Gene annotation
Transcriptome id Sobic.002G402500.1
Synonym Sb02g041720
Functional annotation ribosomal protein, putative, expressed
UniProt C5X466
Pfam PF00380
Panther DB PTHR21569 PTHR21569:SF1
NCBI CDD KOG1753; 40S ribosomal protein S16
KEGG Orthology K02996; RP-S9, MRPS9, small subunit ribosomal protein S9
Gene Ontology GO:0006412; translation GO:0005840ribosome GO:0003735structural constituent of ribosome


Orthologs (automatic annotation)
TAIR AT3G49080 : Ribosomal protein S5 domain 2-like superfamily protein
RAP-DB (Rice) LOC_Os07g46440.1 : ribosomal protein, putative, expressed
MaizeGDB (Corn) Zm00025a049025
Brachypodium KQK14866 , KQK14865 , PNT74638 , PNT74639
Barley HORVU2Hr1G023120.1 , HORVU2Hr1G023120.2
Wheat TraesCS2A02G131800 , TraesCS2D02G133900 , TraesCS2B02G154400
Populus PNT11117


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cDNA sequences
Sobic.002G402500


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.003G326900 expressed protein -
2 Sobic.003G205400 ribosomal protein L25, putative, expressed K02897: RP-L25, large subunit ribosomal protein L25
3 Sobic.003G388900 PPR repeat domain containing protein, putative, expressed -
4 Sobic.001G060300 expressed protein -
5 Sobic.001G214900 expressed protein -
6 Sobic.001G522000 mitochondrial carrier protein, putative, expressed K05863: SLC25A4S, solute carrier family 25 (mitochondrial adenine nucleotide translocator), member 4/5/6/31
7 Sobic.006G041100 nuclear transport factor 2, putative, expressed -
8 Sobic.002G367800 PPR repeat domain containing protein, putative, expressed -
9 Sobic.003G113400 ribosomal protein L3, putative, expressed K02906: RP-L3, MRPL3, large subunit ribosomal protein L3
10 Sobic.002G423500 T-complex protein, putative, expressed K09498: T-complex protein 1 subunit zeta
11 Sobic.005G132700 acetyltransferase, GNAT family, putative, expressed K00670: NAA30, N-alpha-acetyltransferase 30
12 Sobic.010G277000 exosome complex exonuclease, putative, expressed K12589: RRP42, exosome complex component RRP42
13 Sobic.004G212100 PPR repeat domain containing protein, putative, expressed -
14 Sobic.007G048700 stomatin-like protein 2, putative, expressed -
15 Sobic.003G119400 PUR ALPHA-1, putative, expressed -
16 Sobic.001G473800 trpH, putative, expressed K07053: 3',5'-nucleoside bisphosphate phosphatase
17 Sobic.010G212200 synthase, putative, expressed K02377: TSTA3, GDP-L-fucose synthase
18 Sobic.006G020900 phosphoglycerate mutase, putative, expressed -
19 Sobic.010G134100 mitochondrial glycoprotein, putative, expressed K15414: complement component 1 Q subcomponent-binding protein, mitochondrial
20 Sobic.001G358500 GA20734-PA, putative, expressed -


Gene co-expression network
sample Sobic002G402500 Sobic002G402500 Sobic003G326900 Sobic003G326900 Sobic002G402500--Sobic003G326900 Sobic003G205400 Sobic003G205400 Sobic002G402500--Sobic003G205400 Sobic003G388900 Sobic003G388900 Sobic002G402500--Sobic003G388900 Sobic001G060300 Sobic001G060300 Sobic002G402500--Sobic001G060300 Sobic001G214900 Sobic001G214900 Sobic002G402500--Sobic001G214900 Sobic001G522000 Sobic001G522000 Sobic002G402500--Sobic001G522000 Sobic006G041100 Sobic006G041100 Sobic002G402500--Sobic006G041100 Sobic002G367800 Sobic002G367800 Sobic002G402500--Sobic002G367800 Sobic003G113400 Sobic003G113400 Sobic002G402500--Sobic003G113400 Sobic001G129400 Sobic001G129400 Sobic003G326900--Sobic001G129400 Sobic003G326900--Sobic002G402500 Sobic003G326900--Sobic001G060300 Sobic001G008800 Sobic001G008800 Sobic003G326900--Sobic001G008800 Sobic004G184000 Sobic004G184000 Sobic003G326900--Sobic004G184000 Sobic010G194200 Sobic010G194200 Sobic003G326900--Sobic010G194200 Sobic010G018000 Sobic010G018000 Sobic003G326900--Sobic010G018000 Sobic004G248900 Sobic004G248900 Sobic003G326900--Sobic004G248900 Sobic003G326900--Sobic001G214900 Sobic003G205400--Sobic002G402500 Sobic003G205400--Sobic001G214900 Sobic003G205400--Sobic001G522000 Sobic003G205400--Sobic003G388900 Sobic003G205400--Sobic002G367800 Sobic010G277000 Sobic010G277000 Sobic003G205400--Sobic010G277000 Sobic010G134100 Sobic010G134100 Sobic003G205400--Sobic010G134100 Sobic001G413100 Sobic001G413100 Sobic003G205400--Sobic001G413100 Sobic002G423500 Sobic002G423500 Sobic003G205400--Sobic002G423500 Sobic003G388900--Sobic002G367800 Sobic003G388900--Sobic002G402500 Sobic003G388900--Sobic001G522000 Sobic003G202100 Sobic003G202100 Sobic003G388900--Sobic003G202100 Sobic004G212100 Sobic004G212100 Sobic003G388900--Sobic004G212100 Sobic001G304000 Sobic001G304000 Sobic003G388900--Sobic001G304000 Sobic002G295900 Sobic002G295900 Sobic003G388900--Sobic002G295900 Sobic003G388900--Sobic001G413100 Sobic003G388900--Sobic003G205400 Sobic001G342200 Sobic001G342200 Sobic001G060300--Sobic001G342200 Sobic001G178500 Sobic001G178500 Sobic001G060300--Sobic001G178500 Sobic001G060300--Sobic001G214900 Sobic004G262300 Sobic004G262300 Sobic001G060300--Sobic004G262300 Sobic009G112900 Sobic009G112900 Sobic001G060300--Sobic009G112900 Sobic001G060300--Sobic002G402500 Sobic008G136800 Sobic008G136800 Sobic001G060300--Sobic008G136800 Sobic001G060300--Sobic010G194200 Sobic009G012800 Sobic009G012800 Sobic001G060300--Sobic009G012800 Sobic001G214900--Sobic001G060300 Sobic001G214900--Sobic002G367800 Sobic003G261100 Sobic003G261100 Sobic001G214900--Sobic003G261100 Sobic001G214900--Sobic003G205400 Sobic001G214900--Sobic010G134100 Sobic001G214900--Sobic010G277000 Sobic007G143000 Sobic007G143000 Sobic001G214900--Sobic007G143000 Sobic001G214900--Sobic002G402500 Sobic001G530800 Sobic001G530800 Sobic001G214900--Sobic001G530800 Sobic001G522000--Sobic002G367800 Sobic001G522000--Sobic002G423500 Sobic001G490500 Sobic001G490500 Sobic001G522000--Sobic001G490500 Sobic001G522000--Sobic006G041100 Sobic001G522000--Sobic003G388900 Sobic001G522000--Sobic003G205400 Sobic001G522000--Sobic002G402500 Sobic006G265600 Sobic006G265600 Sobic001G522000--Sobic006G265600 Sobic001G117800 Sobic001G117800 Sobic001G522000--Sobic001G117800 Sobic006G041100--Sobic002G423500 Sobic006G041100--Sobic006G265600 Sobic006G041100--Sobic001G522000 Sobic006G041100--Sobic002G402500 Sobic009G120500 Sobic009G120500 Sobic006G041100--Sobic009G120500 Sobic005G163700 Sobic005G163700 Sobic006G041100--Sobic005G163700 Sobic004G047200 Sobic004G047200 Sobic006G041100--Sobic004G047200 Sobic001G008500 Sobic001G008500 Sobic006G041100--Sobic001G008500 Sobic006G041100--Sobic001G530800 Sobic002G367800--Sobic004G212100 Sobic001G011000 Sobic001G011000 Sobic002G367800--Sobic001G011000 Sobic002G367800--Sobic003G388900 Sobic009G041800 Sobic009G041800 Sobic002G367800--Sobic009G041800 Sobic002G367800--Sobic001G522000 Sobic004G356300 Sobic004G356300 Sobic002G367800--Sobic004G356300 Sobic002G367800--Sobic001G214900 Sobic002G071100 Sobic002G071100 Sobic002G367800--Sobic002G071100 Sobic002G070300 Sobic002G070300 Sobic002G367800--Sobic002G070300 Sobic003G167000 Sobic003G167000 Sobic003G113400--Sobic003G167000 Sobic003G113400--Sobic009G041800 Sobic004G334200 Sobic004G334200 Sobic003G113400--Sobic004G334200 Sobic007G191600 Sobic007G191600 Sobic003G113400--Sobic007G191600 Sobic001G203600 Sobic001G203600 Sobic003G113400--Sobic001G203600 Sobic004G043600 Sobic004G043600 Sobic003G113400--Sobic004G043600 Sobic003G113400--Sobic002G402500 Sobic010G250000 Sobic010G250000 Sobic003G113400--Sobic010G250000 Sobic001G052100 Sobic001G052100 Sobic003G113400--Sobic001G052100
Octagon: transcription factors


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