Gene annotation
Transcriptome id Sobic.001G033600.2,Sobic.001G033600.3
Synonym Sb01g003150
Functional annotation pentatricopeptide, putative, expressed
UniProt A0A1Z5S4M2
Pfam PF01535 PF14432 PF13041
Panther DB PTHR24015 PTHR24015:SF571
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT4G21065 : Tetratricopeptide repeat (TPR)-like superfamily protein
RAP-DB (Rice) LOC_Os03g60690.1 : pentatricopeptide, putative, expressed
MaizeGDB (Corn) Zm00025a016423
Brachypodium KQK12424
Barley HORVU5Hr1G113330.8 , HORVU5Hr1G113330.9 , HORVU5Hr1G113330.2 , HORVU5Hr1G113330.3 , HORVU5Hr1G113330.1 , HORVU5Hr1G113330.6 , HORVU5Hr1G113330.7 , HORVU5Hr1G113330.4 , HORVU5Hr1G113330.5 , HORVU7Hr1G049380.1 , HORVU7Hr1G049380.3 , HORVU7Hr1G049380.2 , HORVU2Hr1G116530.1 , HORVU5Hr1G054950.1 , HORVU5Hr1G113330.18 , HORVU5Hr1G113330.19 , HORVU5Hr1G113330.10 , HORVU5Hr1G113330.11 , HORVU5Hr1G113330.12 , HORVU5Hr1G113330.13 , HORVU5Hr1G113330.14 , HORVU5Hr1G113330.15 , HORVU5Hr1G113330.16 , HORVU5Hr1G113330.17 , HORVU5Hr1G113330.29 , HORVU5Hr1G113330.28 , HORVU5Hr1G113330.25 , HORVU5Hr1G113330.24 , HORVU5Hr1G113330.27 , HORVU5Hr1G113330.21 , HORVU5Hr1G113330.20 , HORVU5Hr1G113330.23 , HORVU5Hr1G113330.22 , HORVU5Hr1G113330.30 , HORVU5Hr1G113330.31 , HORVU5Hr1G054950.2 , HORVU5Hr1G113330.26
Wheat TraesCS5D02G493600
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.006G095000 PPR repeat domain containing protein, putative, expressed -
2 Sobic.004G030600 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein -
3 Sobic.003G396800 expressed protein K17413: small subunit ribosomal protein S35
4 Sobic.002G182000 cwfJ-like family protein, putative, expressed -
5 Sobic.002G192900 expressed protein -
6 Sobic.003G359400 PPR repeat containing protein, expressed -
7 Sobic.006G085800 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@pentatricopeptide, putative, expressed -
8 Sobic.006G262800 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@pentatricopeptide, putative, expressed -
9 Sobic.003G184300 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein -
10 Sobic.010G147500 tryptophan biosynthesis protein trpCF, putative, expressed K01817: phosphoribosylanthranilate isomerase
11 Sobic.002G154800 glycosyl transferase, group 1 domain containing protein, expressed -
12 Sobic.001G204700 expressed protein -
13 Sobic.001G203600 PPR repeat domain containing protein, putative, expressed -
14 Sobic.010G190900 pentatricopeptide, putative, expressed -
15 Sobic.008G031200 pentatricopeptide, putative, expressed -
16 Sobic.010G188900 PPR repeat domain containing protein, putative, expressed -
17 Sobic.003G045000 serine/threonine protein phosphatase 2A 59 kDa regulatory subunit Bgamma isoform, putative, expressed K11584: serine/threonine-protein phosphatase 2A regulatory subunit B'
18 Sobic.001G023600 YIF1B, putative, expressed -
19 Sobic.001G433600 - -
20 Sobic.004G256900 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@PPR repeat domain containing protein, putative, expressed -


Gene co-expression network
sample Sobic001G033600 Sobic001G033600 Sobic006G095000 Sobic006G095000 Sobic001G033600--Sobic006G095000 Sobic004G030600 Sobic004G030600 Sobic001G033600--Sobic004G030600 Sobic003G396800 Sobic003G396800 Sobic001G033600--Sobic003G396800 Sobic002G182000 Sobic002G182000 Sobic001G033600--Sobic002G182000 Sobic002G192900 Sobic002G192900 Sobic001G033600--Sobic002G192900 Sobic003G359400 Sobic003G359400 Sobic001G033600--Sobic003G359400 Sobic006G085800 Sobic006G085800 Sobic001G033600--Sobic006G085800 Sobic006G262800 Sobic006G262800 Sobic001G033600--Sobic006G262800 Sobic003G184300 Sobic003G184300 Sobic001G033600--Sobic003G184300 Sobic006G095000--Sobic003G184300 Sobic006G095000--Sobic002G192900 Sobic004G064600 Sobic004G064600 Sobic006G095000--Sobic004G064600 Sobic008G047500 Sobic008G047500 Sobic006G095000--Sobic008G047500 Sobic004G215600 Sobic004G215600 Sobic006G095000--Sobic004G215600 Sobic001G323400 Sobic001G323400 Sobic006G095000--Sobic001G323400 Sobic002G308000 Sobic002G308000 Sobic006G095000--Sobic002G308000 Sobic003G045000 Sobic003G045000 Sobic006G095000--Sobic003G045000 Sobic009G120400 Sobic009G120400 Sobic006G095000--Sobic009G120400 Sobic004G030600--Sobic001G033600 Sobic008G031200 Sobic008G031200 Sobic004G030600--Sobic008G031200 Sobic006G143200 Sobic006G143200 Sobic004G030600--Sobic006G143200 Sobic002G362200 Sobic002G362200 Sobic004G030600--Sobic002G362200 Sobic004G027700 Sobic004G027700 Sobic004G030600--Sobic004G027700 Sobic002G084400 Sobic002G084400 Sobic004G030600--Sobic002G084400 Sobic004G030600--Sobic006G085800 Sobic010G068900 Sobic010G068900 Sobic004G030600--Sobic010G068900 Sobic003G067201 Sobic003G067201 Sobic004G030600--Sobic003G067201 Sobic001G143900 Sobic001G143900 Sobic003G396800--Sobic001G143900 Sobic009G228600 Sobic009G228600 Sobic003G396800--Sobic009G228600 Sobic009G063800 Sobic009G063800 Sobic003G396800--Sobic009G063800 Sobic003G396800--Sobic002G182000 Sobic003G120700 Sobic003G120700 Sobic003G396800--Sobic003G120700 Sobic001G203600 Sobic001G203600 Sobic003G396800--Sobic001G203600 Sobic003G396800--Sobic001G033600 Sobic002G193500 Sobic002G193500 Sobic003G396800--Sobic002G193500 Sobic003G004800 Sobic003G004800 Sobic003G396800--Sobic003G004800 Sobic002G182000--Sobic009G063800 Sobic002G399900 Sobic002G399900 Sobic002G182000--Sobic002G399900 Sobic001G343000 Sobic001G343000 Sobic002G182000--Sobic001G343000 Sobic002G182000--Sobic001G203600 Sobic007G146600 Sobic007G146600 Sobic002G182000--Sobic007G146600 Sobic003G130900 Sobic003G130900 Sobic002G182000--Sobic003G130900 Sobic002G066800 Sobic002G066800 Sobic002G182000--Sobic002G066800 Sobic010G172400 Sobic010G172400 Sobic002G182000--Sobic010G172400 Sobic003G113300 Sobic003G113300 Sobic002G182000--Sobic003G113300 Sobic002G192900--Sobic002G308000 Sobic010G188900 Sobic010G188900 Sobic002G192900--Sobic010G188900 Sobic002G192900--Sobic006G095000 Sobic001G361200 Sobic001G361200 Sobic002G192900--Sobic001G361200 Sobic002G390800 Sobic002G390800 Sobic002G192900--Sobic002G390800 Sobic002G192900--Sobic003G184300 Sobic002G192900--Sobic004G064600 Sobic002G192900--Sobic001G323400 Sobic001G248400 Sobic001G248400 Sobic002G192900--Sobic001G248400 Sobic003G359400--Sobic003G067201 Sobic003G359400--Sobic001G033600 Sobic009G042000 Sobic009G042000 Sobic003G359400--Sobic009G042000 Sobic005G123400 Sobic005G123400 Sobic003G359400--Sobic005G123400 Sobic003G359400--Sobic003G396800 Sobic004G070100 Sobic004G070100 Sobic003G359400--Sobic004G070100 Sobic010G190900 Sobic010G190900 Sobic003G359400--Sobic010G190900 Sobic006G191200 Sobic006G191200 Sobic003G359400--Sobic006G191200 Sobic003G393200 Sobic003G393200 Sobic003G359400--Sobic003G393200 Sobic001G436600 Sobic001G436600 Sobic006G085800--Sobic001G436600 Sobic001G478900 Sobic001G478900 Sobic006G085800--Sobic001G478900 Sobic004G256900 Sobic004G256900 Sobic006G085800--Sobic004G256900 Sobic002G172500 Sobic002G172500 Sobic006G085800--Sobic002G172500 Sobic006G085900 Sobic006G085900 Sobic006G085800--Sobic006G085900 Sobic006G085800--Sobic010G068900 Sobic006G085800--Sobic010G190900 Sobic006G085800--Sobic006G262800 Sobic006G085800--Sobic006G095000 Sobic006G262800--Sobic010G068900 Sobic009G154900 Sobic009G154900 Sobic006G262800--Sobic009G154900 Sobic006G262800--Sobic001G478900 Sobic006G262800--Sobic004G256900 Sobic006G262800--Sobic002G172500 Sobic008G163400 Sobic008G163400 Sobic006G262800--Sobic008G163400 Sobic001G052100 Sobic001G052100 Sobic006G262800--Sobic001G052100 Sobic001G268300 Sobic001G268300 Sobic006G262800--Sobic001G268300 Sobic004G241000 Sobic004G241000 Sobic006G262800--Sobic004G241000 Sobic003G184300--Sobic004G256900 Sobic003G184300--Sobic006G095000 Sobic003G184300--Sobic002G192900 Sobic003G184300--Sobic001G361200 Sobic003G184300--Sobic001G478900 Sobic003G184300--Sobic010G068900 Sobic003G184300--Sobic002G172500 Sobic003G184300--Sobic010G188900 Sobic003G184300--Sobic004G064600
Octagon: transcription factors


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