Gene annotation
Transcriptome id Sobic.001G473800.1
Synonym Sb01g044400
Functional annotation trpH, putative, expressed
UniProt C5WUS3
Pfam PF02811
Panther DB PTHR30007 PTHR30007:SF19
NCBI CDD -
KEGG Orthology K07053; 3',5'-nucleoside bisphosphate phosphatase
Gene Ontology GO:0003824; catalytic activity


Orthologs (automatic annotation)
TAIR AT2G13840 : Polymerase/histidinol phosphatase-like
RAP-DB (Rice) LOC_Os03g09180.1 : trpH, putative, expressed
MaizeGDB (Corn) Zm00025a001073
Brachypodium KQK23179
Barley -
Wheat TraesCS4D02G267400 , TraesCS4D02G267400 , TraesCS4D02G267400 , TraesCS4A02G035300
Populus -


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cDNA sequences
Sobic.001G473800


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.005G111900 uncharacterized protein family UPF0016 domain containing protein, expressed -
2 Sobic.003G196200 elongation factor TS family protein, expressed -
3 Sobic.001G304000 enoyl-CoA hydratase/isomerase family protein, putative, expressed K05605: 3-hydroxyisobutyryl-CoA hydrolase
4 Sobic.001G387800 outer mitochondrial membrane porin, putative, expressed K11518: mitochondrial import receptor subunit TOM40
5 Sobic.008G110500 UDP-N-acetylglucosamine transferase subunit ALG13, putative, expressed K07432: beta-1,4-N-acetylglucosaminyltransferase
6 Sobic.001G178500 chloroplast 30S ribosomal protein S19, putative, expressed K02965: RP-S19, small subunit ribosomal protein S19
7 Sobic.002G199400 growth regulator related protein, putative, expressed -
8 Sobic.002G402500 ribosomal protein, putative, expressed K02996: RP-S9, MRPS9, small subunit ribosomal protein S9
9 Sobic.006G029000 nicotiana lesion-inducing like, putative, expressed -
10 Sobic.003G261800 expressed protein -
11 Sobic.001G358500 GA20734-PA, putative, expressed -
12 Sobic.010G040900 trafficking protein particle complex subunit 4, putative, expressed -
13 Sobic.001G458700 26S protease regulatory subunit 6B, putative, expressed K03063: PSMC4, 26S proteasome regulatory subunit T3
14 Sobic.001G008100 expressed protein K17966: transmembrane protein 70, mitochondrial
15 Sobic.003G338500 endoplasmic reticulum-Golgi intermediate compartment protein 3, putative, expressed -
16 Sobic.001G077900 SSA2 - 2S albumin seed storage family protein precursor, putative, expressed -
17 Sobic.003G388900 PPR repeat domain containing protein, putative, expressed -
18 Sobic.008G145100 glycosyl transferase, group 1 domain containing protein, expressed K03844: alpha-1,2-mannosyltransferase
19 Sobic.003G205400 ribosomal protein L25, putative, expressed K02897: RP-L25, large subunit ribosomal protein L25
20 Sobic.003G374000 ubiquitin-like domain-containing CTD phosphatase 1, putative, expressed K17618: ubiquitin-like domain-containing CTD phosphatase 1


Gene co-expression network
sample Sobic001G473800 Sobic001G473800 Sobic005G111900 Sobic005G111900 Sobic001G473800--Sobic005G111900 Sobic003G196200 Sobic003G196200 Sobic001G473800--Sobic003G196200 Sobic001G304000 Sobic001G304000 Sobic001G473800--Sobic001G304000 Sobic001G387800 Sobic001G387800 Sobic001G473800--Sobic001G387800 Sobic008G110500 Sobic008G110500 Sobic001G473800--Sobic008G110500 Sobic001G178500 Sobic001G178500 Sobic001G473800--Sobic001G178500 Sobic002G199400 Sobic002G199400 Sobic001G473800--Sobic002G199400 Sobic002G402500 Sobic002G402500 Sobic001G473800--Sobic002G402500 Sobic006G029000 Sobic006G029000 Sobic001G473800--Sobic006G029000 Sobic007G061400 Sobic007G061400 Sobic005G111900--Sobic007G061400 Sobic001G014800 Sobic001G014800 Sobic005G111900--Sobic001G014800 Sobic005G111900--Sobic006G029000 Sobic006G002201 Sobic006G002201 Sobic005G111900--Sobic006G002201 Sobic004G194900 Sobic004G194900 Sobic005G111900--Sobic004G194900 Sobic003G349300 Sobic003G349300 Sobic005G111900--Sobic003G349300 Sobic010G205300 Sobic010G205300 Sobic005G111900--Sobic010G205300 Sobic005G111900--Sobic001G473800 Sobic009G149500 Sobic009G149500 Sobic005G111900--Sobic009G149500 Sobic003G196200--Sobic001G387800 Sobic008G102600 Sobic008G102600 Sobic003G196200--Sobic008G102600 Sobic001G077900 Sobic001G077900 Sobic003G196200--Sobic001G077900 Sobic004G045300 Sobic004G045300 Sobic003G196200--Sobic004G045300 Sobic001G161700 Sobic001G161700 Sobic003G196200--Sobic001G161700 Sobic003G196200--Sobic001G178500 Sobic003G196200--Sobic008G110500 Sobic004G000100 Sobic004G000100 Sobic003G196200--Sobic004G000100 Sobic003G196200--Sobic001G473800 Sobic003G202100 Sobic003G202100 Sobic001G304000--Sobic003G202100 Sobic008G171400 Sobic008G171400 Sobic001G304000--Sobic008G171400 Sobic005G018800 Sobic005G018800 Sobic001G304000--Sobic005G018800 Sobic002G071100 Sobic002G071100 Sobic001G304000--Sobic002G071100 Sobic003G388900 Sobic003G388900 Sobic001G304000--Sobic003G388900 Sobic006G020900 Sobic006G020900 Sobic001G304000--Sobic006G020900 Sobic001G304000--Sobic001G178500 Sobic007G206300 Sobic007G206300 Sobic001G304000--Sobic007G206300 Sobic008G168200 Sobic008G168200 Sobic001G304000--Sobic008G168200 Sobic001G387800--Sobic003G196200 Sobic001G387800--Sobic001G178500 Sobic001G008100 Sobic001G008100 Sobic001G387800--Sobic001G008100 Sobic004G039400 Sobic004G039400 Sobic001G387800--Sobic004G039400 Sobic007G119600 Sobic007G119600 Sobic001G387800--Sobic007G119600 Sobic009G191400 Sobic009G191400 Sobic001G387800--Sobic009G191400 Sobic002G079700 Sobic002G079700 Sobic001G387800--Sobic002G079700 Sobic001G387800--Sobic007G206300 Sobic001G465400 Sobic001G465400 Sobic001G387800--Sobic001G465400 Sobic001G443200 Sobic001G443200 Sobic008G110500--Sobic001G443200 Sobic003G148900 Sobic003G148900 Sobic008G110500--Sobic003G148900 Sobic008G110500--Sobic008G102600 Sobic008G110500--Sobic001G387800 Sobic008G145100 Sobic008G145100 Sobic008G110500--Sobic008G145100 Sobic010G040900 Sobic010G040900 Sobic008G110500--Sobic010G040900 Sobic005G184200 Sobic005G184200 Sobic008G110500--Sobic005G184200 Sobic001G542900 Sobic001G542900 Sobic008G110500--Sobic001G542900 Sobic008G110500--Sobic003G196200 Sobic001G178500--Sobic002G079700 Sobic001G178500--Sobic001G387800 Sobic001G060300 Sobic001G060300 Sobic001G178500--Sobic001G060300 Sobic001G178500--Sobic010G040900 Sobic001G178500--Sobic007G119600 Sobic003G135600 Sobic003G135600 Sobic001G178500--Sobic003G135600 Sobic001G178500--Sobic009G191400 Sobic007G171500 Sobic007G171500 Sobic001G178500--Sobic007G171500 Sobic001G178500--Sobic001G443200 Sobic002G160700 Sobic002G160700 Sobic002G199400--Sobic002G160700 Sobic001G151600 Sobic001G151600 Sobic002G199400--Sobic001G151600 Sobic001G469200 Sobic001G469200 Sobic002G199400--Sobic001G469200 Sobic001G358500 Sobic001G358500 Sobic002G199400--Sobic001G358500 Sobic006G259900 Sobic006G259900 Sobic002G199400--Sobic006G259900 Sobic006G282200 Sobic006G282200 Sobic002G199400--Sobic006G282200 Sobic005G175000 Sobic005G175000 Sobic002G199400--Sobic005G175000 Sobic004G030400 Sobic004G030400 Sobic002G199400--Sobic004G030400 Sobic005G144201 Sobic005G144201 Sobic002G199400--Sobic005G144201 Sobic003G326900 Sobic003G326900 Sobic002G402500--Sobic003G326900 Sobic003G205400 Sobic003G205400 Sobic002G402500--Sobic003G205400 Sobic002G402500--Sobic003G388900 Sobic002G402500--Sobic001G060300 Sobic001G214900 Sobic001G214900 Sobic002G402500--Sobic001G214900 Sobic001G522000 Sobic001G522000 Sobic002G402500--Sobic001G522000 Sobic006G041100 Sobic006G041100 Sobic002G402500--Sobic006G041100 Sobic002G367800 Sobic002G367800 Sobic002G402500--Sobic002G367800 Sobic003G113400 Sobic003G113400 Sobic002G402500--Sobic003G113400 Sobic006G029000--Sobic005G111900 Sobic006G029000--Sobic001G077900 Sobic006G029000--Sobic009G149500 Sobic001G112400 Sobic001G112400 Sobic006G029000--Sobic001G112400 Sobic001G338400 Sobic001G338400 Sobic006G029000--Sobic001G338400 Sobic006G029000--Sobic001G443200 Sobic009G089700 Sobic009G089700 Sobic006G029000--Sobic009G089700 Sobic004G181900 Sobic004G181900 Sobic006G029000--Sobic004G181900 Sobic006G029000--Sobic003G196200
Octagon: transcription factors


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