Gene annotation
Transcriptome id Sobic.007G049900.3,Sobic.007G049900.2,Sobic.007G049900.4
Synonym Sb07g004030
Functional annotation MYB family transcription factor, putative, expressed
UniProt C5YHC8
Pfam PF00249
Panther DB PTHR24078 PTHR24078:SF310
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT5G45420 : Duplicated homeodomain-like superfamily protein
RAP-DB (Rice) LOC_Os08g06240.1 : MYB family transcription factor, putative, expressed
MaizeGDB (Corn) Zm00025a055121
Brachypodium KQJ95311
Barley HORVU7Hr1G070730.1 , HORVU7Hr1G070730.2 , HORVU7Hr1G070730.3
Wheat -
Populus -


JBrowse

Open New Page


cDNA sequences
Sobic.007G049900


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G453600 beta-hexosaminidase precursor, putative, expressed K12373: hexosaminidase
2 Sobic.006G162400 expressed protein -
3 Sobic.002G414800 PPR repeat domain containing protein, putative, expressed -
4 Sobic.001G387300 exostosin family domain containing protein, expressed -
5 Sobic.009G218000 VIP1 protein, putative, expressed -
6 Sobic.008G011800 DTW domain containing protein, putative, expressed -
7 Sobic.009G046900 N-acetylglucosaminyltransferase, putative, expressed -
8 Sobic.002G239400 OsFBX338 - F-box domain containing protein, expressed -
9 Sobic.010G225201 - -
10 Sobic.001G504500 expressed protein -
11 Sobic.008G143100 SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@zinc finger, C3HC4 type domain containing protein, expressed -
12 Sobic.004G113600 protein phosphatase 2C, putative, expressed K17506: PPM1L, protein phosphatase 1L
13 Sobic.002G379800 hydrolase protein, putative, expressed -
14 Sobic.001G385000 nucleoside-triphosphatase, putative, expressed K14641: apyrase
15 Sobic.005G185500 - -
16 Sobic.006G134500 calcium-binding mitochondrial protein anon-60Da, putative, expressed K17800: LETM1, LETM1 and EF-hand domain-containing protein 1, mitochondrial
17 Sobic.009G085300 - -
18 Sobic.004G007400 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@CCT/B-box zinc finger protein, putative, expressed -
19 Sobic.002G348400 adenylyl-sulfate kinase, putative, expressed K00860: adenylylsulfate kinase
20 Sobic.004G074600 zinc finger, C3HC4 type domain containing protein, expressed -


Gene co-expression network
sample Sobic007G049900 Sobic007G049900 Sobic001G453600 Sobic001G453600 Sobic007G049900--Sobic001G453600 Sobic006G162400 Sobic006G162400 Sobic007G049900--Sobic006G162400 Sobic002G414800 Sobic002G414800 Sobic007G049900--Sobic002G414800 Sobic001G387300 Sobic001G387300 Sobic007G049900--Sobic001G387300 Sobic009G218000 Sobic009G218000 Sobic007G049900--Sobic009G218000 Sobic008G011800 Sobic008G011800 Sobic007G049900--Sobic008G011800 Sobic009G046900 Sobic009G046900 Sobic007G049900--Sobic009G046900 Sobic002G239400 Sobic002G239400 Sobic007G049900--Sobic002G239400 Sobic010G225201 Sobic010G225201 Sobic007G049900--Sobic010G225201 Sobic010G145100 Sobic010G145100 Sobic001G453600--Sobic010G145100 Sobic004G046800 Sobic004G046800 Sobic001G453600--Sobic004G046800 Sobic006G093600 Sobic006G093600 Sobic001G453600--Sobic006G093600 Sobic009G229400 Sobic009G229400 Sobic001G453600--Sobic009G229400 Sobic009G202000 Sobic009G202000 Sobic001G453600--Sobic009G202000 Sobic001G453600--Sobic006G162400 Sobic001G453600--Sobic001G387300 Sobic003G024100 Sobic003G024100 Sobic001G453600--Sobic003G024100 Sobic009G061500 Sobic009G061500 Sobic001G453600--Sobic009G061500 Sobic006G162400--Sobic001G453600 Sobic006G162400--Sobic004G046800 Sobic006G134500 Sobic006G134500 Sobic006G162400--Sobic006G134500 Sobic001G356200 Sobic001G356200 Sobic006G162400--Sobic001G356200 Sobic006G162400--Sobic009G046900 Sobic010G255900 Sobic010G255900 Sobic006G162400--Sobic010G255900 Sobic004G113600 Sobic004G113600 Sobic006G162400--Sobic004G113600 Sobic006G162400--Sobic001G387300 Sobic010G130601 Sobic010G130601 Sobic006G162400--Sobic010G130601 Sobic001G384200 Sobic001G384200 Sobic002G414800--Sobic001G384200 Sobic008G166100 Sobic008G166100 Sobic002G414800--Sobic008G166100 Sobic001G280500 Sobic001G280500 Sobic002G414800--Sobic001G280500 Sobic006G265800 Sobic006G265800 Sobic002G414800--Sobic006G265800 Sobic002G414800--Sobic006G134500 Sobic001G400000 Sobic001G400000 Sobic002G414800--Sobic001G400000 Sobic004G007400 Sobic004G007400 Sobic002G414800--Sobic004G007400 Sobic002G414800--Sobic001G387300 Sobic002G362500 Sobic002G362500 Sobic002G414800--Sobic002G362500 Sobic001G387300--Sobic001G384200 Sobic009G178400 Sobic009G178400 Sobic001G387300--Sobic009G178400 Sobic001G387300--Sobic008G166100 Sobic001G322400 Sobic001G322400 Sobic001G387300--Sobic001G322400 Sobic001G387300--Sobic004G113600 Sobic001G387300--Sobic009G202000 Sobic003G244400 Sobic003G244400 Sobic001G387300--Sobic003G244400 Sobic001G072000 Sobic001G072000 Sobic001G387300--Sobic001G072000 Sobic001G432200 Sobic001G432200 Sobic001G387300--Sobic001G432200 Sobic006G153200 Sobic006G153200 Sobic009G218000--Sobic006G153200 Sobic001G309200 Sobic001G309200 Sobic009G218000--Sobic001G309200 Sobic003G167000 Sobic003G167000 Sobic009G218000--Sobic003G167000 Sobic002G217500 Sobic002G217500 Sobic009G218000--Sobic002G217500 Sobic002G422400 Sobic002G422400 Sobic009G218000--Sobic002G422400 Sobic001G352800 Sobic001G352800 Sobic009G218000--Sobic001G352800 Sobic001G485300 Sobic001G485300 Sobic009G218000--Sobic001G485300 Sobic001G155200 Sobic001G155200 Sobic009G218000--Sobic001G155200 Sobic009G218000--Sobic008G011800 Sobic002G420100 Sobic002G420100 Sobic008G011800--Sobic002G420100 Sobic010G253200 Sobic010G253200 Sobic008G011800--Sobic010G253200 Sobic003G260600 Sobic003G260600 Sobic008G011800--Sobic003G260600 Sobic008G011800--Sobic002G414800 Sobic004G017900 Sobic004G017900 Sobic008G011800--Sobic004G017900 Sobic001G188000 Sobic001G188000 Sobic008G011800--Sobic001G188000 Sobic010G188900 Sobic010G188900 Sobic008G011800--Sobic010G188900 Sobic008G011800--Sobic001G309200 Sobic002G392400 Sobic002G392400 Sobic008G011800--Sobic002G392400 Sobic001G149000 Sobic001G149000 Sobic009G046900--Sobic001G149000 Sobic009G046900--Sobic009G178400 Sobic002G233600 Sobic002G233600 Sobic009G046900--Sobic002G233600 Sobic009G046900--Sobic006G134500 Sobic002G074800 Sobic002G074800 Sobic009G046900--Sobic002G074800 Sobic003G385300 Sobic003G385300 Sobic009G046900--Sobic003G385300 Sobic009G046900--Sobic001G384200 Sobic006G193400 Sobic006G193400 Sobic009G046900--Sobic006G193400 Sobic003G358600 Sobic003G358600 Sobic009G046900--Sobic003G358600 Sobic004G213400 Sobic004G213400 Sobic002G239400--Sobic004G213400 Sobic002G348400 Sobic002G348400 Sobic002G239400--Sobic002G348400 Sobic001G131900 Sobic001G131900 Sobic002G239400--Sobic001G131900 Sobic001G117900 Sobic001G117900 Sobic002G239400--Sobic001G117900 Sobic002G239400--Sobic002G392400 Sobic003G293400 Sobic003G293400 Sobic002G239400--Sobic003G293400 Sobic007G105700 Sobic007G105700 Sobic002G239400--Sobic007G105700 Sobic009G054400 Sobic009G054400 Sobic002G239400--Sobic009G054400 Sobic005G048600 Sobic005G048600 Sobic002G239400--Sobic005G048600 Sobic002G034750 Sobic002G034750 Sobic010G225201--Sobic002G034750 Sobic010G039000 Sobic010G039000 Sobic010G225201--Sobic010G039000 Sobic001G504500 Sobic001G504500 Sobic010G225201--Sobic001G504500 Sobic008G006000 Sobic008G006000 Sobic010G225201--Sobic008G006000 Sobic010G225201--Sobic010G255900 Sobic002G397900 Sobic002G397900 Sobic010G225201--Sobic002G397900 Sobic004G100100 Sobic004G100100 Sobic010G225201--Sobic004G100100 Sobic005G170000 Sobic005G170000 Sobic010G225201--Sobic005G170000 Sobic007G219500 Sobic007G219500 Sobic010G225201--Sobic007G219500
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.