Gene annotation
Transcriptome id Sobic.001G004200.1
Synonym Sb01g000470
Functional annotation uncharacterized protein yeiN, putative, expressed
UniProt C5WRW4
Pfam PF04227
Panther DB PTHR10584 PTHR10584:SF201
NCBI CDD -
KEGG Orthology K16329; pseudouridylate synthase
Gene Ontology GO:0016798; hydrolase activity, acting on glycosyl bonds


Orthologs (automatic annotation)
TAIR AT1G50510 : indigoidine synthase A family protein
RAP-DB (Rice) LOC_Os08g39420.2 : uncharacterized protein yeiN, putative, expressed
MaizeGDB (Corn) Zm00025a021576
Brachypodium KQK11994 , KQK11993 , KQK11992
Barley HORVU4Hr1G077000.8 , HORVU4Hr1G077000.1 , HORVU4Hr1G077000.2 , HORVU4Hr1G077000.4 , HORVU4Hr1G077000.6 , HORVU4Hr1G077000.7
Wheat TraesCS4B02G297900 , TraesCS4B02G297900 , TraesCS4B02G297900 , TraesCS4D02G296700 , TraesCS4A02G007100 , TraesCS4A02G007100 , TraesCS4D02G296700
Populus -


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cDNA sequences
Sobic.001G004200


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.002G408900 adenyl cyclase, putative, expressed -
2 Sobic.003G405500 mannosyl-oligosaccharide glucosidase, putative, expressed K01228: mannosyl-oligosaccharide glucosidase
3 Sobic.004G208500 eukaryotic translation initiation factor 2A, putative, expressed K15026: translation initiation factor 2A
4 Sobic.001G474400 conserved oligomeric Golgi complex component 8, putative, expressed -
5 Sobic.002G125800 phosphoglucomutase, putative, expressed -
6 Sobic.001G015400 elongation factor, putative, expressed K02355: fusA, GFM, elongation factor G
7 Sobic.002G199400 growth regulator related protein, putative, expressed -
8 Sobic.004G283600 O-acyltransferase, putative, expressed K13519: LPT1, lysophospholipid acyltransferase
9 Sobic.010G179700 enoyl-CoA hydratase/isomerase family protein, putative, expressed K05605: 3-hydroxyisobutyryl-CoA hydrolase
10 Sobic.001G251600 SET domain protein 123, putative, expressed K11426: [histone H3]-lysine4/36 N-trimethyltransferase SMYD
11 Sobic.002G071100 expressed protein K17408: DAP3, small subunit ribosomal protein S29
12 Sobic.005G106200 expressed protein K10290: F-box protein 3
13 Sobic.001G301200 pattern formation protein EMB30, putative, expressed K18443: golgi-specific brefeldin A-resistance guanine nucleotide exchange factor 1
14 Sobic.010G139500 phospholipid-transporting ATPase, putative, expressed K01530: phospholipid-translocating ATPase
15 Sobic.002G364900 PPR repeat domain containing protein, putative, expressed -
16 Sobic.002G412700 histone-arginine methyltransferase CARM1, putative, expressed K05931: CARM1, type I protein arginine methyltransferase
17 Sobic.004G356200 expressed protein -
18 Sobic.003G143800 nodal modulator 1 precursor, putative, expressed -
19 Sobic.004G348600 tetratricopeptide repeat containing protein, putative, expressed -
20 Sobic.008G124800 expressed protein -


Gene co-expression network
sample Sobic001G004200 Sobic001G004200 Sobic002G408900 Sobic002G408900 Sobic001G004200--Sobic002G408900 Sobic003G405500 Sobic003G405500 Sobic001G004200--Sobic003G405500 Sobic004G208500 Sobic004G208500 Sobic001G004200--Sobic004G208500 Sobic001G474400 Sobic001G474400 Sobic001G004200--Sobic001G474400 Sobic002G125800 Sobic002G125800 Sobic001G004200--Sobic002G125800 Sobic001G015400 Sobic001G015400 Sobic001G004200--Sobic001G015400 Sobic002G199400 Sobic002G199400 Sobic001G004200--Sobic002G199400 Sobic004G283600 Sobic004G283600 Sobic001G004200--Sobic004G283600 Sobic010G179700 Sobic010G179700 Sobic001G004200--Sobic010G179700 Sobic002G150700 Sobic002G150700 Sobic002G408900--Sobic002G150700 Sobic009G249800 Sobic009G249800 Sobic002G408900--Sobic009G249800 Sobic002G408900--Sobic004G208500 Sobic002G246700 Sobic002G246700 Sobic002G408900--Sobic002G246700 Sobic002G408900--Sobic001G015400 Sobic002G398700 Sobic002G398700 Sobic002G408900--Sobic002G398700 Sobic006G193300 Sobic006G193300 Sobic002G408900--Sobic006G193300 Sobic002G160700 Sobic002G160700 Sobic002G408900--Sobic002G160700 Sobic001G099900 Sobic001G099900 Sobic002G408900--Sobic001G099900 Sobic001G145400 Sobic001G145400 Sobic003G405500--Sobic001G145400 Sobic008G124800 Sobic008G124800 Sobic003G405500--Sobic008G124800 Sobic002G430300 Sobic002G430300 Sobic003G405500--Sobic002G430300 Sobic009G084900 Sobic009G084900 Sobic003G405500--Sobic009G084900 Sobic006G166200 Sobic006G166200 Sobic003G405500--Sobic006G166200 Sobic004G141800 Sobic004G141800 Sobic003G405500--Sobic004G141800 Sobic006G077200 Sobic006G077200 Sobic003G405500--Sobic006G077200 Sobic010G059500 Sobic010G059500 Sobic003G405500--Sobic010G059500 Sobic003G314700 Sobic003G314700 Sobic003G405500--Sobic003G314700 Sobic001G467100 Sobic001G467100 Sobic004G208500--Sobic001G467100 Sobic004G208500--Sobic001G099900 Sobic004G208500--Sobic001G015400 Sobic004G208500--Sobic002G408900 Sobic004G208500--Sobic002G150700 Sobic001G161700 Sobic001G161700 Sobic004G208500--Sobic001G161700 Sobic010G223300 Sobic010G223300 Sobic004G208500--Sobic010G223300 Sobic005G110499 Sobic005G110499 Sobic004G208500--Sobic005G110499 Sobic005G163700 Sobic005G163700 Sobic004G208500--Sobic005G163700 Sobic001G474400--Sobic005G110499 Sobic003G397900 Sobic003G397900 Sobic001G474400--Sobic003G397900 Sobic007G145400 Sobic007G145400 Sobic001G474400--Sobic007G145400 Sobic001G097900 Sobic001G097900 Sobic001G474400--Sobic001G097900 Sobic005G114500 Sobic005G114500 Sobic001G474400--Sobic005G114500 Sobic005G106200 Sobic005G106200 Sobic001G474400--Sobic005G106200 Sobic010G223400 Sobic010G223400 Sobic001G474400--Sobic010G223400 Sobic001G474400--Sobic001G467100 Sobic006G265600 Sobic006G265600 Sobic001G474400--Sobic006G265600 Sobic005G031000 Sobic005G031000 Sobic002G125800--Sobic005G031000 Sobic006G237000 Sobic006G237000 Sobic002G125800--Sobic006G237000 Sobic001G533100 Sobic001G533100 Sobic002G125800--Sobic001G533100 Sobic001G200200 Sobic001G200200 Sobic002G125800--Sobic001G200200 Sobic002G125800--Sobic001G004200 Sobic004G356200 Sobic004G356200 Sobic002G125800--Sobic004G356200 Sobic010G192600 Sobic010G192600 Sobic002G125800--Sobic010G192600 Sobic003G166500 Sobic003G166500 Sobic002G125800--Sobic003G166500 Sobic004G030400 Sobic004G030400 Sobic002G125800--Sobic004G030400 Sobic001G015400--Sobic001G099900 Sobic001G015400--Sobic004G208500 Sobic007G005500 Sobic007G005500 Sobic001G015400--Sobic007G005500 Sobic006G021700 Sobic006G021700 Sobic001G015400--Sobic006G021700 Sobic003G143800 Sobic003G143800 Sobic001G015400--Sobic003G143800 Sobic006G260500 Sobic006G260500 Sobic001G015400--Sobic006G260500 Sobic003G182300 Sobic003G182300 Sobic001G015400--Sobic003G182300 Sobic001G015400--Sobic002G398700 Sobic006G106300 Sobic006G106300 Sobic001G015400--Sobic006G106300 Sobic002G199400--Sobic002G160700 Sobic001G151600 Sobic001G151600 Sobic002G199400--Sobic001G151600 Sobic001G469200 Sobic001G469200 Sobic002G199400--Sobic001G469200 Sobic001G358500 Sobic001G358500 Sobic002G199400--Sobic001G358500 Sobic006G259900 Sobic006G259900 Sobic002G199400--Sobic006G259900 Sobic006G282200 Sobic006G282200 Sobic002G199400--Sobic006G282200 Sobic005G175000 Sobic005G175000 Sobic002G199400--Sobic005G175000 Sobic002G199400--Sobic004G030400 Sobic005G144201 Sobic005G144201 Sobic002G199400--Sobic005G144201 Sobic009G256000 Sobic009G256000 Sobic004G283600--Sobic009G256000 Sobic004G060100 Sobic004G060100 Sobic004G283600--Sobic004G060100 Sobic007G161200 Sobic007G161200 Sobic004G283600--Sobic007G161200 Sobic005G018800 Sobic005G018800 Sobic004G283600--Sobic005G018800 Sobic005G004100 Sobic005G004100 Sobic004G283600--Sobic005G004100 Sobic008G021200 Sobic008G021200 Sobic004G283600--Sobic008G021200 Sobic003G200800 Sobic003G200800 Sobic004G283600--Sobic003G200800 Sobic003G165101 Sobic003G165101 Sobic004G283600--Sobic003G165101 Sobic004G283600--Sobic001G004200 Sobic010G179700--Sobic003G165101 Sobic010G179700--Sobic001G467100 Sobic010G179700--Sobic004G208500 Sobic003G395300 Sobic003G395300 Sobic010G179700--Sobic003G395300 Sobic002G144275 Sobic002G144275 Sobic010G179700--Sobic002G144275 Sobic010G179700--Sobic001G004200 Sobic008G072200 Sobic008G072200 Sobic010G179700--Sobic008G072200 Sobic004G075200 Sobic004G075200 Sobic010G179700--Sobic004G075200 Sobic010G179700--Sobic005G163700
Octagon: transcription factors


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