Gene annotation
Transcriptome id Sobic.009G126500.1,Sobic.009G126500.2,Sobic.009G126500.3,Sobic.009G126500.4
Synonym Sb09g019390
Functional annotation methyltransferase, putative, expressed
UniProt A0A1Z5R3B2 , A0A1B6P8E5 , A0A1Z5R329
Pfam PF08241
Panther DB PTHR12176 PTHR12176:SF14
NCBI CDD -
KEGG Orthology -
Gene Ontology GO:0008168; methyltransferase activity GO:0008152metabolic process


Orthologs (automatic annotation)
TAIR AT3G60910 : S-adenosyl-L-methionine-dependent methyltransferases superfamily protein
RAP-DB (Rice) LOC_Os05g32590.1 : methyltransferase, putative, expressed
MaizeGDB (Corn) Zm00025a043580
Brachypodium KQK06469 , KQK06468 , PNT71353 , KQK06474 , KQK06472 , KQK06473
Barley HORVU1Hr1G063010.35 , HORVU1Hr1G063010.34 , HORVU1Hr1G063010.37 , HORVU1Hr1G063010.36 , HORVU1Hr1G063010.31 , HORVU1Hr1G063010.30 , HORVU1Hr1G063010.33 , HORVU1Hr1G063010.32 , HORVU1Hr1G063010.39 , HORVU1Hr1G063010.38 , HORVU1Hr1G063010.28 , HORVU1Hr1G063010.29 , HORVU1Hr1G063010.22 , HORVU1Hr1G063010.23 , HORVU1Hr1G063010.20 , HORVU1Hr1G063010.21 , HORVU1Hr1G063010.26 , HORVU1Hr1G063010.27 , HORVU1Hr1G063010.24 , HORVU1Hr1G063010.25 , HORVU1Hr1G063010.12 , HORVU1Hr1G063010.17 , HORVU1Hr1G063010.45 , HORVU1Hr1G063010.46 , HORVU1Hr1G063010.47 , HORVU1Hr1G063010.40 , HORVU1Hr1G063010.41 , HORVU1Hr1G063010.42 , HORVU1Hr1G063010.43 , HORVU1Hr1G063010.3 , HORVU1Hr1G063010.2 , HORVU1Hr1G063010.1 , HORVU1Hr1G063010.7 , HORVU1Hr1G063010.6 , HORVU1Hr1G063010.5 , HORVU1Hr1G063010.4 , HORVU1Hr1G063010.9 , HORVU1Hr1G063010.8 , HORVU1Hr1G063010.13 , HORVU1Hr1G063010.11 , HORVU1Hr1G063010.10 , HORVU1Hr1G063010.16 , HORVU1Hr1G063010.15 , HORVU1Hr1G063010.14 , HORVU1Hr1G063010.19 , HORVU1Hr1G063010.18
Wheat TraesCS1B02G256500 , TraesCS1B02G256500 , TraesCS1D02G245200 , TraesCS1D02G245200 , TraesCS1A02G245500 , TraesCS1A02G245500 , TraesCS1A02G245500 , TraesCS1A02G245500
Populus -


JBrowse

Open New Page


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G242800 oxidoreductase, aldo/keto reductase family protein, putative, expressed -
2 Sobic.002G319200 expressed protein K11490: condensin-2 complex subunit H2
3 Sobic.002G309400 -(PubMedID : 26976818)@NAD-dependent malic enzyme, mitochondrial precursor, putative, expressed K00028: malate dehydrogenase (decarboxylating)
4 Sobic.009G238900 dehydrogenase, putative, expressed K00031: IDH1, IDH2, isocitrate dehydrogenase
5 Sobic.001G112700 class I glutamine amidotransferase, putative, expressed K01658: anthranilate synthase component II
6 Sobic.002G392800 thymidylate kinase, putative, expressed K00943: tmk, dTMP kinase
7 Sobic.010G218300 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@DNA binding protein, putative, expressed -
8 Sobic.005G211200 seed maturation protein PM27, putative, expressed -
9 Sobic.007G183800 ankyrin repeat-containing protein, putative, expressed -
10 Sobic.009G033000 expressed protein -
11 Sobic.009G182300 - -
12 Sobic.005G017300 SNF7 domain containing protein, putative, expressed K12194: CHMP4, SNF7, charged multivesicular body protein 4
13 Sobic.006G002700 OsRhmbd10 - Putative Rhomboid homologue, expressed -
14 Sobic.010G080500 SAM dependent carboxyl methyltransferase, putative, expressed -
15 Sobic.007G092100 ADP-ribosylation factor, putative, expressed K07942: ADP-ribosylation factor-like protein 1
16 Sobic.001G007600 GTPase-activating protein, putative, expressed K12493: ADP-ribosylation factor GTPase-activating protein 2/3
17 Sobic.001G096100 DNA-binding protein-related, putative, expressed K07466: RFA1, RPA1, replication factor A1
18 Sobic.007G044400 MSP domain containing protein, expressed -
19 Sobic.003G011100 reticulon domain containing protein, putative, expressed -
20 Sobic.008G129300 CPuORF5 - conserved peptide uORF-containing transcript, expressed -


Gene co-expression network
sample Sobic009G126500 Sobic009G126500 Sobic001G242800 Sobic001G242800 Sobic009G126500--Sobic001G242800 Sobic002G319200 Sobic002G319200 Sobic009G126500--Sobic002G319200 Sobic002G309400 Sobic002G309400 Sobic009G126500--Sobic002G309400 Sobic009G238900 Sobic009G238900 Sobic009G126500--Sobic009G238900 Sobic001G112700 Sobic001G112700 Sobic009G126500--Sobic001G112700 Sobic002G392800 Sobic002G392800 Sobic009G126500--Sobic002G392800 Sobic010G218300 Sobic010G218300 Sobic009G126500--Sobic010G218300 Sobic005G211200 Sobic005G211200 Sobic009G126500--Sobic005G211200 Sobic007G183800 Sobic007G183800 Sobic009G126500--Sobic007G183800 Sobic001G242800--Sobic002G392800 Sobic001G242800--Sobic002G319200 Sobic004G152200 Sobic004G152200 Sobic001G242800--Sobic004G152200 Sobic008G004100 Sobic008G004100 Sobic001G242800--Sobic008G004100 Sobic001G242800--Sobic001G112700 Sobic001G242800--Sobic009G126500 Sobic001G432300 Sobic001G432300 Sobic001G242800--Sobic001G432300 Sobic009G151700 Sobic009G151700 Sobic001G242800--Sobic009G151700 Sobic006G177300 Sobic006G177300 Sobic001G242800--Sobic006G177300 Sobic002G045100 Sobic002G045100 Sobic002G319200--Sobic002G045100 Sobic002G319200--Sobic001G242800 Sobic001G371100 Sobic001G371100 Sobic002G319200--Sobic001G371100 Sobic002G319200--Sobic005G211200 Sobic010G032700 Sobic010G032700 Sobic002G319200--Sobic010G032700 Sobic001G528600 Sobic001G528600 Sobic002G319200--Sobic001G528600 Sobic002G319200--Sobic004G152200 Sobic002G319200--Sobic009G126500 Sobic002G161700 Sobic002G161700 Sobic002G319200--Sobic002G161700 Sobic001G529000 Sobic001G529000 Sobic002G309400--Sobic001G529000 Sobic001G331900 Sobic001G331900 Sobic002G309400--Sobic001G331900 Sobic005G092800 Sobic005G092800 Sobic002G309400--Sobic005G092800 Sobic008G130400 Sobic008G130400 Sobic002G309400--Sobic008G130400 Sobic003G124800 Sobic003G124800 Sobic002G309400--Sobic003G124800 Sobic006G150600 Sobic006G150600 Sobic002G309400--Sobic006G150600 Sobic003G362400 Sobic003G362400 Sobic002G309400--Sobic003G362400 Sobic007G115100 Sobic007G115100 Sobic002G309400--Sobic007G115100 Sobic004G107600 Sobic004G107600 Sobic002G309400--Sobic004G107600 Sobic003G219800 Sobic003G219800 Sobic009G238900--Sobic003G219800 Sobic001G444800 Sobic001G444800 Sobic009G238900--Sobic001G444800 Sobic005G112800 Sobic005G112800 Sobic009G238900--Sobic005G112800 Sobic006G035900 Sobic006G035900 Sobic009G238900--Sobic006G035900 Sobic001G040100 Sobic001G040100 Sobic009G238900--Sobic001G040100 Sobic001G418100 Sobic001G418100 Sobic009G238900--Sobic001G418100 Sobic002G361700 Sobic002G361700 Sobic009G238900--Sobic002G361700 Sobic003G443300 Sobic003G443300 Sobic009G238900--Sobic003G443300 Sobic001G514200 Sobic001G514200 Sobic009G238900--Sobic001G514200 Sobic001G112700--Sobic002G392800 Sobic001G112700--Sobic001G242800 Sobic002G353000 Sobic002G353000 Sobic001G112700--Sobic002G353000 Sobic006G002700 Sobic006G002700 Sobic001G112700--Sobic006G002700 Sobic001G096100 Sobic001G096100 Sobic001G112700--Sobic001G096100 Sobic001G112700--Sobic002G309400 Sobic003G290000 Sobic003G290000 Sobic001G112700--Sobic003G290000 Sobic001G112700--Sobic009G126500 Sobic010G060600 Sobic010G060600 Sobic001G112700--Sobic010G060600 Sobic002G392800--Sobic001G242800 Sobic002G392800--Sobic001G112700 Sobic002G392800--Sobic008G004100 Sobic003G160900 Sobic003G160900 Sobic002G392800--Sobic003G160900 Sobic010G080500 Sobic010G080500 Sobic002G392800--Sobic010G080500 Sobic002G392800--Sobic006G002700 Sobic002G392800--Sobic009G238900 Sobic009G117000 Sobic009G117000 Sobic002G392800--Sobic009G117000 Sobic008G132700 Sobic008G132700 Sobic002G392800--Sobic008G132700 Sobic001G460400 Sobic001G460400 Sobic010G218300--Sobic001G460400 Sobic002G283900 Sobic002G283900 Sobic010G218300--Sobic002G283900 Sobic004G161900 Sobic004G161900 Sobic010G218300--Sobic004G161900 Sobic010G045400 Sobic010G045400 Sobic010G218300--Sobic010G045400 Sobic006G160900 Sobic006G160900 Sobic010G218300--Sobic006G160900 Sobic010G218300--Sobic009G238900 Sobic008G191400 Sobic008G191400 Sobic010G218300--Sobic008G191400 Sobic009G221500 Sobic009G221500 Sobic010G218300--Sobic009G221500 Sobic001G245800 Sobic001G245800 Sobic010G218300--Sobic001G245800 Sobic005G211200--Sobic002G319200 Sobic009G165500 Sobic009G165500 Sobic005G211200--Sobic009G165500 Sobic001G040300 Sobic001G040300 Sobic005G211200--Sobic001G040300 Sobic006G052400 Sobic006G052400 Sobic005G211200--Sobic006G052400 Sobic001G505000 Sobic001G505000 Sobic005G211200--Sobic001G505000 Sobic008G135000 Sobic008G135000 Sobic005G211200--Sobic008G135000 Sobic008G058300 Sobic008G058300 Sobic005G211200--Sobic008G058300 Sobic005G211200--Sobic009G126500 Sobic010G224900 Sobic010G224900 Sobic005G211200--Sobic010G224900 Sobic007G044400 Sobic007G044400 Sobic007G183800--Sobic007G044400 Sobic001G157800 Sobic001G157800 Sobic007G183800--Sobic001G157800 Sobic004G217450 Sobic004G217450 Sobic007G183800--Sobic004G217450 Sobic004G344500 Sobic004G344500 Sobic007G183800--Sobic004G344500 Sobic003G084300 Sobic003G084300 Sobic007G183800--Sobic003G084300 Sobic009G182300 Sobic009G182300 Sobic007G183800--Sobic009G182300 Sobic006G271300 Sobic006G271300 Sobic007G183800--Sobic006G271300 Sobic010G265900 Sobic010G265900 Sobic007G183800--Sobic010G265900 Sobic006G083000 Sobic006G083000 Sobic007G183800--Sobic006G083000
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.