobic.002G217500 WD domain, G-beta repeat domain containing protein, expressed K14004: protein transport protein SEC13
12 Sobic.002G420600 nucleoside-triphosphatase, putative, expressed -
13 Sobic.002G362500 expressed protein -
14 Sobic.001G023600 YIF1B, putative, expressed -
15 Sobic.001G080800 oxidoreductase, putative, expressed K00472: prolyl 4-hydroxylase
16 Sobic.001G309200 fatty acid hydroxylase, putative, expressed K14423: plant 4,4-dimethylsterol C-4alpha-methyl-monooxygenase
17 Sobic.007G049900 MYB family transcription factor, putative, expressed -
18 Sobic.006G096800 expressed protein -
19 Sobic.002G414800 PPR repeat domain containing protein, putative, expressed -
20 Sobic.004G218600 succinyl-CoA ligase beta-chain, mitochondrial precursor, putative, expressed K01900: succinyl-CoA synthetase beta subunit


Gene co-expression network
sample Sobic001G155200 Sobic001G155200 Sobic009G218000 Sobic009G218000 Sobic001G155200--Sobic009G218000 Sobic008G018300 Sobic008G018300 Sobic001G155200--Sobic008G018300 Sobic001G282200 Sobic001G282200 Sobic001G155200--Sobic001G282200 Sobic003G349900 Sobic003G349900 Sobic001G155200--Sobic003G349900 Sobic001G143900 Sobic001G143900 Sobic001G155200--Sobic001G143900 Sobic003G396800 Sobic003G396800 Sobic001G155200--Sobic003G396800 Sobic002G397900 Sobic002G397900 Sobic001G155200--Sobic002G397900 Sobic010G253400 Sobic010G253400 Sobic001G155200--Sobic010G253400 Sobic006G050100 Sobic006G050100 Sobic001G155200--Sobic006G050100 Sobic006G153200 Sobic006G153200 Sobic009G218000--Sobic006G153200 Sobic001G309200 Sobic001G309200 Sobic009G218000--Sobic001G309200 Sobic003G167000 Sobic003G167000 Sobic009G218000--Sobic003G167000 Sobic002G217500 Sobic002G217500 Sobic009G218000--Sobic002G217500 Sobic002G422400 Sobic002G422400 Sobic009G218000--Sobic002G422400 Sobic001G352800 Sobic001G352800 Sobic009G218000--Sobic001G352800 Sobic001G485300 Sobic001G485300 Sobic009G218000--Sobic001G485300 Sobic009G218000--Sobic001G155200 Sobic008G011800 Sobic008G011800 Sobic009G218000--Sobic008G011800 Sobic002G255400 Sobic002G255400 Sobic008G018300--Sobic002G255400 Sobic002G352200 Sobic002G352200 Sobic008G018300--Sobic002G352200 Sobic001G387200 Sobic001G387200 Sobic008G018300--Sobic001G387200 Sobic004G173700 Sobic004G173700 Sobic008G018300--Sobic004G173700 Sobic002G420600 Sobic002G420600 Sobic008G018300--Sobic002G420600 Sobic003G260600 Sobic003G260600 Sobic008G018300--Sobic003G260600 Sobic008G018300--Sobic001G282200 Sobic003G129900 Sobic003G129900 Sobic008G018300--Sobic003G129900 Sobic003G016300 Sobic003G016300 Sobic008G018300--Sobic003G016300 Sobic001G282200--Sobic003G260600 Sobic001G282200--Sobic002G420600 Sobic003G089100 Sobic003G089100 Sobic001G282200--Sobic003G089100 Sobic003G201500 Sobic003G201500 Sobic001G282200--Sobic003G201500 Sobic001G282200--Sobic002G255400 Sobic001G282200--Sobic008G018300 Sobic001G282200--Sobic002G397900 Sobic003G013700 Sobic003G013700 Sobic001G282200--Sobic003G013700 Sobic004G100100 Sobic004G100100 Sobic001G282200--Sobic004G100100 Sobic004G279200 Sobic004G279200 Sobic003G349900--Sobic004G279200 Sobic006G267100 Sobic006G267100 Sobic003G349900--Sobic006G267100 Sobic004G038500 Sobic004G038500 Sobic003G349900--Sobic004G038500 Sobic009G242600 Sobic009G242600 Sobic003G349900--Sobic009G242600 Sobic006G070564 Sobic006G070564 Sobic003G349900--Sobic006G070564 Sobic002G389600 Sobic002G389600 Sobic003G349900--Sobic002G389600 Sobic003G211800 Sobic003G211800 Sobic003G349900--Sobic003G211800 Sobic001G414650 Sobic001G414650 Sobic003G349900--Sobic001G414650 Sobic002G362500 Sobic002G362500 Sobic003G349900--Sobic002G362500 Sobic002G213900 Sobic002G213900 Sobic001G143900--Sobic002G213900 Sobic001G143900--Sobic003G396800 Sobic001G143900--Sobic002G397900 Sobic001G280500 Sobic001G280500 Sobic001G143900--Sobic001G280500 Sobic003G004800 Sobic003G004800 Sobic001G143900--Sobic003G004800 Sobic002G414800 Sobic002G414800 Sobic001G143900--Sobic002G414800 Sobic001G143900--Sobic003G260600 Sobic010G086300 Sobic010G086300 Sobic001G143900--Sobic010G086300 Sobic002G348400 Sobic002G348400 Sobic001G143900--Sobic002G348400 Sobic003G396800--Sobic001G143900 Sobic009G228600 Sobic009G228600 Sobic003G396800--Sobic009G228600 Sobic009G063800 Sobic009G063800 Sobic003G396800--Sobic009G063800 Sobic002G182000 Sobic002G182000 Sobic003G396800--Sobic002G182000 Sobic003G120700 Sobic003G120700 Sobic003G396800--Sobic003G120700 Sobic001G203600 Sobic001G203600 Sobic003G396800--Sobic001G203600 Sobic001G033600 Sobic001G033600 Sobic003G396800--Sobic001G033600 Sobic002G193500 Sobic002G193500 Sobic003G396800--Sobic002G193500 Sobic003G396800--Sobic003G004800 Sobic002G397900--Sobic003G349900 Sobic002G397900--Sobic001G280500 Sobic002G397900--Sobic003G089100 Sobic004G074600 Sobic004G074600 Sobic002G397900--Sobic004G074600 Sobic002G397900--Sobic002G213900 Sobic002G397900--Sobic002G414800 Sobic002G054700 Sobic002G054700 Sobic002G397900--Sobic002G054700 Sobic001G356200 Sobic001G356200 Sobic002G397900--Sobic001G356200 Sobic002G397900--Sobic003G201500 Sobic008G141600 Sobic008G141600 Sobic010G253400--Sobic008G141600 Sobic001G408400 Sobic001G408400 Sobic010G253400--Sobic001G408400 Sobic004G074900 Sobic004G074900 Sobic010G253400--Sobic004G074900 Sobic002G368100 Sobic002G368100 Sobic010G253400--Sobic002G368100 Sobic003G372200 Sobic003G372200 Sobic010G253400--Sobic003G372200 Sobic010G253400--Sobic002G420600 Sobic003G040700 Sobic003G040700 Sobic010G253400--Sobic003G040700 Sobic005G145201 Sobic005G145201 Sobic010G253400--Sobic005G145201 Sobic001G490950 Sobic001G490950 Sobic010G253400--Sobic001G490950 Sobic001G073700 Sobic001G073700 Sobic006G050100--Sobic001G073700 Sobic006G050100--Sobic002G362500 Sobic001G322400 Sobic001G322400 Sobic006G050100--Sobic001G322400 Sobic008G141100 Sobic008G141100 Sobic006G050100--Sobic008G141100 Sobic006G156400 Sobic006G156400 Sobic006G050100--Sobic006G156400 Sobic009G025700 Sobic009G025700 Sobic006G050100--Sobic009G025700 Sobic001G072000 Sobic001G072000 Sobic006G050100--Sobic001G072000 Sobic009G098700 Sobic009G098700 Sobic006G050100--Sobic009G098700 Sobic010G073900 Sobic010G073900 Sobic006G050100--Sobic010G073900
Octagon: transcription factors


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