Gene annotation
Transcriptome id Sobic.007G043600.1
Synonym Sb07g003620
Functional annotation LSM domain containing protein, expressed
UniProt C5YGY2
Pfam PF01423
Panther DB PTHR13829
NCBI CDD KOG3448; Predicted snRNP core protein
KEGG Orthology K12621; U6 snRNA-associated Sm-like protein LSm2
Gene Ontology GO:0006397; mRNA processing


Orthologs (automatic annotation)
TAIR AT1G03330 : Small nuclear ribonucleoprotein family protein
RAP-DB (Rice) LOC_Os04g39444.1 : LSM domain containing protein, expressed
MaizeGDB (Corn) -
Brachypodium KQJ95389 , KQJ95388 , PNT66786
Barley -
Wheat TraesCS7D02G297400 , TraesCS7B02G202200 , TraesCS7A02G302100
Populus -


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cDNA sequences
Sobic.007G043600


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.003G003000 DNA-binding protein-related, putative, expressed K07466: RFA1, RPA1, replication factor A1
2 Sobic.006G281200 csAtPR5, putative, expressed -
3 Sobic.010G018000 39S ribosomal protein L47, mitochondrial precursor, putative, expressed K17428: MRPL47, large subunit ribosomal protein L47
4 Sobic.001G473400 NADH dehydrogenase 1 alpha subcomplex subunit 13, putative, expressed K11353: NADH dehydrogenase (ubiquinone) 1 alpha subcomplex subunit 13
5 Sobic.006G079900 COP9 signalosome complex subunit 8, putative, expressed K12181: COPS8, COP9 signalosome complex subunit 8
6 Sobic.009G188300 universal stress protein domain containing protein, putative, expressed -
7 Sobic.009G124400 similar to Putative uncharacterized protein(PubMedID : 29862293)@LSM domain containing protein, expressed K12624: U6 snRNA-associated Sm-like protein LSm5
8 Sobic.004G137900 wiskott-Aldrich syndrome protein family member 2, putative, expressed -
9 Sobic.006G276200 F-box domain containing protein, expressed -
10 Sobic.001G530800 T-complex protein, putative, expressed K09496: T-complex protein 1 subunit delta
11 Sobic.010G258000 peptidyl-prolyl cis-trans isomerase, putative, expressed K01802: peptidylprolyl isomerase
12 Sobic.001G132900 expressed protein -
13 Sobic.003G248300 kinase, pfkB family, putative, expressed K00852: rbsK, ribokinase
14 Sobic.001G129400 ribosomal protein-related, putative, expressed K02970: RP-S21, MRPS21, small subunit ribosomal protein S21
15 Sobic.009G072000 phosphoribosylformylglycinamidine synthase, putative, expressed K01933: phosphoribosylformylglycinamidine cyclo-ligase
16 Sobic.001G544100 peptidyl-prolyl cis-trans isomerase, cyclophilin type, putative, expressed -
17 Sobic.003G190800 GA18326-PA, putative, expressed -
18 Sobic.002G279000 peptidase, T1 family, putative, expressed K02731: 20S proteasome subunit alpha 4
19 Sobic.003G326900 expressed protein -
20 Sobic.006G020900 phosphoglycerate mutase, putative, expressed -


Gene co-expression network
sample Sobic007G043600 Sobic007G043600 Sobic003G003000 Sobic003G003000 Sobic007G043600--Sobic003G003000 Sobic006G281200 Sobic006G281200 Sobic007G043600--Sobic006G281200 Sobic010G018000 Sobic010G018000 Sobic007G043600--Sobic010G018000 Sobic001G473400 Sobic001G473400 Sobic007G043600--Sobic001G473400 Sobic006G079900 Sobic006G079900 Sobic007G043600--Sobic006G079900 Sobic009G188300 Sobic009G188300 Sobic007G043600--Sobic009G188300 Sobic009G124400 Sobic009G124400 Sobic007G043600--Sobic009G124400 Sobic004G137900 Sobic004G137900 Sobic007G043600--Sobic004G137900 Sobic006G276200 Sobic006G276200 Sobic007G043600--Sobic006G276200 Sobic001G129400 Sobic001G129400 Sobic003G003000--Sobic001G129400 Sobic001G132900 Sobic001G132900 Sobic003G003000--Sobic001G132900 Sobic003G003000--Sobic006G281200 Sobic003G003000--Sobic010G018000 Sobic001G008800 Sobic001G008800 Sobic003G003000--Sobic001G008800 Sobic004G018400 Sobic004G018400 Sobic003G003000--Sobic004G018400 Sobic002G117200 Sobic002G117200 Sobic003G003000--Sobic002G117200 Sobic010G094800 Sobic010G094800 Sobic003G003000--Sobic010G094800 Sobic005G127100 Sobic005G127100 Sobic003G003000--Sobic005G127100 Sobic001G428100 Sobic001G428100 Sobic006G281200--Sobic001G428100 Sobic006G281200--Sobic003G003000 Sobic001G025600 Sobic001G025600 Sobic006G281200--Sobic001G025600 Sobic009G131100 Sobic009G131100 Sobic006G281200--Sobic009G131100 Sobic007G091000 Sobic007G091000 Sobic006G281200--Sobic007G091000 Sobic001G404100 Sobic001G404100 Sobic006G281200--Sobic001G404100 Sobic008G100000 Sobic008G100000 Sobic006G281200--Sobic008G100000 Sobic003G367900 Sobic003G367900 Sobic006G281200--Sobic003G367900 Sobic009G130400 Sobic009G130400 Sobic006G281200--Sobic009G130400 Sobic003G326900 Sobic003G326900 Sobic010G018000--Sobic003G326900 Sobic010G018000--Sobic001G129400 Sobic010G018000--Sobic003G003000 Sobic007G034400 Sobic007G034400 Sobic010G018000--Sobic007G034400 Sobic007G143000 Sobic007G143000 Sobic010G018000--Sobic007G143000 Sobic002G045100 Sobic002G045100 Sobic010G018000--Sobic002G045100 Sobic010G018000--Sobic003G367900 Sobic007G108100 Sobic007G108100 Sobic010G018000--Sobic007G108100 Sobic001G431700 Sobic001G431700 Sobic010G018000--Sobic001G431700 Sobic010G258000 Sobic010G258000 Sobic001G473400--Sobic010G258000 Sobic003G170300 Sobic003G170300 Sobic001G473400--Sobic003G170300 Sobic009G016500 Sobic009G016500 Sobic001G473400--Sobic009G016500 Sobic009G240700 Sobic009G240700 Sobic001G473400--Sobic009G240700 Sobic003G388700 Sobic003G388700 Sobic001G473400--Sobic003G388700 Sobic006G020900 Sobic006G020900 Sobic001G473400--Sobic006G020900 Sobic001G282500 Sobic001G282500 Sobic001G473400--Sobic001G282500 Sobic002G395000 Sobic002G395000 Sobic001G473400--Sobic002G395000 Sobic002G308300 Sobic002G308300 Sobic001G473400--Sobic002G308300 Sobic007G217400 Sobic007G217400 Sobic006G079900--Sobic007G217400 Sobic006G079900--Sobic009G124400 Sobic003G190800 Sobic003G190800 Sobic006G079900--Sobic003G190800 Sobic002G331300 Sobic002G331300 Sobic006G079900--Sobic002G331300 Sobic003G028100 Sobic003G028100 Sobic006G079900--Sobic003G028100 Sobic001G542900 Sobic001G542900 Sobic006G079900--Sobic001G542900 Sobic006G079900--Sobic001G431700 Sobic006G079900--Sobic003G367900 Sobic006G079900--Sobic001G404100 Sobic001G261549 Sobic001G261549 Sobic009G188300--Sobic001G261549 Sobic001G440900 Sobic001G440900 Sobic009G188300--Sobic001G440900 Sobic009G102100 Sobic009G102100 Sobic009G188300--Sobic009G102100 Sobic006G013900 Sobic006G013900 Sobic009G188300--Sobic006G013900 Sobic009G188300--Sobic007G043600 Sobic009G165500 Sobic009G165500 Sobic009G188300--Sobic009G165500 Sobic010G001800 Sobic010G001800 Sobic009G188300--Sobic010G001800 Sobic006G102900 Sobic006G102900 Sobic009G188300--Sobic006G102900 Sobic006G278100 Sobic006G278100 Sobic009G188300--Sobic006G278100 Sobic007G152400 Sobic007G152400 Sobic009G124400--Sobic007G152400 Sobic009G124400--Sobic006G079900 Sobic009G124400--Sobic007G217400 Sobic009G124400--Sobic002G331300 Sobic009G124400--Sobic001G025600 Sobic009G120100 Sobic009G120100 Sobic009G124400--Sobic009G120100 Sobic009G124400--Sobic003G190800 Sobic004G204800 Sobic004G204800 Sobic009G124400--Sobic004G204800 Sobic009G124400--Sobic001G542900 Sobic004G012800 Sobic004G012800 Sobic004G137900--Sobic004G012800 Sobic006G231700 Sobic006G231700 Sobic004G137900--Sobic006G231700 Sobic003G358300 Sobic003G358300 Sobic004G137900--Sobic003G358300 Sobic004G137900--Sobic006G013900 Sobic004G137900--Sobic002G331300 Sobic001G286300 Sobic001G286300 Sobic004G137900--Sobic001G286300 Sobic004G137900--Sobic009G120100 Sobic003G129800 Sobic003G129800 Sobic004G137900--Sobic003G129800 Sobic005G111100 Sobic005G111100 Sobic004G137900--Sobic005G111100 Sobic001G434400 Sobic001G434400 Sobic006G276200--Sobic001G434400 Sobic001G544100 Sobic001G544100 Sobic006G276200--Sobic001G544100 Sobic010G088300 Sobic010G088300 Sobic006G276200--Sobic010G088300 Sobic002G279000 Sobic002G279000 Sobic006G276200--Sobic002G279000 Sobic004G242100 Sobic004G242100 Sobic006G276200--Sobic004G242100 Sobic001G136500 Sobic001G136500 Sobic006G276200--Sobic001G136500 Sobic006G276200--Sobic003G003000 Sobic001G199300 Sobic001G199300 Sobic006G276200--Sobic001G199300 Sobic006G276200--Sobic007G043600
Octagon: transcription factors


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