Gene annotation
Transcriptome id Sobic.005G017300.1,Sobic.005G017300.3,Sobic.005G017300.2
Synonym SNF7.1, Sb05g001480
Functional annotation SNF7 domain containing protein, putative, expressed
UniProt C5Y3K9
Pfam PF03357
Panther DB PTHR22761 PTHR22761:SF8
NCBI CDD KOG1656; Protein involved in glucose derepression and pre-vacuolar endosome protein sorting
KEGG Orthology K12194; CHMP4, SNF7, charged multivesicular body protein 4
Gene Ontology GO:0007034; vacuolar transport


Orthologs (automatic annotation)
TAIR AT4G29160 : SNF7 family protein
RAP-DB (Rice) LOC_Os11g03060.2,LOC_Os11g03060.1 : SNF7 domain containing protein, putative, expressed
MaizeGDB (Corn) Zm00025a033333
Brachypodium PNT65543 , KQJ92502 , KQJ92503 , KQJ92504 , KQJ92505 , KQJ92506
Barley HORVU5Hr1G045960.6 , HORVU5Hr1G045960.5 , HORVU5Hr1G045960.4 , HORVU5Hr1G045960.3 , HORVU5Hr1G045960.2 , HORVU5Hr1G045960.1 , HORVU5Hr1G045960.9 , HORVU5Hr1G045960.8 , HORVU5Hr1G045960.10
Wheat TraesCS5B02G143300 , TraesCS5A02G144200 , TraesCS5D02G147800
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.004G138800 prefoldin subunit, putative, expressed K09548: prefoldin subunit 1
2 Sobic.009G182300 - -
3 Sobic.001G007600 GTPase-activating protein, putative, expressed K12493: ADP-ribosylation factor GTPase-activating protein 2/3
4 Sobic.001G096100 DNA-binding protein-related, putative, expressed K07466: RFA1, RPA1, replication factor A1
5 Sobic.002G309400 -(PubMedID : 26976818)@NAD-dependent malic enzyme, mitochondrial precursor, putative, expressed K00028: malate dehydrogenase (decarboxylating)
6 Sobic.002G060900 WD domain, G-beta repeat domain containing protein, expressed K14003: PREB, prolactin regulatory element-binding protein
7 Sobic.003G290000 6-phosphofructokinase, putative, expressed K00850: pfkA, 6-phosphofructokinase 1
8 Sobic.009G067000 DnaK family protein, putative, expressed K09489: heat shock 70kDa protein 4
9 Sobic.007G092100 ADP-ribosylation factor, putative, expressed K07942: ADP-ribosylation factor-like protein 1
10 Sobic.006G252200 MEE34, putative, expressed K03038: PSMD7, 26S proteasome regulatory subunit N8
11 Sobic.001G157800 26S protease regulatory subunit 6B, putative, expressed K03063: PSMC4, 26S proteasome regulatory subunit T3
12 Sobic.006G191100 tRNA-splicing endonuclease positive effector-related, putative, expressed K10706: SETX, senataxin
13 Sobic.001G512000 cyclin-dependent kinase inhibitor, putative, expressed -
14 Sobic.001G196100 src homology-3 domain protein 3, putative, expressed -
15 Sobic.001G294400 CAMK_CAMK_like.41 - CAMK includes calcium/calmodulin depedent protein kinases, expressed K14498: serine/threonine-protein kinase SRK2
16 Sobic.002G361700 expressed protein -
17 Sobic.001G237500 transporter family protein, putative, expressed -
18 Sobic.007G044400 MSP domain containing protein, expressed -
19 Sobic.009G126500 methyltransferase, putative, expressed -
20 Sobic.001G112700 class I glutamine amidotransferase, putative, expressed K01658: anthranilate synthase component II


Gene co-expression network
sample Sobic005G017300 Sobic005G017300 Sobic004G138800 Sobic004G138800 Sobic005G017300--Sobic004G138800 Sobic009G182300 Sobic009G182300 Sobic005G017300--Sobic009G182300 Sobic001G007600 Sobic001G007600 Sobic005G017300--Sobic001G007600 Sobic001G096100 Sobic001G096100 Sobic005G017300--Sobic001G096100 Sobic002G309400 Sobic002G309400 Sobic005G017300--Sobic002G309400 Sobic002G060900 Sobic002G060900 Sobic005G017300--Sobic002G060900 Sobic003G290000 Sobic003G290000 Sobic005G017300--Sobic003G290000 Sobic009G067000 Sobic009G067000 Sobic005G017300--Sobic009G067000 Sobic007G092100 Sobic007G092100 Sobic005G017300--Sobic007G092100 Sobic001G418900 Sobic001G418900 Sobic004G138800--Sobic001G418900 Sobic004G224900 Sobic004G224900 Sobic004G138800--Sobic004G224900 Sobic007G076300 Sobic007G076300 Sobic004G138800--Sobic007G076300 Sobic001G505500 Sobic001G505500 Sobic004G138800--Sobic001G505500 Sobic009G119900 Sobic009G119900 Sobic004G138800--Sobic009G119900 Sobic004G138800--Sobic001G096100 Sobic003G330500 Sobic003G330500 Sobic004G138800--Sobic003G330500 Sobic004G138800--Sobic001G007600 Sobic006G252200 Sobic006G252200 Sobic004G138800--Sobic006G252200 Sobic009G182300--Sobic001G007600 Sobic009G182300--Sobic004G138800 Sobic009G182300--Sobic001G505500 Sobic009G182300--Sobic001G418900 Sobic003G443300 Sobic003G443300 Sobic009G182300--Sobic003G443300 Sobic009G182300--Sobic005G017300 Sobic010G210000 Sobic010G210000 Sobic009G182300--Sobic010G210000 Sobic004G344500 Sobic004G344500 Sobic009G182300--Sobic004G344500 Sobic003G127700 Sobic003G127700 Sobic009G182300--Sobic003G127700 Sobic001G007600--Sobic004G138800 Sobic001G007600--Sobic009G067000 Sobic001G007600--Sobic001G418900 Sobic001G007600--Sobic003G443300 Sobic001G007600--Sobic001G505500 Sobic003G368500 Sobic003G368500 Sobic001G007600--Sobic003G368500 Sobic001G007600--Sobic006G252200 Sobic001G007600--Sobic009G182300 Sobic001G007600--Sobic007G076300 Sobic004G066800 Sobic004G066800 Sobic001G096100--Sobic004G066800 Sobic001G096100--Sobic004G138800 Sobic001G096100--Sobic003G330500 Sobic001G096100--Sobic006G252200 Sobic001G096100--Sobic004G224900 Sobic002G255100 Sobic002G255100 Sobic001G096100--Sobic002G255100 Sobic001G481700 Sobic001G481700 Sobic001G096100--Sobic001G481700 Sobic003G196800 Sobic003G196800 Sobic001G096100--Sobic003G196800 Sobic010G038700 Sobic010G038700 Sobic001G096100--Sobic010G038700 Sobic001G529000 Sobic001G529000 Sobic002G309400--Sobic001G529000 Sobic001G331900 Sobic001G331900 Sobic002G309400--Sobic001G331900 Sobic005G092800 Sobic005G092800 Sobic002G309400--Sobic005G092800 Sobic008G130400 Sobic008G130400 Sobic002G309400--Sobic008G130400 Sobic003G124800 Sobic003G124800 Sobic002G309400--Sobic003G124800 Sobic006G150600 Sobic006G150600 Sobic002G309400--Sobic006G150600 Sobic003G362400 Sobic003G362400 Sobic002G309400--Sobic003G362400 Sobic007G115100 Sobic007G115100 Sobic002G309400--Sobic007G115100 Sobic004G107600 Sobic004G107600 Sobic002G309400--Sobic004G107600 Sobic002G060900--Sobic006G150600 Sobic010G080500 Sobic010G080500 Sobic002G060900--Sobic010G080500 Sobic007G161400 Sobic007G161400 Sobic002G060900--Sobic007G161400 Sobic003G329800 Sobic003G329800 Sobic002G060900--Sobic003G329800 Sobic004G351500 Sobic004G351500 Sobic002G060900--Sobic004G351500 Sobic002G060900--Sobic004G224900 Sobic002G060900--Sobic002G309400 Sobic002G060900--Sobic005G017300 Sobic002G060900--Sobic006G252200 Sobic003G219800 Sobic003G219800 Sobic003G290000--Sobic003G219800 Sobic007G186100 Sobic007G186100 Sobic003G290000--Sobic007G186100 Sobic002G320800 Sobic002G320800 Sobic003G290000--Sobic002G320800 Sobic003G290000--Sobic003G443300 Sobic006G216600 Sobic006G216600 Sobic003G290000--Sobic006G216600 Sobic006G156000 Sobic006G156000 Sobic003G290000--Sobic006G156000 Sobic010G144900 Sobic010G144900 Sobic003G290000--Sobic010G144900 Sobic009G212400 Sobic009G212400 Sobic003G290000--Sobic009G212400 Sobic003G290000--Sobic001G007600 Sobic007G176200 Sobic007G176200 Sobic009G067000--Sobic007G176200 Sobic009G067000--Sobic006G252200 Sobic001G458700 Sobic001G458700 Sobic009G067000--Sobic001G458700 Sobic009G067000--Sobic001G007600 Sobic002G428200 Sobic002G428200 Sobic009G067000--Sobic002G428200 Sobic001G010700 Sobic001G010700 Sobic009G067000--Sobic001G010700 Sobic007G114200 Sobic007G114200 Sobic009G067000--Sobic007G114200 Sobic009G067000--Sobic004G224900 Sobic001G283200 Sobic001G283200 Sobic009G067000--Sobic001G283200 Sobic007G092100--Sobic004G066800 Sobic001G057300 Sobic001G057300 Sobic007G092100--Sobic001G057300 Sobic007G092100--Sobic001G505500 Sobic001G035400 Sobic001G035400 Sobic007G092100--Sobic001G035400 Sobic001G342200 Sobic001G342200 Sobic007G092100--Sobic001G342200 Sobic007G092100--Sobic003G330500 Sobic007G092100--Sobic001G096100 Sobic007G092100--Sobic004G138800 Sobic009G191200 Sobic009G191200 Sobic007G092100--Sobic009G191200
Octagon: transcription factors


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