Gene annotation
Transcriptome id Sobic.003G003000.1
Synonym Sb03g000440
Functional annotation DNA-binding protein-related, putative, expressed
UniProt C5XJI8
Pfam -
Panther DB PTHR31472
NCBI CDD KOG3416; Predicted nucleic acid binding protein
KEGG Orthology K07466; RFA1, RPA1, replication factor A1
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT2G33845 : Nucleic acid-binding, OB-fold-like protein
RAP-DB (Rice) LOC_Os01g13700.1 : DNA-binding protein-related, putative, expressed
MaizeGDB (Corn) Zm00025a022786
Brachypodium KQK03500
Barley HORVU3Hr1G032420.1
Wheat TraesCS3A02G160600 , TraesCS3D02G167800 , TraesCS3B02G191200
Populus -


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cDNA sequences
Sobic.003G003000


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G129400 ribosomal protein-related, putative, expressed K02970: RP-S21, MRPS21, small subunit ribosomal protein S21
2 Sobic.001G132900 expressed protein -
3 Sobic.006G281200 csAtPR5, putative, expressed -
4 Sobic.010G018000 39S ribosomal protein L47, mitochondrial precursor, putative, expressed K17428: MRPL47, large subunit ribosomal protein L47
5 Sobic.001G008800 expressed protein -
6 Sobic.004G018400 peptidyl-prolyl cis-trans isomerase, putative, expressed K01802: peptidylprolyl isomerase
7 Sobic.002G117200 B4-BTB4 - Bric-a-Brac, Tramtrack, Broad Complex BTB domain with B4 subfamily conserved sequence, expressed -
8 Sobic.010G094800 pro-resilin precursor, putative, expressed -
9 Sobic.005G127100 expressed protein -
10 Sobic.007G043600 LSM domain containing protein, expressed K12621: U6 snRNA-associated Sm-like protein LSm2
11 Sobic.003G016400 SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@expressed protein -
12 Sobic.002G241500 tentative name(PubMedID : 31536532)@core histone H2A/H2B/H3/H4, putative, expressed -
13 Sobic.010G171501 - -
14 Sobic.003G325500 ICE-like protease p20 domain containing protein, putative, expressed -
15 Sobic.004G248900 50S ribosomal protein L17, putative, expressed K02879: RP-L17, MRPL17, large subunit ribosomal protein L17
16 Sobic.003G326900 expressed protein -
17 Sobic.009G168000 selT-like protein precursor, putative, expressed -
18 Sobic.004G150200 expressed protein -
19 Sobic.006G109700 UBA and UBX domain-containing protein, putative, expressed K14012: SHP1, UBX1, UBX domain-containing protein 1
20 Sobic.009G131100 transmembrane BAX inhibitor motif-containing protein, putative, expressed K06890: uncharacterized protein


Gene co-expression network
sample Sobic003G003000 Sobic003G003000 Sobic001G129400 Sobic001G129400 Sobic003G003000--Sobic001G129400 Sobic001G132900 Sobic001G132900 Sobic003G003000--Sobic001G132900 Sobic006G281200 Sobic006G281200 Sobic003G003000--Sobic006G281200 Sobic010G018000 Sobic010G018000 Sobic003G003000--Sobic010G018000 Sobic001G008800 Sobic001G008800 Sobic003G003000--Sobic001G008800 Sobic004G018400 Sobic004G018400 Sobic003G003000--Sobic004G018400 Sobic002G117200 Sobic002G117200 Sobic003G003000--Sobic002G117200 Sobic010G094800 Sobic010G094800 Sobic003G003000--Sobic010G094800 Sobic005G127100 Sobic005G127100 Sobic003G003000--Sobic005G127100 Sobic003G326900 Sobic003G326900 Sobic001G129400--Sobic003G326900 Sobic001G129400--Sobic003G003000 Sobic010G194200 Sobic010G194200 Sobic001G129400--Sobic010G194200 Sobic001G129400--Sobic001G008800 Sobic004G248900 Sobic004G248900 Sobic001G129400--Sobic004G248900 Sobic001G129400--Sobic010G018000 Sobic001G451901 Sobic001G451901 Sobic001G129400--Sobic001G451901 Sobic001G060300 Sobic001G060300 Sobic001G129400--Sobic001G060300 Sobic001G473400 Sobic001G473400 Sobic001G129400--Sobic001G473400 Sobic001G132900--Sobic003G003000 Sobic001G132900--Sobic001G008800 Sobic009G209100 Sobic009G209100 Sobic001G132900--Sobic009G209100 Sobic001G132900--Sobic001G129400 Sobic001G404100 Sobic001G404100 Sobic001G132900--Sobic001G404100 Sobic001G132900--Sobic010G018000 Sobic001G136500 Sobic001G136500 Sobic001G132900--Sobic001G136500 Sobic009G130400 Sobic009G130400 Sobic001G132900--Sobic009G130400 Sobic004G117800 Sobic004G117800 Sobic001G132900--Sobic004G117800 Sobic001G428100 Sobic001G428100 Sobic006G281200--Sobic001G428100 Sobic006G281200--Sobic003G003000 Sobic001G025600 Sobic001G025600 Sobic006G281200--Sobic001G025600 Sobic009G131100 Sobic009G131100 Sobic006G281200--Sobic009G131100 Sobic007G091000 Sobic007G091000 Sobic006G281200--Sobic007G091000 Sobic006G281200--Sobic001G404100 Sobic008G100000 Sobic008G100000 Sobic006G281200--Sobic008G100000 Sobic003G367900 Sobic003G367900 Sobic006G281200--Sobic003G367900 Sobic006G281200--Sobic009G130400 Sobic010G018000--Sobic003G326900 Sobic010G018000--Sobic001G129400 Sobic010G018000--Sobic003G003000 Sobic007G034400 Sobic007G034400 Sobic010G018000--Sobic007G034400 Sobic007G143000 Sobic007G143000 Sobic010G018000--Sobic007G143000 Sobic002G045100 Sobic002G045100 Sobic010G018000--Sobic002G045100 Sobic010G018000--Sobic003G367900 Sobic007G108100 Sobic007G108100 Sobic010G018000--Sobic007G108100 Sobic001G431700 Sobic001G431700 Sobic010G018000--Sobic001G431700 Sobic001G008800--Sobic001G129400 Sobic001G008800--Sobic003G326900 Sobic001G008800--Sobic001G132900 Sobic001G008800--Sobic003G003000 Sobic004G136500 Sobic004G136500 Sobic001G008800--Sobic004G136500 Sobic001G008800--Sobic004G117800 Sobic001G144600 Sobic001G144600 Sobic001G008800--Sobic001G144600 Sobic006G087400 Sobic006G087400 Sobic001G008800--Sobic006G087400 Sobic001G008800--Sobic001G451901 Sobic001G427700 Sobic001G427700 Sobic004G018400--Sobic001G427700 Sobic004G018400--Sobic003G003000 Sobic001G416300 Sobic001G416300 Sobic004G018400--Sobic001G416300 Sobic004G018400--Sobic010G094800 Sobic001G320700 Sobic001G320700 Sobic004G018400--Sobic001G320700 Sobic003G402200 Sobic003G402200 Sobic004G018400--Sobic003G402200 Sobic004G018400--Sobic002G117200 Sobic009G190800 Sobic009G190800 Sobic004G018400--Sobic009G190800 Sobic001G315800 Sobic001G315800 Sobic004G018400--Sobic001G315800 Sobic009G156300 Sobic009G156300 Sobic002G117200--Sobic009G156300 Sobic004G352900 Sobic004G352900 Sobic002G117200--Sobic004G352900 Sobic002G117200--Sobic003G003000 Sobic001G285000 Sobic001G285000 Sobic002G117200--Sobic001G285000 Sobic002G117200--Sobic009G131100 Sobic002G123200 Sobic002G123200 Sobic002G117200--Sobic002G123200 Sobic001G022600 Sobic001G022600 Sobic002G117200--Sobic001G022600 Sobic004G060600 Sobic004G060600 Sobic002G117200--Sobic004G060600 Sobic009G080200 Sobic009G080200 Sobic002G117200--Sobic009G080200 Sobic010G094800--Sobic003G003000 Sobic010G094800--Sobic004G018400 Sobic001G125900 Sobic001G125900 Sobic010G094800--Sobic001G125900 Sobic010G094800--Sobic006G281200 Sobic002G241500 Sobic002G241500 Sobic010G094800--Sobic002G241500 Sobic003G325500 Sobic003G325500 Sobic010G094800--Sobic003G325500 Sobic006G103900 Sobic006G103900 Sobic010G094800--Sobic006G103900 Sobic001G128100 Sobic001G128100 Sobic010G094800--Sobic001G128100 Sobic001G081400 Sobic001G081400 Sobic010G094800--Sobic001G081400 Sobic003G277000 Sobic003G277000 Sobic005G127100--Sobic003G277000 Sobic003G305100 Sobic003G305100 Sobic005G127100--Sobic003G305100 Sobic004G150200 Sobic004G150200 Sobic005G127100--Sobic004G150200 Sobic005G127100--Sobic003G003000 Sobic005G127100--Sobic001G025600 Sobic007G068000 Sobic007G068000 Sobic005G127100--Sobic007G068000 Sobic010G171501 Sobic010G171501 Sobic005G127100--Sobic010G171501 Sobic001G538600 Sobic001G538600 Sobic005G127100--Sobic001G538600 Sobic005G127100--Sobic007G091000
Octagon: transcription factors


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