Gene annotation
Transcriptome id Sobic.010G018000.1
Synonym Sb10g001740
Functional annotation 39S ribosomal protein L47, mitochondrial precursor, putative, expressed
UniProt C5Z380
Pfam PF00831
Panther DB PTHR21183 PTHR21183:SF18
NCBI CDD -
KEGG Orthology K17428; MRPL47, large subunit ribosomal protein L47
Gene Ontology GO:0006412; translation GO:0005840ribosome GO:0005622intracellular GO:0003735structural constituent of ribosome GO:0005761mitochondrial ribosome


Orthologs (automatic annotation)
TAIR AT1G07830 : ribosomal protein L29 family protein
RAP-DB (Rice) LOC_Os06g03790.1 : 39S ribosomal protein L47, mitochondrial precursor, putative, expressed
MaizeGDB (Corn) Zm00025a050200
Brachypodium -
Barley HORVU7Hr1G011290.1
Wheat TraesCS3B02G098500 , TraesCS7D02G054700
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.003G326900 expressed protein -
2 Sobic.001G129400 ribosomal protein-related, putative, expressed K02970: RP-S21, MRPS21, small subunit ribosomal protein S21
3 Sobic.003G003000 DNA-binding protein-related, putative, expressed K07466: RFA1, RPA1, replication factor A1
4 Sobic.007G034400 RNA recognition motif containing protein, putative, expressed -
5 Sobic.007G143000 ribosomal protein S17, putative, expressed K02961: RP-S17, MRPS17, small subunit ribosomal protein S17
6 Sobic.002G045100 LSM domain containing protein, expressed K11086: SNRPB, small nuclear ribonucleoprotein B and B'
7 Sobic.003G367900 LSM domain containing protein, expressed K12622: U6 snRNA-associated Sm-like protein LSm3
8 Sobic.007G108100 co-chaperone protein SBA1, putative, expressed -
9 Sobic.001G431700 expressed protein K18171: COX assembly mitochondrial protein 1
10 Sobic.001G132900 expressed protein -
11 Sobic.006G281200 csAtPR5, putative, expressed -
12 Sobic.004G248900 50S ribosomal protein L17, putative, expressed K02879: RP-L17, MRPL17, large subunit ribosomal protein L17
13 Sobic.008G103900 glycine-rich RNA-binding protein 7, putative, expressed K12741: heterogeneous nuclear ribonucleoprotein A1/A3
14 Sobic.007G043600 LSM domain containing protein, expressed K12621: U6 snRNA-associated Sm-like protein LSm2
15 Sobic.006G243400 D-3-phosphoglycerate dehydrogenase, chloroplast precursor, putative, expressed K00058: serA, D-3-phosphoglycerate dehydrogenase / 2-oxoglutarate reductase
16 Sobic.001G214900 expressed protein -
17 Sobic.010G013900 DAG protein, chloroplast precursor, putative, expressed -
18 Sobic.003G287300 50S ribosomal protein L20, putative, expressed K02887: RP-L20, MRPL20, large subunit ribosomal protein L20
19 Sobic.010G134100 mitochondrial glycoprotein, putative, expressed K15414: complement component 1 Q subcomponent-binding protein, mitochondrial
20 Sobic.001G530800 T-complex protein, putative, expressed K09496: T-complex protein 1 subunit delta


Gene co-expression network
sample Sobic010G018000 Sobic010G018000 Sobic003G326900 Sobic003G326900 Sobic010G018000--Sobic003G326900 Sobic001G129400 Sobic001G129400 Sobic010G018000--Sobic001G129400 Sobic003G003000 Sobic003G003000 Sobic010G018000--Sobic003G003000 Sobic007G034400 Sobic007G034400 Sobic010G018000--Sobic007G034400 Sobic007G143000 Sobic007G143000 Sobic010G018000--Sobic007G143000 Sobic002G045100 Sobic002G045100 Sobic010G018000--Sobic002G045100 Sobic003G367900 Sobic003G367900 Sobic010G018000--Sobic003G367900 Sobic007G108100 Sobic007G108100 Sobic010G018000--Sobic007G108100 Sobic001G431700 Sobic001G431700 Sobic010G018000--Sobic001G431700 Sobic003G326900--Sobic001G129400 Sobic002G402500 Sobic002G402500 Sobic003G326900--Sobic002G402500 Sobic001G060300 Sobic001G060300 Sobic003G326900--Sobic001G060300 Sobic001G008800 Sobic001G008800 Sobic003G326900--Sobic001G008800 Sobic004G184000 Sobic004G184000 Sobic003G326900--Sobic004G184000 Sobic010G194200 Sobic010G194200 Sobic003G326900--Sobic010G194200 Sobic003G326900--Sobic010G018000 Sobic004G248900 Sobic004G248900 Sobic003G326900--Sobic004G248900 Sobic001G214900 Sobic001G214900 Sobic003G326900--Sobic001G214900 Sobic001G129400--Sobic003G326900 Sobic001G129400--Sobic003G003000 Sobic001G129400--Sobic010G194200 Sobic001G129400--Sobic001G008800 Sobic001G129400--Sobic004G248900 Sobic001G129400--Sobic010G018000 Sobic001G451901 Sobic001G451901 Sobic001G129400--Sobic001G451901 Sobic001G129400--Sobic001G060300 Sobic001G473400 Sobic001G473400 Sobic001G129400--Sobic001G473400 Sobic003G003000--Sobic001G129400 Sobic001G132900 Sobic001G132900 Sobic003G003000--Sobic001G132900 Sobic006G281200 Sobic006G281200 Sobic003G003000--Sobic006G281200 Sobic003G003000--Sobic010G018000 Sobic003G003000--Sobic001G008800 Sobic004G018400 Sobic004G018400 Sobic003G003000--Sobic004G018400 Sobic002G117200 Sobic002G117200 Sobic003G003000--Sobic002G117200 Sobic010G094800 Sobic010G094800 Sobic003G003000--Sobic010G094800 Sobic005G127100 Sobic005G127100 Sobic003G003000--Sobic005G127100 Sobic009G114400 Sobic009G114400 Sobic007G034400--Sobic009G114400 Sobic005G164700 Sobic005G164700 Sobic007G034400--Sobic005G164700 Sobic008G103900 Sobic008G103900 Sobic007G034400--Sobic008G103900 Sobic003G015400 Sobic003G015400 Sobic007G034400--Sobic003G015400 Sobic001G058900 Sobic001G058900 Sobic007G034400--Sobic001G058900 Sobic003G025200 Sobic003G025200 Sobic007G034400--Sobic003G025200 Sobic001G225700 Sobic001G225700 Sobic007G034400--Sobic001G225700 Sobic001G510800 Sobic001G510800 Sobic007G034400--Sobic001G510800 Sobic007G034400--Sobic002G045100 Sobic007G143000--Sobic002G045100 Sobic007G143000--Sobic001G214900 Sobic003G160900 Sobic003G160900 Sobic007G143000--Sobic003G160900 Sobic007G143000--Sobic004G248900 Sobic006G243400 Sobic006G243400 Sobic007G143000--Sobic006G243400 Sobic007G143000--Sobic010G018000 Sobic007G143000--Sobic007G034400 Sobic007G143000--Sobic003G326900 Sobic007G143000--Sobic005G164700 Sobic002G045100--Sobic007G143000 Sobic002G045100--Sobic005G164700 Sobic009G012700 Sobic009G012700 Sobic002G045100--Sobic009G012700 Sobic002G319200 Sobic002G319200 Sobic002G045100--Sobic002G319200 Sobic002G045100--Sobic003G160900 Sobic002G045100--Sobic007G034400 Sobic004G002350 Sobic004G002350 Sobic002G045100--Sobic004G002350 Sobic002G045100--Sobic010G018000 Sobic001G371100 Sobic001G371100 Sobic002G045100--Sobic001G371100 Sobic001G404100 Sobic001G404100 Sobic003G367900--Sobic001G404100 Sobic006G052400 Sobic006G052400 Sobic003G367900--Sobic006G052400 Sobic001G096100 Sobic001G096100 Sobic003G367900--Sobic001G096100 Sobic003G367900--Sobic006G281200 Sobic003G127700 Sobic003G127700 Sobic003G367900--Sobic003G127700 Sobic002G331300 Sobic002G331300 Sobic003G367900--Sobic002G331300 Sobic004G175700 Sobic004G175700 Sobic003G367900--Sobic004G175700 Sobic009G258600 Sobic009G258600 Sobic003G367900--Sobic009G258600 Sobic008G100000 Sobic008G100000 Sobic003G367900--Sobic008G100000 Sobic010G001800 Sobic010G001800 Sobic007G108100--Sobic010G001800 Sobic007G108100--Sobic010G018000 Sobic003G011100 Sobic003G011100 Sobic007G108100--Sobic003G011100 Sobic003G211100 Sobic003G211100 Sobic007G108100--Sobic003G211100 Sobic007G108100--Sobic002G045100 Sobic007G108100--Sobic009G012700 Sobic001G493400 Sobic001G493400 Sobic007G108100--Sobic001G493400 Sobic001G530800 Sobic001G530800 Sobic007G108100--Sobic001G530800 Sobic009G211700 Sobic009G211700 Sobic007G108100--Sobic009G211700 Sobic008G018000 Sobic008G018000 Sobic001G431700--Sobic008G018000 Sobic001G431700--Sobic009G012700 Sobic006G079900 Sobic006G079900 Sobic001G431700--Sobic006G079900 Sobic003G287300 Sobic003G287300 Sobic001G431700--Sobic003G287300 Sobic001G431700--Sobic010G018000 Sobic008G093200 Sobic008G093200 Sobic001G431700--Sobic008G093200 Sobic010G013900 Sobic010G013900 Sobic001G431700--Sobic010G013900 Sobic001G431700--Sobic006G052400 Sobic002G371200 Sobic002G371200 Sobic001G431700--Sobic002G371200
Octagon: transcription factors


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