Gene annotation
Transcriptome id Sobic.002G241500.1
Synonym Sb02g027870, Nuclear Factor Y, SbNF-YC4, HAP5C, NF-YC9
Functional annotation tentative name (PubMedID : 31536532)
core histone H2A/H2B/H3/H4, putative, expressed
UniProt C5X3S1
Pfam PF00808
Panther DB PTHR10252 PTHR10252:SF34
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT1G54830 : nuclear factor Y, subunit C3
RAP-DB (Rice) LOC_Os09g30310.1 : core histone H2A/H2B/H3/H4, putative, expressed
MaizeGDB (Corn) Zm00025a014174 , Zm00025a004990 , Zm00025a047395 , Zm00025a033737 , Zm00025a001598
Brachypodium KQJ98815 , KQK22549 , KQJ90692 , PNT77721 , PNT77720
Barley HORVU7Hr1G048760.4 , HORVU7Hr1G048760.5 , HORVU7Hr1G048760.6 , HORVU7Hr1G048760.2 , HORVU4Hr1G062890.1 , HORVU4Hr1G062890.3 , HORVU4Hr1G062890.2 , HORVU4Hr1G062890.5 , HORVU4Hr1G062890.4 , HORVU7Hr1G048760.3
Wheat -
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.006G281200 csAtPR5, putative, expressed -
2 Sobic.010G001800 DNA-binding protein-related, putative, expressed K07466: RFA1, RPA1, replication factor A1
3 Sobic.010G159100 DUF538 domain containing protein, putative, expressed -
4 Sobic.003G003000 DNA-binding protein-related, putative, expressed K07466: RFA1, RPA1, replication factor A1
5 Sobic.003G283300 expressed protein -
6 Sobic.002G361900 vesicle transport protein GOT1B, putative, expressed -
7 Sobic.006G181700 mitochondrial import inner membrane translocase subunit Tim17, putative, expressed K17794: mitochondrial import inner membrane translocase subunit TIM23
8 Sobic.008G127500 expressed protein -
9 Sobic.001G110300 fb27, putative, expressed -
10 Sobic.008G100000 40S ribosomal protein S9-2, putative, expressed K02997: RP-S9e, small subunit ribosomal protein S9e
11 Sobic.003G367900 LSM domain containing protein, expressed K12622: U6 snRNA-associated Sm-like protein LSm3
12 Sobic.004G325200 60S ribosome subunit biogenesis protein NIP7, putative, expressed K07565: 60S ribosome subunit biogenesis protein NIP7
13 Sobic.001G428100 S-RNase-binding protein, putative, expressed K19042: E3 ubiquitin-protein ligase BOI and related proteins
14 Sobic.004G113700 SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@Zinc finger C-x8-C-x5-C-x3-H type domain containing protein, expressed K13127: RNF113A, RING finger protein 113A
15 Sobic.010G065400 X0001, putative, expressed -
16 Sobic.001G132900 expressed protein -
17 Sobic.006G079900 COP9 signalosome complex subunit 8, putative, expressed K12181: COPS8, COP9 signalosome complex subunit 8
18 Sobic.001G530800 T-complex protein, putative, expressed K09496: T-complex protein 1 subunit delta
19 Sobic.009G171100 prenylated rab acceptor, putative, expressed -
20 Sobic.004G184000 SFT2, putative, expressed -


Gene co-expression network
sample Sobic002G241500 Sobic002G241500 Sobic006G281200 Sobic006G281200 Sobic002G241500--Sobic006G281200 Sobic010G001800 Sobic010G001800 Sobic002G241500--Sobic010G001800 Sobic010G159100 Sobic010G159100 Sobic002G241500--Sobic010G159100 Sobic003G003000 Sobic003G003000 Sobic002G241500--Sobic003G003000 Sobic003G283300 Sobic003G283300 Sobic002G241500--Sobic003G283300 Sobic002G361900 Sobic002G361900 Sobic002G241500--Sobic002G361900 Sobic006G181700 Sobic006G181700 Sobic002G241500--Sobic006G181700 Sobic008G127500 Sobic008G127500 Sobic002G241500--Sobic008G127500 Sobic001G110300 Sobic001G110300 Sobic002G241500--Sobic001G110300 Sobic001G428100 Sobic001G428100 Sobic006G281200--Sobic001G428100 Sobic006G281200--Sobic003G003000 Sobic001G025600 Sobic001G025600 Sobic006G281200--Sobic001G025600 Sobic009G131100 Sobic009G131100 Sobic006G281200--Sobic009G131100 Sobic007G091000 Sobic007G091000 Sobic006G281200--Sobic007G091000 Sobic001G404100 Sobic001G404100 Sobic006G281200--Sobic001G404100 Sobic008G100000 Sobic008G100000 Sobic006G281200--Sobic008G100000 Sobic003G367900 Sobic003G367900 Sobic006G281200--Sobic003G367900 Sobic009G130400 Sobic009G130400 Sobic006G281200--Sobic009G130400 Sobic001G440900 Sobic001G440900 Sobic010G001800--Sobic001G440900 Sobic007G108100 Sobic007G108100 Sobic010G001800--Sobic007G108100 Sobic010G001800--Sobic002G241500 Sobic010G001800--Sobic010G159100 Sobic001G505000 Sobic001G505000 Sobic010G001800--Sobic001G505000 Sobic008G008300 Sobic008G008300 Sobic010G001800--Sobic008G008300 Sobic008G093200 Sobic008G093200 Sobic010G001800--Sobic008G093200 Sobic001G108400 Sobic001G108400 Sobic010G001800--Sobic001G108400 Sobic009G001200 Sobic009G001200 Sobic010G001800--Sobic009G001200 Sobic010G159100--Sobic002G241500 Sobic010G159100--Sobic010G001800 Sobic002G247800 Sobic002G247800 Sobic010G159100--Sobic002G247800 Sobic004G285900 Sobic004G285900 Sobic010G159100--Sobic004G285900 Sobic001G389300 Sobic001G389300 Sobic010G159100--Sobic001G389300 Sobic010G159100--Sobic001G108400 Sobic007G225400 Sobic007G225400 Sobic010G159100--Sobic007G225400 Sobic007G214700 Sobic007G214700 Sobic010G159100--Sobic007G214700 Sobic002G179150 Sobic002G179150 Sobic010G159100--Sobic002G179150 Sobic001G129400 Sobic001G129400 Sobic003G003000--Sobic001G129400 Sobic001G132900 Sobic001G132900 Sobic003G003000--Sobic001G132900 Sobic003G003000--Sobic006G281200 Sobic010G018000 Sobic010G018000 Sobic003G003000--Sobic010G018000 Sobic001G008800 Sobic001G008800 Sobic003G003000--Sobic001G008800 Sobic004G018400 Sobic004G018400 Sobic003G003000--Sobic004G018400 Sobic002G117200 Sobic002G117200 Sobic003G003000--Sobic002G117200 Sobic010G094800 Sobic010G094800 Sobic003G003000--Sobic010G094800 Sobic005G127100 Sobic005G127100 Sobic003G003000--Sobic005G127100 Sobic001G451901 Sobic001G451901 Sobic003G283300--Sobic001G451901 Sobic003G283300--Sobic002G241500 Sobic003G283300--Sobic001G110300 Sobic010G197900 Sobic010G197900 Sobic003G283300--Sobic010G197900 Sobic004G113700 Sobic004G113700 Sobic003G283300--Sobic004G113700 Sobic007G217400 Sobic007G217400 Sobic003G283300--Sobic007G217400 Sobic006G231500 Sobic006G231500 Sobic003G283300--Sobic006G231500 Sobic009G001900 Sobic009G001900 Sobic003G283300--Sobic009G001900 Sobic003G283300--Sobic006G181700 Sobic002G361900--Sobic002G241500 Sobic003G305100 Sobic003G305100 Sobic002G361900--Sobic003G305100 Sobic001G031800 Sobic001G031800 Sobic002G361900--Sobic001G031800 Sobic009G024500 Sobic009G024500 Sobic002G361900--Sobic009G024500 Sobic009G077100 Sobic009G077100 Sobic002G361900--Sobic009G077100 Sobic002G361900--Sobic001G110300 Sobic002G131600 Sobic002G131600 Sobic002G361900--Sobic002G131600 Sobic002G263100 Sobic002G263100 Sobic002G361900--Sobic002G263100 Sobic007G023400 Sobic007G023400 Sobic002G361900--Sobic007G023400 Sobic004G018200 Sobic004G018200 Sobic006G181700--Sobic004G018200 Sobic009G232500 Sobic009G232500 Sobic006G181700--Sobic009G232500 Sobic006G181700--Sobic002G241500 Sobic006G181700--Sobic003G283300 Sobic006G181700--Sobic001G132900 Sobic006G181700--Sobic003G003000 Sobic003G016400 Sobic003G016400 Sobic006G181700--Sobic003G016400 Sobic010G194200 Sobic010G194200 Sobic006G181700--Sobic010G194200 Sobic001G188700 Sobic001G188700 Sobic006G181700--Sobic001G188700 Sobic010G018400 Sobic010G018400 Sobic008G127500--Sobic010G018400 Sobic010G054200 Sobic010G054200 Sobic008G127500--Sobic010G054200 Sobic001G304400 Sobic001G304400 Sobic008G127500--Sobic001G304400 Sobic007G177200 Sobic007G177200 Sobic008G127500--Sobic007G177200 Sobic010G065400 Sobic010G065400 Sobic008G127500--Sobic010G065400 Sobic003G129800 Sobic003G129800 Sobic008G127500--Sobic003G129800 Sobic003G368500 Sobic003G368500 Sobic008G127500--Sobic003G368500 Sobic001G058900 Sobic001G058900 Sobic008G127500--Sobic001G058900 Sobic001G172000 Sobic001G172000 Sobic008G127500--Sobic001G172000 Sobic004G106700 Sobic004G106700 Sobic001G110300--Sobic004G106700 Sobic001G110300--Sobic001G451901 Sobic001G110300--Sobic003G305100 Sobic004G184000 Sobic004G184000 Sobic001G110300--Sobic004G184000 Sobic005G110526 Sobic005G110526 Sobic001G110300--Sobic005G110526 Sobic001G110300--Sobic001G129400 Sobic001G110300--Sobic006G231500 Sobic006G237200 Sobic006G237200 Sobic001G110300--Sobic006G237200 Sobic002G260200 Sobic002G260200 Sobic001G110300--Sobic002G260200
Octagon: transcription factors


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