Gene annotation
Transcriptome id Sobic.002G045100.1
Synonym Sb02g003850, smB
Functional annotation LSM domain containing protein, expressed
UniProt A0A1B6Q970
Pfam PF01423
Panther DB PTHR10701
NCBI CDD KOG3168; U1 snRNP component
KEGG Orthology K11086; SNRPB, small nuclear ribonucleoprotein B and B'
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT5G44500 : Small nuclear ribonucleoprotein family protein
RAP-DB (Rice) LOC_Os07g07220.1 : LSM domain containing protein, expressed
MaizeGDB (Corn) Zm00025a016108 , Zm00025a045093
Brachypodium KQK20738
Barley HORVU2Hr1G056750.1 , HORVU2Hr1G056740.1
Wheat -
Populus -


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cDNA sequences
Sobic.002G045100


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.007G143000 ribosomal protein S17, putative, expressed K02961: RP-S17, MRPS17, small subunit ribosomal protein S17
2 Sobic.005G164700 h/ACA ribonucleoprotein complex subunit 1-like protein 1, putative, expressed K11128: GAR1, H/ACA ribonucleoprotein complex subunit 1
3 Sobic.009G012700 LSM domain containing protein, expressed K11096: SNRPD2, small nuclear ribonucleoprotein D2
4 Sobic.002G319200 expressed protein K11490: condensin-2 complex subunit H2
5 Sobic.003G160900 40S ribosomal protein S4, putative, expressed K02987: RP-S4e, small subunit ribosomal protein S4e
6 Sobic.007G034400 RNA recognition motif containing protein, putative, expressed -
7 Sobic.004G002350 - K11088: SNRPD3, small nuclear ribonucleoprotein D3
8 Sobic.010G018000 39S ribosomal protein L47, mitochondrial precursor, putative, expressed K17428: MRPL47, large subunit ribosomal protein L47
9 Sobic.001G371100 nucleolar protein 5A, putative, expressed K14564: nucleolar protein 56
10 Sobic.010G032700 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@methyltransferase domain containing protein, expressed K11434: type I protein arginine methyltransferase
11 Sobic.002G054000 ribosomal protein L4, putative, expressed K02930: RP-L4e, large subunit ribosomal protein L4e
12 Sobic.006G201500 L11 domain containing ribosomal protein, putative, expressed K02870: RP-L12e, large subunit ribosomal protein L12e
13 Sobic.001G096100 DNA-binding protein-related, putative, expressed K07466: RFA1, RPA1, replication factor A1
14 Sobic.008G135000 60S ribosomal protein L8, putative, expressed K02938: RP-L8e, large subunit ribosomal protein L8e
15 Sobic.001G058900 ribosomal protein S13p/S18e, putative, expressed K02964: RP-S18e, small subunit ribosomal protein S18e
16 Sobic.001G530800 T-complex protein, putative, expressed K09496: T-complex protein 1 subunit delta
17 Sobic.003G011100 reticulon domain containing protein, putative, expressed -
18 Sobic.008G129300 CPuORF5 - conserved peptide uORF-containing transcript, expressed -
19 Sobic.010G038700 expressed protein -
20 Sobic.006G052400 LSM domain containing protein, expressed K12625: U6 snRNA-associated Sm-like protein LSm6


Gene co-expression network
sample Sobic002G045100 Sobic002G045100 Sobic007G143000 Sobic007G143000 Sobic002G045100--Sobic007G143000 Sobic005G164700 Sobic005G164700 Sobic002G045100--Sobic005G164700 Sobic009G012700 Sobic009G012700 Sobic002G045100--Sobic009G012700 Sobic002G319200 Sobic002G319200 Sobic002G045100--Sobic002G319200 Sobic003G160900 Sobic003G160900 Sobic002G045100--Sobic003G160900 Sobic007G034400 Sobic007G034400 Sobic002G045100--Sobic007G034400 Sobic004G002350 Sobic004G002350 Sobic002G045100--Sobic004G002350 Sobic010G018000 Sobic010G018000 Sobic002G045100--Sobic010G018000 Sobic001G371100 Sobic001G371100 Sobic002G045100--Sobic001G371100 Sobic007G143000--Sobic002G045100 Sobic001G214900 Sobic001G214900 Sobic007G143000--Sobic001G214900 Sobic007G143000--Sobic003G160900 Sobic004G248900 Sobic004G248900 Sobic007G143000--Sobic004G248900 Sobic006G243400 Sobic006G243400 Sobic007G143000--Sobic006G243400 Sobic007G143000--Sobic010G018000 Sobic007G143000--Sobic007G034400 Sobic003G326900 Sobic003G326900 Sobic007G143000--Sobic003G326900 Sobic007G143000--Sobic005G164700 Sobic005G164700--Sobic007G034400 Sobic002G115000 Sobic002G115000 Sobic005G164700--Sobic002G115000 Sobic006G201500 Sobic006G201500 Sobic005G164700--Sobic006G201500 Sobic005G164700--Sobic002G045100 Sobic008G135000 Sobic008G135000 Sobic005G164700--Sobic008G135000 Sobic001G085400 Sobic001G085400 Sobic005G164700--Sobic001G085400 Sobic008G021100 Sobic008G021100 Sobic005G164700--Sobic008G021100 Sobic001G058900 Sobic001G058900 Sobic005G164700--Sobic001G058900 Sobic006G156000 Sobic006G156000 Sobic005G164700--Sobic006G156000 Sobic008G149450 Sobic008G149450 Sobic009G012700--Sobic008G149450 Sobic004G342400 Sobic004G342400 Sobic009G012700--Sobic004G342400 Sobic006G115000 Sobic006G115000 Sobic009G012700--Sobic006G115000 Sobic009G012700--Sobic002G045100 Sobic003G287300 Sobic003G287300 Sobic009G012700--Sobic003G287300 Sobic010G210000 Sobic010G210000 Sobic009G012700--Sobic010G210000 Sobic010G023900 Sobic010G023900 Sobic009G012700--Sobic010G023900 Sobic003G011100 Sobic003G011100 Sobic009G012700--Sobic003G011100 Sobic009G012700--Sobic004G002350 Sobic002G319200--Sobic002G045100 Sobic001G242800 Sobic001G242800 Sobic002G319200--Sobic001G242800 Sobic002G319200--Sobic001G371100 Sobic005G211200 Sobic005G211200 Sobic002G319200--Sobic005G211200 Sobic010G032700 Sobic010G032700 Sobic002G319200--Sobic010G032700 Sobic001G528600 Sobic001G528600 Sobic002G319200--Sobic001G528600 Sobic004G152200 Sobic004G152200 Sobic002G319200--Sobic004G152200 Sobic009G126500 Sobic009G126500 Sobic002G319200--Sobic009G126500 Sobic002G161700 Sobic002G161700 Sobic002G319200--Sobic002G161700 Sobic006G216600 Sobic006G216600 Sobic003G160900--Sobic006G216600 Sobic003G160900--Sobic003G287300 Sobic001G481700 Sobic001G481700 Sobic003G160900--Sobic001G481700 Sobic001G117400 Sobic001G117400 Sobic003G160900--Sobic001G117400 Sobic001G057300 Sobic001G057300 Sobic003G160900--Sobic001G057300 Sobic009G144300 Sobic009G144300 Sobic003G160900--Sobic009G144300 Sobic003G160900--Sobic004G002350 Sobic009G211700 Sobic009G211700 Sobic003G160900--Sobic009G211700 Sobic001G091900 Sobic001G091900 Sobic003G160900--Sobic001G091900 Sobic009G114400 Sobic009G114400 Sobic007G034400--Sobic009G114400 Sobic007G034400--Sobic005G164700 Sobic008G103900 Sobic008G103900 Sobic007G034400--Sobic008G103900 Sobic003G015400 Sobic003G015400 Sobic007G034400--Sobic003G015400 Sobic007G034400--Sobic001G058900 Sobic003G025200 Sobic003G025200 Sobic007G034400--Sobic003G025200 Sobic001G225700 Sobic001G225700 Sobic007G034400--Sobic001G225700 Sobic001G510800 Sobic001G510800 Sobic007G034400--Sobic001G510800 Sobic007G034400--Sobic002G045100 Sobic004G002350--Sobic003G025200 Sobic002G049300 Sobic002G049300 Sobic004G002350--Sobic002G049300 Sobic001G377800 Sobic001G377800 Sobic004G002350--Sobic001G377800 Sobic008G098800 Sobic008G098800 Sobic004G002350--Sobic008G098800 Sobic003G018600 Sobic003G018600 Sobic004G002350--Sobic003G018600 Sobic001G018800 Sobic001G018800 Sobic004G002350--Sobic001G018800 Sobic002G374900 Sobic002G374900 Sobic004G002350--Sobic002G374900 Sobic010G166100 Sobic010G166100 Sobic004G002350--Sobic010G166100 Sobic004G002350--Sobic006G115000 Sobic010G018000--Sobic003G326900 Sobic001G129400 Sobic001G129400 Sobic010G018000--Sobic001G129400 Sobic003G003000 Sobic003G003000 Sobic010G018000--Sobic003G003000 Sobic010G018000--Sobic007G034400 Sobic010G018000--Sobic007G143000 Sobic010G018000--Sobic002G045100 Sobic003G367900 Sobic003G367900 Sobic010G018000--Sobic003G367900 Sobic007G108100 Sobic007G108100 Sobic010G018000--Sobic007G108100 Sobic001G431700 Sobic001G431700 Sobic010G018000--Sobic001G431700 Sobic001G371100--Sobic010G032700 Sobic001G081900 Sobic001G081900 Sobic001G371100--Sobic001G081900 Sobic001G397000 Sobic001G397000 Sobic001G371100--Sobic001G397000 Sobic001G530800 Sobic001G530800 Sobic001G371100--Sobic001G530800 Sobic006G251600 Sobic006G251600 Sobic001G371100--Sobic006G251600 Sobic004G047200 Sobic004G047200 Sobic001G371100--Sobic004G047200 Sobic008G083400 Sobic008G083400 Sobic001G371100--Sobic008G083400 Sobic004G082700 Sobic004G082700 Sobic001G371100--Sobic004G082700 Sobic001G228200 Sobic001G228200 Sobic001G371100--Sobic001G228200
Octagon: transcription factors


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