Gene annotation
Transcriptome id Sobic.003G326900.1
Synonym Sb03g037290
Functional annotation expressed protein
UniProt C5XMH5
Pfam PF12824
Panther DB PTHR21133 PTHR21133:SF2
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT5G62270 : -
RAP-DB (Rice) LOC_Os01g58750.1 : expressed protein
MaizeGDB (Corn) Zm00025a027181 , Zm00025a039835
Brachypodium KQK10193
Barley HORVU3Hr1G078540.2 , HORVU3Hr1G078540.1
Wheat TraesCS3D02G324100 , TraesCS3B02G360700 , TraesCS3A02G330700
Populus -


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cDNA sequences
Sobic.003G326900


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G129400 ribosomal protein-related, putative, expressed K02970: RP-S21, MRPS21, small subunit ribosomal protein S21
2 Sobic.002G402500 ribosomal protein, putative, expressed K02996: RP-S9, MRPS9, small subunit ribosomal protein S9
3 Sobic.001G060300 expressed protein -
4 Sobic.001G008800 expressed protein -
5 Sobic.004G184000 SFT2, putative, expressed -
6 Sobic.010G194200 expressed protein -
7 Sobic.010G018000 39S ribosomal protein L47, mitochondrial precursor, putative, expressed K17428: MRPL47, large subunit ribosomal protein L47
8 Sobic.004G248900 50S ribosomal protein L17, putative, expressed K02879: RP-L17, MRPL17, large subunit ribosomal protein L17
9 Sobic.001G214900 expressed protein -
10 Sobic.002G367800 PPR repeat domain containing protein, putative, expressed -
11 Sobic.006G020900 phosphoglycerate mutase, putative, expressed -
12 Sobic.001G451901 - -
13 Sobic.001G522000 mitochondrial carrier protein, putative, expressed K05863: SLC25A4S, solute carrier family 25 (mitochondrial adenine nucleotide translocator), member 4/5/6/31
14 Sobic.001G176900 mTERF family protein, expressed K15032: mTERF domain-containing protein, mitochondrial
15 Sobic.007G143000 ribosomal protein S17, putative, expressed K02961: RP-S17, MRPS17, small subunit ribosomal protein S17
16 Sobic.002G295900 ribosomal protein S15 containing protein, expressed -
17 Sobic.001G473400 NADH dehydrogenase 1 alpha subcomplex subunit 13, putative, expressed K11353: NADH dehydrogenase (ubiquinone) 1 alpha subcomplex subunit 13
18 Sobic.001G530800 T-complex protein, putative, expressed K09496: T-complex protein 1 subunit delta
19 Sobic.003G388700 ribosomal protein L13, putative, expressed K02871: RP-L13, MRPL13, large subunit ribosomal protein L13
20 Sobic.005G105500 expressed protein -


Gene co-expression network
sample Sobic003G326900 Sobic003G326900 Sobic001G129400 Sobic001G129400 Sobic003G326900--Sobic001G129400 Sobic002G402500 Sobic002G402500 Sobic003G326900--Sobic002G402500 Sobic001G060300 Sobic001G060300 Sobic003G326900--Sobic001G060300 Sobic001G008800 Sobic001G008800 Sobic003G326900--Sobic001G008800 Sobic004G184000 Sobic004G184000 Sobic003G326900--Sobic004G184000 Sobic010G194200 Sobic010G194200 Sobic003G326900--Sobic010G194200 Sobic010G018000 Sobic010G018000 Sobic003G326900--Sobic010G018000 Sobic004G248900 Sobic004G248900 Sobic003G326900--Sobic004G248900 Sobic001G214900 Sobic001G214900 Sobic003G326900--Sobic001G214900 Sobic001G129400--Sobic003G326900 Sobic003G003000 Sobic003G003000 Sobic001G129400--Sobic003G003000 Sobic001G129400--Sobic010G194200 Sobic001G129400--Sobic001G008800 Sobic001G129400--Sobic004G248900 Sobic001G129400--Sobic010G018000 Sobic001G451901 Sobic001G451901 Sobic001G129400--Sobic001G451901 Sobic001G129400--Sobic001G060300 Sobic001G473400 Sobic001G473400 Sobic001G129400--Sobic001G473400 Sobic002G402500--Sobic003G326900 Sobic003G205400 Sobic003G205400 Sobic002G402500--Sobic003G205400 Sobic003G388900 Sobic003G388900 Sobic002G402500--Sobic003G388900 Sobic002G402500--Sobic001G060300 Sobic002G402500--Sobic001G214900 Sobic001G522000 Sobic001G522000 Sobic002G402500--Sobic001G522000 Sobic006G041100 Sobic006G041100 Sobic002G402500--Sobic006G041100 Sobic002G367800 Sobic002G367800 Sobic002G402500--Sobic002G367800 Sobic003G113400 Sobic003G113400 Sobic002G402500--Sobic003G113400 Sobic001G342200 Sobic001G342200 Sobic001G060300--Sobic001G342200 Sobic001G178500 Sobic001G178500 Sobic001G060300--Sobic001G178500 Sobic001G060300--Sobic001G214900 Sobic004G262300 Sobic004G262300 Sobic001G060300--Sobic004G262300 Sobic009G112900 Sobic009G112900 Sobic001G060300--Sobic009G112900 Sobic001G060300--Sobic002G402500 Sobic008G136800 Sobic008G136800 Sobic001G060300--Sobic008G136800 Sobic001G060300--Sobic010G194200 Sobic009G012800 Sobic009G012800 Sobic001G060300--Sobic009G012800 Sobic001G008800--Sobic001G129400 Sobic001G008800--Sobic003G326900 Sobic001G132900 Sobic001G132900 Sobic001G008800--Sobic001G132900 Sobic001G008800--Sobic003G003000 Sobic004G136500 Sobic004G136500 Sobic001G008800--Sobic004G136500 Sobic004G117800 Sobic004G117800 Sobic001G008800--Sobic004G117800 Sobic001G144600 Sobic001G144600 Sobic001G008800--Sobic001G144600 Sobic006G087400 Sobic006G087400 Sobic001G008800--Sobic006G087400 Sobic001G008800--Sobic001G451901 Sobic007G165300 Sobic007G165300 Sobic004G184000--Sobic007G165300 Sobic005G129201 Sobic005G129201 Sobic004G184000--Sobic005G129201 Sobic004G184000--Sobic003G326900 Sobic010G258000 Sobic010G258000 Sobic004G184000--Sobic010G258000 Sobic004G184000--Sobic001G451901 Sobic003G348200 Sobic003G348200 Sobic004G184000--Sobic003G348200 Sobic007G217400 Sobic007G217400 Sobic004G184000--Sobic007G217400 Sobic001G110300 Sobic001G110300 Sobic004G184000--Sobic001G110300 Sobic001G116000 Sobic001G116000 Sobic004G184000--Sobic001G116000 Sobic010G194200--Sobic001G129400 Sobic010G194200--Sobic001G060300 Sobic010G194200--Sobic003G326900 Sobic010G194200--Sobic001G451901 Sobic010G194200--Sobic001G473400 Sobic005G132700 Sobic005G132700 Sobic010G194200--Sobic005G132700 Sobic004G106700 Sobic004G106700 Sobic010G194200--Sobic004G106700 Sobic006G153200 Sobic006G153200 Sobic010G194200--Sobic006G153200 Sobic010G194200--Sobic001G110300 Sobic010G018000--Sobic003G326900 Sobic010G018000--Sobic001G129400 Sobic010G018000--Sobic003G003000 Sobic007G034400 Sobic007G034400 Sobic010G018000--Sobic007G034400 Sobic007G143000 Sobic007G143000 Sobic010G018000--Sobic007G143000 Sobic002G045100 Sobic002G045100 Sobic010G018000--Sobic002G045100 Sobic003G367900 Sobic003G367900 Sobic010G018000--Sobic003G367900 Sobic007G108100 Sobic007G108100 Sobic010G018000--Sobic007G108100 Sobic001G431700 Sobic001G431700 Sobic010G018000--Sobic001G431700 Sobic005G105500 Sobic005G105500 Sobic004G248900--Sobic005G105500 Sobic005G191600 Sobic005G191600 Sobic004G248900--Sobic005G191600 Sobic004G248900--Sobic001G129400 Sobic004G248900--Sobic007G143000 Sobic004G248900--Sobic001G060300 Sobic010G013900 Sobic010G013900 Sobic004G248900--Sobic010G013900 Sobic001G117400 Sobic001G117400 Sobic004G248900--Sobic001G117400 Sobic004G248900--Sobic003G326900 Sobic001G404100 Sobic001G404100 Sobic004G248900--Sobic001G404100 Sobic001G214900--Sobic001G060300 Sobic001G214900--Sobic002G367800 Sobic003G261100 Sobic003G261100 Sobic001G214900--Sobic003G261100 Sobic001G214900--Sobic003G205400 Sobic010G134100 Sobic010G134100 Sobic001G214900--Sobic010G134100 Sobic010G277000 Sobic010G277000 Sobic001G214900--Sobic010G277000 Sobic001G214900--Sobic007G143000 Sobic001G214900--Sobic002G402500 Sobic001G530800 Sobic001G530800 Sobic001G214900--Sobic001G530800
Octagon: transcription factors


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