Gene annotation
Transcriptome id Sobic.001G110300.1
Synonym Sb01g009840
Functional annotation fb27, putative, expressed
UniProt C5WMX6
Pfam PF01956
Panther DB PTHR20917
NCBI CDD KOG3312; Predicted membrane protein
KEGG Orthology -
Gene Ontology GO:0016020; membrane


Orthologs (automatic annotation)
TAIR AT5G06660 : Protein of unknown function DUF106, transmembrane
RAP-DB (Rice) LOC_Os03g51160.2 : fb27, putative, expressed
MaizeGDB (Corn) Zm00025a016925 , Zm00025a007939 , Zm00025a007937
Brachypodium PNT74221 , PNT74218 , PNT74219 , PNT74220
Barley HORVU4Hr1G008740.5 , HORVU4Hr1G008740.4 , HORVU4Hr1G008740.3 , HORVU4Hr1G008740.2
Wheat -
Populus -


JBrowse

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cDNA sequences
Sobic.001G110300


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.004G106700 WD domain, G-beta repeat domain containing protein, expressed K13341: PEX7, peroxin-7
2 Sobic.001G451901 - -
3 Sobic.003G305100 expressed protein -
4 Sobic.004G184000 SFT2, putative, expressed -
5 Sobic.005G110526 - -
6 Sobic.001G129400 ribosomal protein-related, putative, expressed K02970: RP-S21, MRPS21, small subunit ribosomal protein S21
7 Sobic.006G231500 acetyltransferase, GNAT family, putative, expressed K00670: NAA30, N-alpha-acetyltransferase 30
8 Sobic.006G237200 vacuolar ATP synthase subunit D 1, putative, expressed K02149: ATPeV1D, V-type H+-transporting ATPase subunit D
9 Sobic.002G260200 - -
10 Sobic.010G194200 expressed protein -
11 Sobic.003G283300 expressed protein -
12 Sobic.009G168000 selT-like protein precursor, putative, expressed -
13 Sobic.003G326900 expressed protein -
14 Sobic.001G060300 expressed protein -
15 Sobic.001G473400 NADH dehydrogenase 1 alpha subcomplex subunit 13, putative, expressed K11353: NADH dehydrogenase (ubiquinone) 1 alpha subcomplex subunit 13
16 Sobic.002G241500 tentative name(PubMedID : 31536532)@core histone H2A/H2B/H3/H4, putative, expressed -
17 Sobic.010G212200 synthase, putative, expressed K02377: TSTA3, GDP-L-fucose synthase
18 Sobic.004G202100 dehydrogenase, putative, expressed K00030: isocitrate dehydrogenase (NAD+)
19 Sobic.010G178800 solute carrier family 35 member B1, putative, expressed K15275: solute carrier family 35 (UDP-galactose transporter), member B1
20 Sobic.001G214900 expressed protein -


Gene co-expression network
sample Sobic001G110300 Sobic001G110300 Sobic004G106700 Sobic004G106700 Sobic001G110300--Sobic004G106700 Sobic001G451901 Sobic001G451901 Sobic001G110300--Sobic001G451901 Sobic003G305100 Sobic003G305100 Sobic001G110300--Sobic003G305100 Sobic004G184000 Sobic004G184000 Sobic001G110300--Sobic004G184000 Sobic005G110526 Sobic005G110526 Sobic001G110300--Sobic005G110526 Sobic001G129400 Sobic001G129400 Sobic001G110300--Sobic001G129400 Sobic006G231500 Sobic006G231500 Sobic001G110300--Sobic006G231500 Sobic006G237200 Sobic006G237200 Sobic001G110300--Sobic006G237200 Sobic002G260200 Sobic002G260200 Sobic001G110300--Sobic002G260200 Sobic004G106700--Sobic001G110300 Sobic004G106700--Sobic003G305100 Sobic001G060300 Sobic001G060300 Sobic004G106700--Sobic001G060300 Sobic004G106700--Sobic001G451901 Sobic004G106700--Sobic006G231500 Sobic010G194200 Sobic010G194200 Sobic004G106700--Sobic010G194200 Sobic004G106700--Sobic001G129400 Sobic004G244000 Sobic004G244000 Sobic004G106700--Sobic004G244000 Sobic009G024500 Sobic009G024500 Sobic004G106700--Sobic009G024500 Sobic001G451901--Sobic001G110300 Sobic001G451901--Sobic001G060300 Sobic001G451901--Sobic004G184000 Sobic001G451901--Sobic001G129400 Sobic003G283300 Sobic003G283300 Sobic001G451901--Sobic003G283300 Sobic001G451901--Sobic010G194200 Sobic004G262300 Sobic004G262300 Sobic001G451901--Sobic004G262300 Sobic004G025300 Sobic004G025300 Sobic001G451901--Sobic004G025300 Sobic003G217100 Sobic003G217100 Sobic001G451901--Sobic003G217100 Sobic003G277000 Sobic003G277000 Sobic003G305100--Sobic003G277000 Sobic003G305100--Sobic006G231500 Sobic007G091000 Sobic007G091000 Sobic003G305100--Sobic007G091000 Sobic009G062000 Sobic009G062000 Sobic003G305100--Sobic009G062000 Sobic002G296200 Sobic002G296200 Sobic003G305100--Sobic002G296200 Sobic001G095632 Sobic001G095632 Sobic003G305100--Sobic001G095632 Sobic003G305100--Sobic002G260200 Sobic003G305100--Sobic009G024500 Sobic001G538600 Sobic001G538600 Sobic003G305100--Sobic001G538600 Sobic007G165300 Sobic007G165300 Sobic004G184000--Sobic007G165300 Sobic005G129201 Sobic005G129201 Sobic004G184000--Sobic005G129201 Sobic003G326900 Sobic003G326900 Sobic004G184000--Sobic003G326900 Sobic010G258000 Sobic010G258000 Sobic004G184000--Sobic010G258000 Sobic004G184000--Sobic001G451901 Sobic003G348200 Sobic003G348200 Sobic004G184000--Sobic003G348200 Sobic007G217400 Sobic007G217400 Sobic004G184000--Sobic007G217400 Sobic004G184000--Sobic001G110300 Sobic001G116000 Sobic001G116000 Sobic004G184000--Sobic001G116000 Sobic001G188700 Sobic001G188700 Sobic005G110526--Sobic001G188700 Sobic005G110526--Sobic001G110300 Sobic001G434400 Sobic001G434400 Sobic005G110526--Sobic001G434400 Sobic008G107900 Sobic008G107900 Sobic005G110526--Sobic008G107900 Sobic005G110526--Sobic001G129400 Sobic005G110526--Sobic010G194200 Sobic003G248300 Sobic003G248300 Sobic005G110526--Sobic003G248300 Sobic004G356300 Sobic004G356300 Sobic005G110526--Sobic004G356300 Sobic005G110526--Sobic004G184000 Sobic001G129400--Sobic003G326900 Sobic003G003000 Sobic003G003000 Sobic001G129400--Sobic003G003000 Sobic001G129400--Sobic010G194200 Sobic001G008800 Sobic001G008800 Sobic001G129400--Sobic001G008800 Sobic004G248900 Sobic004G248900 Sobic001G129400--Sobic004G248900 Sobic010G018000 Sobic010G018000 Sobic001G129400--Sobic010G018000 Sobic001G129400--Sobic001G451901 Sobic001G129400--Sobic001G060300 Sobic001G473400 Sobic001G473400 Sobic001G129400--Sobic001G473400 Sobic006G231500--Sobic003G305100 Sobic009G212300 Sobic009G212300 Sobic006G231500--Sobic009G212300 Sobic009G001900 Sobic009G001900 Sobic006G231500--Sobic009G001900 Sobic004G202100 Sobic004G202100 Sobic006G231500--Sobic004G202100 Sobic004G012800 Sobic004G012800 Sobic006G231500--Sobic004G012800 Sobic006G109700 Sobic006G109700 Sobic006G231500--Sobic006G109700 Sobic006G231500--Sobic007G091000 Sobic006G231500--Sobic002G296200 Sobic001G286300 Sobic001G286300 Sobic006G231500--Sobic001G286300 Sobic002G410700 Sobic002G410700 Sobic006G237200--Sobic002G410700 Sobic009G256000 Sobic009G256000 Sobic006G237200--Sobic009G256000 Sobic008G021200 Sobic008G021200 Sobic006G237200--Sobic008G021200 Sobic007G161200 Sobic007G161200 Sobic006G237200--Sobic007G161200 Sobic003G216500 Sobic003G216500 Sobic006G237200--Sobic003G216500 Sobic002G186300 Sobic002G186300 Sobic006G237200--Sobic002G186300 Sobic006G020900 Sobic006G020900 Sobic006G237200--Sobic006G020900 Sobic005G018800 Sobic005G018800 Sobic006G237200--Sobic005G018800 Sobic006G237200--Sobic001G110300 Sobic007G013900 Sobic007G013900 Sobic002G260200--Sobic007G013900 Sobic006G013000 Sobic006G013000 Sobic002G260200--Sobic006G013000 Sobic001G031800 Sobic001G031800 Sobic002G260200--Sobic001G031800 Sobic004G159000 Sobic004G159000 Sobic002G260200--Sobic004G159000 Sobic002G260200--Sobic002G296200 Sobic002G262200 Sobic002G262200 Sobic002G260200--Sobic002G262200 Sobic002G260200--Sobic003G305100 Sobic002G260200--Sobic009G001900 Sobic004G260200 Sobic004G260200 Sobic002G260200--Sobic004G260200
Octagon: transcription factors


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