Gene annotation
Transcriptome id Sobic.002G361900.1
Synonym Sb02g038200, WPP1
Functional annotation vesicle transport protein GOT1B, putative, expressed
UniProt C5XD64
Pfam PF13943
Panther DB PTHR34362 PTHR34362:SF1
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT1G47200 : WPP domain protein 2
RAP-DB (Rice) LOC_Os07g40320.1 : vesicle transport protein GOT1B, putative, expressed
MaizeGDB (Corn) Zm00025a048630 , Zm00025a015089
Brachypodium KQK23000 , KQK15441
Barley HORVU2Hr1G034580.2 , HORVU2Hr1G034580.3 , HORVU2Hr1G034580.1 , HORVU4Hr1G069210.1
Wheat -
Populus -


JBrowse

Open New Page


cDNA sequences
Sobic.002G361900


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.002G241500 tentative name(PubMedID : 31536532)@core histone H2A/H2B/H3/H4, putative, expressed -
2 Sobic.003G305100 expressed protein -
3 Sobic.001G031800 ribosomal protein L30 containing protein, expressed K02907: RP-L30, MRPL30, large subunit ribosomal protein L30
4 Sobic.009G024500 50S ribosomal protein L10, chloroplast precursor, putative, expressed K02864: RP-L10, MRPL10, large subunit ribosomal protein L10
5 Sobic.009G077100 expressed protein -
6 Sobic.001G110300 fb27, putative, expressed -
7 Sobic.002G131600 expressed protein -
8 Sobic.002G263100 ferredoxin 1-like isoform 1, putative, expressed -
9 Sobic.007G023400 succinate dehydrogenase iron-sulfur subunit 2,mitochondrial precursor, putative, expressed K00235: SDHB, succinate dehydrogenase (ubiquinone) iron-sulfur subunit
10 Sobic.001G134200 expressed protein -
11 Sobic.004G260200 mitochondrial import inner membrane translocase subunit Tim17, putative, expressed -
12 Sobic.004G106700 WD domain, G-beta repeat domain containing protein, expressed K13341: PEX7, peroxin-7
13 Sobic.002G217500 WD domain, G-beta repeat domain containing protein, expressed K14004: protein transport protein SEC13
14 Sobic.001G473400 NADH dehydrogenase 1 alpha subcomplex subunit 13, putative, expressed K11353: NADH dehydrogenase (ubiquinone) 1 alpha subcomplex subunit 13
15 Sobic.001G286200 expressed protein K03966: NADH dehydrogenase (ubiquinone) 1 beta subcomplex subunit 10
16 Sobic.003G238500 -(PubMedID : 26976818)@lactate/malate dehydrogenase, putative, expressed K00026: malate dehydrogenase
17 Sobic.002G395000 bacterial transferase hexapeptide domain containing protein, expressed -
18 Sobic.004G150200 expressed protein -
19 Sobic.007G134000 14-3-3 protein, putative, expressed K06630: 14-3-3 protein epsilon
20 Sobic.003G322300 expressed protein -


Gene co-expression network
sample Sobic002G361900 Sobic002G361900 Sobic002G241500 Sobic002G241500 Sobic002G361900--Sobic002G241500 Sobic003G305100 Sobic003G305100 Sobic002G361900--Sobic003G305100 Sobic001G031800 Sobic001G031800 Sobic002G361900--Sobic001G031800 Sobic009G024500 Sobic009G024500 Sobic002G361900--Sobic009G024500 Sobic009G077100 Sobic009G077100 Sobic002G361900--Sobic009G077100 Sobic001G110300 Sobic001G110300 Sobic002G361900--Sobic001G110300 Sobic002G131600 Sobic002G131600 Sobic002G361900--Sobic002G131600 Sobic002G263100 Sobic002G263100 Sobic002G361900--Sobic002G263100 Sobic007G023400 Sobic007G023400 Sobic002G361900--Sobic007G023400 Sobic006G281200 Sobic006G281200 Sobic002G241500--Sobic006G281200 Sobic010G001800 Sobic010G001800 Sobic002G241500--Sobic010G001800 Sobic010G159100 Sobic010G159100 Sobic002G241500--Sobic010G159100 Sobic003G003000 Sobic003G003000 Sobic002G241500--Sobic003G003000 Sobic003G283300 Sobic003G283300 Sobic002G241500--Sobic003G283300 Sobic002G241500--Sobic002G361900 Sobic006G181700 Sobic006G181700 Sobic002G241500--Sobic006G181700 Sobic008G127500 Sobic008G127500 Sobic002G241500--Sobic008G127500 Sobic002G241500--Sobic001G110300 Sobic003G277000 Sobic003G277000 Sobic003G305100--Sobic003G277000 Sobic006G231500 Sobic006G231500 Sobic003G305100--Sobic006G231500 Sobic007G091000 Sobic007G091000 Sobic003G305100--Sobic007G091000 Sobic009G062000 Sobic009G062000 Sobic003G305100--Sobic009G062000 Sobic002G296200 Sobic002G296200 Sobic003G305100--Sobic002G296200 Sobic001G095632 Sobic001G095632 Sobic003G305100--Sobic001G095632 Sobic002G260200 Sobic002G260200 Sobic003G305100--Sobic002G260200 Sobic003G305100--Sobic009G024500 Sobic001G538600 Sobic001G538600 Sobic003G305100--Sobic001G538600 Sobic001G134200 Sobic001G134200 Sobic001G031800--Sobic001G134200 Sobic001G031800--Sobic002G263100 Sobic003G296800 Sobic003G296800 Sobic001G031800--Sobic003G296800 Sobic004G260200 Sobic004G260200 Sobic001G031800--Sobic004G260200 Sobic007G013900 Sobic007G013900 Sobic001G031800--Sobic007G013900 Sobic002G309700 Sobic002G309700 Sobic001G031800--Sobic002G309700 Sobic002G246800 Sobic002G246800 Sobic001G031800--Sobic002G246800 Sobic008G136800 Sobic008G136800 Sobic001G031800--Sobic008G136800 Sobic007G184001 Sobic007G184001 Sobic001G031800--Sobic007G184001 Sobic009G024500--Sobic002G263100 Sobic009G024500--Sobic001G031800 Sobic009G024500--Sobic003G296800 Sobic009G024500--Sobic003G305100 Sobic009G024500--Sobic004G260200 Sobic009G024500--Sobic009G077100 Sobic009G024500--Sobic002G309700 Sobic001G047800 Sobic001G047800 Sobic009G024500--Sobic001G047800 Sobic004G060500 Sobic004G060500 Sobic009G024500--Sobic004G060500 Sobic009G077100--Sobic001G031800 Sobic009G077100--Sobic009G024500 Sobic009G050000 Sobic009G050000 Sobic009G077100--Sobic009G050000 Sobic007G141100 Sobic007G141100 Sobic009G077100--Sobic007G141100 Sobic001G148700 Sobic001G148700 Sobic009G077100--Sobic001G148700 Sobic009G077100--Sobic002G246800 Sobic001G067601 Sobic001G067601 Sobic009G077100--Sobic001G067601 Sobic009G077100--Sobic003G305100 Sobic001G100400 Sobic001G100400 Sobic009G077100--Sobic001G100400 Sobic004G106700 Sobic004G106700 Sobic001G110300--Sobic004G106700 Sobic001G451901 Sobic001G451901 Sobic001G110300--Sobic001G451901 Sobic001G110300--Sobic003G305100 Sobic004G184000 Sobic004G184000 Sobic001G110300--Sobic004G184000 Sobic005G110526 Sobic005G110526 Sobic001G110300--Sobic005G110526 Sobic001G129400 Sobic001G129400 Sobic001G110300--Sobic001G129400 Sobic001G110300--Sobic006G231500 Sobic006G237200 Sobic006G237200 Sobic001G110300--Sobic006G237200 Sobic001G110300--Sobic002G260200 Sobic003G261100 Sobic003G261100 Sobic002G131600--Sobic003G261100 Sobic002G131600--Sobic002G296200 Sobic008G021100 Sobic008G021100 Sobic002G131600--Sobic008G021100 Sobic009G115700 Sobic009G115700 Sobic002G131600--Sobic009G115700 Sobic002G078300 Sobic002G078300 Sobic002G131600--Sobic002G078300 Sobic001G286200 Sobic001G286200 Sobic002G131600--Sobic001G286200 Sobic004G294900 Sobic004G294900 Sobic002G131600--Sobic004G294900 Sobic004G262300 Sobic004G262300 Sobic002G131600--Sobic004G262300 Sobic007G134900 Sobic007G134900 Sobic002G131600--Sobic007G134900 Sobic002G263100--Sobic007G134900 Sobic002G263100--Sobic001G047800 Sobic002G263100--Sobic002G309700 Sobic001G519000 Sobic001G519000 Sobic002G263100--Sobic001G519000 Sobic002G263100--Sobic004G260200 Sobic002G263100--Sobic003G296800 Sobic003G215700 Sobic003G215700 Sobic002G263100--Sobic003G215700 Sobic002G263100--Sobic001G286200 Sobic001G404800 Sobic001G404800 Sobic002G263100--Sobic001G404800 Sobic002G395000 Sobic002G395000 Sobic007G023400--Sobic002G395000 Sobic010G032600 Sobic010G032600 Sobic007G023400--Sobic010G032600 Sobic009G224400 Sobic009G224400 Sobic007G023400--Sobic009G224400 Sobic007G171500 Sobic007G171500 Sobic007G023400--Sobic007G171500 Sobic004G297700 Sobic004G297700 Sobic007G023400--Sobic004G297700 Sobic003G135600 Sobic003G135600 Sobic007G023400--Sobic003G135600 Sobic004G202100 Sobic004G202100 Sobic007G023400--Sobic004G202100 Sobic002G217500 Sobic002G217500 Sobic007G023400--Sobic002G217500 Sobic001G073600 Sobic001G073600 Sobic007G023400--Sobic001G073600
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.