Gene annotation
Transcriptome id Sobic.004G174700.1
Synonym TMN1, AtTMN1, Sb04g022500
Functional annotation transmembrane 9 superfamily member, putative, expressed
UniProt C5XU73
Pfam PF02990
Panther DB PTHR10766 PTHR10766:SF52
NCBI CDD -
KEGG Orthology K17087; transmembrane 9 superfamily member 3
Gene Ontology GO:0016021; integral component of membrane


Orthologs (automatic annotation)
TAIR AT1G10950 : transmembrane nine 1
RAP-DB (Rice) LOC_Os02g34690.1 : transmembrane 9 superfamily member, putative, expressed
MaizeGDB (Corn) Zm00025a025714 , Zm00025a020630 , Zm00025a054058
Brachypodium KQJ99852
Barley HORVU0Hr1G010920.3 , HORVU6Hr1G048600.21 , HORVU6Hr1G048600.20 , HORVU6Hr1G048600.23 , HORVU6Hr1G048600.22 , HORVU6Hr1G048600.25 , HORVU6Hr1G048600.24 , HORVU6Hr1G048600.27 , HORVU6Hr1G048600.26 , HORVU6Hr1G048600.29 , HORVU6Hr1G048600.28 , HORVU0Hr1G010920.2 , HORVU0Hr1G010920.4 , HORVU0Hr1G010920.5 , HORVU5Hr1G036940.7 , HORVU5Hr1G036940.6 , HORVU5Hr1G036940.5 , HORVU5Hr1G036940.4 , HORVU5Hr1G036940.3 , HORVU5Hr1G036940.2 , HORVU5Hr1G036940.1 , HORVU6Hr1G048600.14 , HORVU6Hr1G048600.15 , HORVU6Hr1G048600.16 , HORVU6Hr1G048600.17 , HORVU6Hr1G048600.10 , HORVU6Hr1G048600.11 , HORVU6Hr1G048600.12 , HORVU6Hr1G048600.13 , HORVU0Hr1G010920.1 , HORVU0Hr1G010920.6 , HORVU6Hr1G048600.6 , HORVU6Hr1G048600.7 , HORVU6Hr1G048600.4 , HORVU6Hr1G048600.5 , HORVU6Hr1G048600.2 , HORVU6Hr1G048600.3 , HORVU6Hr1G048600.1 , HORVU6Hr1G048600.8 , HORVU6Hr1G048600.9 , HORVU6Hr1G048600.18 , HORVU6Hr1G048600.19
Wheat TraesCS5D02G128300 , TraesCS5A02G111400 , TraesCS5B02G119400 , TraesCS4A02G217900
Populus PNT43115 , PNT43114 , PNT43117 , PNT43116 , PNT43113 , PNT42539 , PNT42541 , PNT42540


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cDNA sequences
Sobic.004G174700


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.010G178600 coatomer subunit beta, putative, expressed K17302: COPB2, coatomer subunit beta'
2 Sobic.009G118900 expressed protein -
3 Sobic.004G336300 AP-1 complex subunit gamma-1, putative, expressed K12391: AP-1 complex subunit gamma-1
4 Sobic.004G034300 transducin family protein, putative, expressed -
5 Sobic.002G070600 coatomer subunit gamma-2, putative, expressed K17267: coatomer subunit gamma
6 Sobic.001G380600 insulin-degrading enzyme, putative, expressed K01411: nardilysin
7 Sobic.004G348600 tetratricopeptide repeat containing protein, putative, expressed -
8 Sobic.001G011000 elongation factor Tu, putative, expressed K02358: tuf, elongation factor Tu
9 Sobic.004G212100 PPR repeat domain containing protein, putative, expressed -
10 Sobic.001G117800 coatomer alpha subunit, putative, expressed K05236: COPA, coatomer subunit alpha
11 Sobic.001G097900 expressed protein -
12 Sobic.003G130900 glucosidase II beta subunit-like domain containing protein, expressed K08288: protein kinase C substrate 80K-H
13 Sobic.006G265600 oligosaccharyl transferase, putative, expressed K07151: dolichyl-diphosphooligosaccharide---protein glycosyltransferase
14 Sobic.002G367800 PPR repeat domain containing protein, putative, expressed -
15 Sobic.001G004200 uncharacterized protein yeiN, putative, expressed K16329: pseudouridylate synthase
16 Sobic.002G071100 expressed protein K17408: DAP3, small subunit ribosomal protein S29
17 Sobic.008G072200 coatomer subunit delta, putative, expressed -
18 Sobic.010G192600 tubulin binding cofactor C, putative, expressed K16810: TBCC domain-containing protein 1
19 Sobic.003G159700 ATKINESIN-13A/KINESIN-13A, putative, expressed K10393: KIF2_24, kinesin family member 2/24
20 Sobic.003G334700 HEAT, putative, expressed K16803: CKAP5, cytoskeleton-associated protein 5


Gene co-expression network
sample Sobic004G174700 Sobic004G174700 Sobic010G178600 Sobic010G178600 Sobic004G174700--Sobic010G178600 Sobic009G118900 Sobic009G118900 Sobic004G174700--Sobic009G118900 Sobic004G336300 Sobic004G336300 Sobic004G174700--Sobic004G336300 Sobic004G034300 Sobic004G034300 Sobic004G174700--Sobic004G034300 Sobic002G070600 Sobic002G070600 Sobic004G174700--Sobic002G070600 Sobic001G380600 Sobic001G380600 Sobic004G174700--Sobic001G380600 Sobic004G348600 Sobic004G348600 Sobic004G174700--Sobic004G348600 Sobic001G011000 Sobic001G011000 Sobic004G174700--Sobic001G011000 Sobic004G212100 Sobic004G212100 Sobic004G174700--Sobic004G212100 Sobic010G178600--Sobic004G174700 Sobic010G178600--Sobic009G118900 Sobic010G178600--Sobic004G034300 Sobic010G178600--Sobic002G070600 Sobic008G072200 Sobic008G072200 Sobic010G178600--Sobic008G072200 Sobic003G134800 Sobic003G134800 Sobic010G178600--Sobic003G134800 Sobic010G178600--Sobic004G336300 Sobic001G117800 Sobic001G117800 Sobic010G178600--Sobic001G117800 Sobic003G029600 Sobic003G029600 Sobic010G178600--Sobic003G029600 Sobic009G118900--Sobic001G117800 Sobic002G340900 Sobic002G340900 Sobic009G118900--Sobic002G340900 Sobic001G437400 Sobic001G437400 Sobic009G118900--Sobic001G437400 Sobic009G118900--Sobic010G178600 Sobic009G118900--Sobic003G029600 Sobic009G118900--Sobic002G070600 Sobic009G118900--Sobic004G174700 Sobic009G118900--Sobic004G336300 Sobic003G334700 Sobic003G334700 Sobic009G118900--Sobic003G334700 Sobic004G336300--Sobic008G072200 Sobic004G336300--Sobic004G034300 Sobic004G336300--Sobic002G070600 Sobic004G336300--Sobic009G118900 Sobic004G336300--Sobic001G117800 Sobic004G336300--Sobic003G334700 Sobic004G336300--Sobic004G174700 Sobic004G336300--Sobic010G178600 Sobic004G336300--Sobic001G437400 Sobic004G034300--Sobic004G336300 Sobic004G034300--Sobic010G178600 Sobic004G034300--Sobic002G070600 Sobic004G034300--Sobic008G072200 Sobic005G059500 Sobic005G059500 Sobic004G034300--Sobic005G059500 Sobic004G034300--Sobic009G118900 Sobic004G034300--Sobic003G334700 Sobic004G034300--Sobic004G212100 Sobic001G012900 Sobic001G012900 Sobic004G034300--Sobic001G012900 Sobic002G070600--Sobic008G072200 Sobic002G070600--Sobic001G117800 Sobic001G161700 Sobic001G161700 Sobic002G070600--Sobic001G161700 Sobic008G085700 Sobic008G085700 Sobic002G070600--Sobic008G085700 Sobic002G070600--Sobic004G336300 Sobic002G070600--Sobic003G029600 Sobic006G021700 Sobic006G021700 Sobic002G070600--Sobic006G021700 Sobic002G070600--Sobic009G118900 Sobic002G070600--Sobic010G178600 Sobic002G071100 Sobic002G071100 Sobic001G380600--Sobic002G071100 Sobic001G380600--Sobic004G174700 Sobic001G380600--Sobic001G011000 Sobic001G455000 Sobic001G455000 Sobic001G380600--Sobic001G455000 Sobic010G192600 Sobic010G192600 Sobic001G380600--Sobic010G192600 Sobic001G380600--Sobic002G070600 Sobic003G397900 Sobic003G397900 Sobic001G380600--Sobic003G397900 Sobic002G117600 Sobic002G117600 Sobic001G380600--Sobic002G117600 Sobic007G118500 Sobic007G118500 Sobic001G380600--Sobic007G118500 Sobic004G137500 Sobic004G137500 Sobic004G348600--Sobic004G137500 Sobic010G081700 Sobic010G081700 Sobic004G348600--Sobic010G081700 Sobic004G348600--Sobic002G071100 Sobic004G348600--Sobic004G174700 Sobic006G265600 Sobic006G265600 Sobic004G348600--Sobic006G265600 Sobic002G367800 Sobic002G367800 Sobic004G348600--Sobic002G367800 Sobic001G004200 Sobic001G004200 Sobic004G348600--Sobic001G004200 Sobic003G130000 Sobic003G130000 Sobic004G348600--Sobic003G130000 Sobic009G041800 Sobic009G041800 Sobic004G348600--Sobic009G041800 Sobic001G011000--Sobic004G212100 Sobic001G011000--Sobic002G367800 Sobic001G011000--Sobic002G071100 Sobic004G356300 Sobic004G356300 Sobic001G011000--Sobic004G356300 Sobic002G070300 Sobic002G070300 Sobic001G011000--Sobic002G070300 Sobic001G011000--Sobic009G041800 Sobic002G281600 Sobic002G281600 Sobic001G011000--Sobic002G281600 Sobic002G153000 Sobic002G153000 Sobic001G011000--Sobic002G153000 Sobic008G057900 Sobic008G057900 Sobic001G011000--Sobic008G057900 Sobic004G212100--Sobic002G367800 Sobic004G212100--Sobic001G011000 Sobic004G212100--Sobic009G041800 Sobic003G388900 Sobic003G388900 Sobic004G212100--Sobic003G388900 Sobic004G212100--Sobic002G070300 Sobic004G212100--Sobic001G161700 Sobic004G212100--Sobic004G034300 Sobic001G522000 Sobic001G522000 Sobic004G212100--Sobic001G522000 Sobic001G490500 Sobic001G490500 Sobic004G212100--Sobic001G490500
Octagon: transcription factors


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