Gene annotation
Transcriptome id Sobic.002G319200.1
Synonym Sb02g034770
Functional annotation expressed protein
UniProt C5XA17
Pfam PF06278 PF16869 PF16858
Panther DB PTHR14324 PTHR14324:SF3
NCBI CDD KOG2359; Uncharacterized conserved protein
KEGG Orthology K11490; condensin-2 complex subunit H2
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT3G16730 : -
RAP-DB (Rice) LOC_Os07g33360.1 : expressed protein
MaizeGDB (Corn) Zm00025a048227 , Zm00025a014798 , Zm00025a025766
Brachypodium KQK15986 , KQK15987
Barley -
Wheat TraesCS2B02G247200 , TraesCS2A02G221800 , TraesCS5B02G258000 , TraesCS2D02G227700
Populus -


JBrowse

Open New Page


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.002G045100 LSM domain containing protein, expressed K11086: SNRPB, small nuclear ribonucleoprotein B and B'
2 Sobic.001G242800 oxidoreductase, aldo/keto reductase family protein, putative, expressed -
3 Sobic.001G371100 nucleolar protein 5A, putative, expressed K14564: nucleolar protein 56
4 Sobic.005G211200 seed maturation protein PM27, putative, expressed -
5 Sobic.010G032700 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@methyltransferase domain containing protein, expressed K11434: type I protein arginine methyltransferase
6 Sobic.001G528600 remorin family protein, putative, expressed -
7 Sobic.004G152200 glycosyltransferase, putative, expressed -
8 Sobic.009G126500 methyltransferase, putative, expressed -
9 Sobic.002G161700 Myb-like DNA-binding domain containing protein, putative, expressed -
10 Sobic.004G336600 PCNA - Putative DNA replicative polymerase clamp, expressed K04802: proliferating cell nuclear antigen
11 Sobic.004G249300 proteasome subunit, putative, expressed K15030: translation initiation factor 3 subunit M
12 Sobic.004G047200 T-complex protein, putative, expressed K09499: T-complex protein 1 subunit eta
13 Sobic.004G215700 RAN GTPase-activating protein 1, putative, expressed K14319: Ran GTPase-activating protein 1
14 Sobic.004G326600 T-complex protein, putative, expressed K09493: CCT1, T-complex protein 1 subunit alpha
15 Sobic.009G119700 acetyltransferase, GNAT family, putative, expressed -
16 Sobic.009G211700 ZOS5-12 - C2H2 zinc finger protein, expressed -
17 Sobic.002G280700 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@WD domain, G-beta repeat domain containing protein, expressed K10752: RBBP4, HAT2, CAF1, histone-binding protein RBBP4
18 Sobic.001G112800 - -
19 Sobic.001G412500 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein K18732: SARNP, CIP29, SAP domain-containing ribonucleoprotein
20 Sobic.002G392800 thymidylate kinase, putative, expressed K00943: tmk, dTMP kinase


Gene co-expression network
sample Sobic002G319200 Sobic002G319200 Sobic002G045100 Sobic002G045100 Sobic002G319200--Sobic002G045100 Sobic001G242800 Sobic001G242800 Sobic002G319200--Sobic001G242800 Sobic001G371100 Sobic001G371100 Sobic002G319200--Sobic001G371100 Sobic005G211200 Sobic005G211200 Sobic002G319200--Sobic005G211200 Sobic010G032700 Sobic010G032700 Sobic002G319200--Sobic010G032700 Sobic001G528600 Sobic001G528600 Sobic002G319200--Sobic001G528600 Sobic004G152200 Sobic004G152200 Sobic002G319200--Sobic004G152200 Sobic009G126500 Sobic009G126500 Sobic002G319200--Sobic009G126500 Sobic002G161700 Sobic002G161700 Sobic002G319200--Sobic002G161700 Sobic007G143000 Sobic007G143000 Sobic002G045100--Sobic007G143000 Sobic005G164700 Sobic005G164700 Sobic002G045100--Sobic005G164700 Sobic009G012700 Sobic009G012700 Sobic002G045100--Sobic009G012700 Sobic002G045100--Sobic002G319200 Sobic003G160900 Sobic003G160900 Sobic002G045100--Sobic003G160900 Sobic007G034400 Sobic007G034400 Sobic002G045100--Sobic007G034400 Sobic004G002350 Sobic004G002350 Sobic002G045100--Sobic004G002350 Sobic010G018000 Sobic010G018000 Sobic002G045100--Sobic010G018000 Sobic002G045100--Sobic001G371100 Sobic002G392800 Sobic002G392800 Sobic001G242800--Sobic002G392800 Sobic001G242800--Sobic002G319200 Sobic001G242800--Sobic004G152200 Sobic008G004100 Sobic008G004100 Sobic001G242800--Sobic008G004100 Sobic001G112700 Sobic001G112700 Sobic001G242800--Sobic001G112700 Sobic001G242800--Sobic009G126500 Sobic001G432300 Sobic001G432300 Sobic001G242800--Sobic001G432300 Sobic009G151700 Sobic009G151700 Sobic001G242800--Sobic009G151700 Sobic006G177300 Sobic006G177300 Sobic001G242800--Sobic006G177300 Sobic001G371100--Sobic010G032700 Sobic001G081900 Sobic001G081900 Sobic001G371100--Sobic001G081900 Sobic001G397000 Sobic001G397000 Sobic001G371100--Sobic001G397000 Sobic001G530800 Sobic001G530800 Sobic001G371100--Sobic001G530800 Sobic006G251600 Sobic006G251600 Sobic001G371100--Sobic006G251600 Sobic004G047200 Sobic004G047200 Sobic001G371100--Sobic004G047200 Sobic008G083400 Sobic008G083400 Sobic001G371100--Sobic008G083400 Sobic004G082700 Sobic004G082700 Sobic001G371100--Sobic004G082700 Sobic001G228200 Sobic001G228200 Sobic001G371100--Sobic001G228200 Sobic005G211200--Sobic002G319200 Sobic009G165500 Sobic009G165500 Sobic005G211200--Sobic009G165500 Sobic001G040300 Sobic001G040300 Sobic005G211200--Sobic001G040300 Sobic006G052400 Sobic006G052400 Sobic005G211200--Sobic006G052400 Sobic001G505000 Sobic001G505000 Sobic005G211200--Sobic001G505000 Sobic008G135000 Sobic008G135000 Sobic005G211200--Sobic008G135000 Sobic008G058300 Sobic008G058300 Sobic005G211200--Sobic008G058300 Sobic005G211200--Sobic009G126500 Sobic010G224900 Sobic010G224900 Sobic005G211200--Sobic010G224900 Sobic010G032700--Sobic001G371100 Sobic009G119700 Sobic009G119700 Sobic010G032700--Sobic009G119700 Sobic002G280700 Sobic002G280700 Sobic010G032700--Sobic002G280700 Sobic009G088200 Sobic009G088200 Sobic010G032700--Sobic009G088200 Sobic004G343600 Sobic004G343600 Sobic010G032700--Sobic004G343600 Sobic002G054000 Sobic002G054000 Sobic010G032700--Sobic002G054000 Sobic010G032700--Sobic002G319200 Sobic010G032700--Sobic002G045100 Sobic010G032700--Sobic001G228200 Sobic001G078600 Sobic001G078600 Sobic001G528600--Sobic001G078600 Sobic001G107200 Sobic001G107200 Sobic001G528600--Sobic001G107200 Sobic001G528600--Sobic002G280700 Sobic001G528600--Sobic004G152200 Sobic006G191700 Sobic006G191700 Sobic001G528600--Sobic006G191700 Sobic010G274000 Sobic010G274000 Sobic001G528600--Sobic010G274000 Sobic004G331200 Sobic004G331200 Sobic001G528600--Sobic004G331200 Sobic005G047100 Sobic005G047100 Sobic001G528600--Sobic005G047100 Sobic006G102900 Sobic006G102900 Sobic001G528600--Sobic006G102900 Sobic004G152200--Sobic001G528600 Sobic004G152200--Sobic001G242800 Sobic002G393200 Sobic002G393200 Sobic004G152200--Sobic002G393200 Sobic004G152200--Sobic002G319200 Sobic007G113300 Sobic007G113300 Sobic004G152200--Sobic007G113300 Sobic002G034301 Sobic002G034301 Sobic004G152200--Sobic002G034301 Sobic004G286700 Sobic004G286700 Sobic004G152200--Sobic004G286700 Sobic009G206500 Sobic009G206500 Sobic004G152200--Sobic009G206500 Sobic004G119700 Sobic004G119700 Sobic004G152200--Sobic004G119700 Sobic009G126500--Sobic001G242800 Sobic009G126500--Sobic002G319200 Sobic002G309400 Sobic002G309400 Sobic009G126500--Sobic002G309400 Sobic009G238900 Sobic009G238900 Sobic009G126500--Sobic009G238900 Sobic009G126500--Sobic001G112700 Sobic009G126500--Sobic002G392800 Sobic010G218300 Sobic010G218300 Sobic009G126500--Sobic010G218300 Sobic009G126500--Sobic005G211200 Sobic007G183800 Sobic007G183800 Sobic009G126500--Sobic007G183800 Sobic002G161700--Sobic002G393200 Sobic002G161700--Sobic009G206500 Sobic004G308100 Sobic004G308100 Sobic002G161700--Sobic004G308100 Sobic007G166800 Sobic007G166800 Sobic002G161700--Sobic007G166800 Sobic002G161700--Sobic009G151700 Sobic009G061000 Sobic009G061000 Sobic002G161700--Sobic009G061000 Sobic003G013000 Sobic003G013000 Sobic002G161700--Sobic003G013000 Sobic002G161700--Sobic002G319200 Sobic006G254500 Sobic006G254500 Sobic002G161700--Sobic006G254500
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.