Gene annotation
Transcriptome id Sobic.002G060900.1
Synonym Sb02g005080, PHF1
Functional annotation WD domain, G-beta repeat domain containing protein, expressed
UniProt C5XBT2
Pfam -
Panther DB PTHR23284 PTHR23284:SF2
NCBI CDD KOG0771; Prolactin regulatory element-binding protein/Protein transport protein SEC12p
KEGG Orthology K14003; PREB, prolactin regulatory element-binding protein
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT3G52190 : phosphate transporter traffic facilitator1
RAP-DB (Rice) LOC_Os07g09000.1 : WD domain, G-beta repeat domain containing protein, expressed
MaizeGDB (Corn) Zm00025a045262
Brachypodium KQK12658 , KQK20513
Barley HORVU7Hr1G103510.9 , HORVU7Hr1G103510.5 , HORVU7Hr1G103510.4 , HORVU7Hr1G103510.7 , HORVU7Hr1G103510.6 , HORVU7Hr1G103510.3 , HORVU7Hr1G103510.2 , HORVU7Hr1G103510.11 , HORVU7Hr1G103510.10 , HORVU7Hr1G103510.13 , HORVU7Hr1G103510.12 , HORVU5Hr1G106990.4 , HORVU5Hr1G106990.5 , HORVU5Hr1G106990.2 , HORVU5Hr1G106990.3 , HORVU7Hr1G103510.1
Wheat TraesCS5A02G446800 , TraesCS5B02G450700 , TraesCS7D02G443200 , TraesCS7B02G354500 , TraesCS7A02G454100 , TraesCS7A02G454100 , TraesCS5D02G453600 , TraesCS5D02G453600
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.006G150600 hydrolase, putative, expressed K14664: IAA-amino acid hydrolase
2 Sobic.010G080500 SAM dependent carboxyl methyltransferase, putative, expressed -
3 Sobic.007G161400 Mpv17 / PMP22 family domain containing protein, expressed K13347: PXMP2, peroxisomal membrane protein 2
K13348: protein Mpv17
4 Sobic.003G329800 BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1 precursor, putative, expressed -
5 Sobic.004G351500 - -
6 Sobic.004G224900 peptidase, T1 family, putative, expressed K02726: 20S proteasome subunit alpha 2
7 Sobic.002G309400 -(PubMedID : 26976818)@NAD-dependent malic enzyme, mitochondrial precursor, putative, expressed K00028: malate dehydrogenase (decarboxylating)
8 Sobic.005G017300 SNF7 domain containing protein, putative, expressed K12194: CHMP4, SNF7, charged multivesicular body protein 4
9 Sobic.006G252200 MEE34, putative, expressed K03038: PSMD7, 26S proteasome regulatory subunit N8
10 Sobic.001G502200 peptidase, T1 family, putative, expressed K02729: 20S proteasome subunit alpha 5
11 Sobic.003G124800 26S proteasome non-ATPase regulatory subunit 14, putative, expressed K03030: PSMD14, RPN11, 26S proteasome regulatory subunit N11
12 Sobic.007G078100 UPF0041 domain containing protein, putative, expressed -
13 Sobic.003G330500 peptidase, T1 family, putative, expressed -
14 Sobic.001G315500 ethylene-responsive element-binding protein, putative, expressed -
15 Sobic.004G001000 transmembrane amino acid transporter protein, putative, expressed K15015: SLC32A, solute carrier family 32 (vesicular inhibitory amino acid transporter)
16 Sobic.001G059100 glutamate dehydrogenase protein, putative, expressed K00261: GLUD1_2, glutamate dehydrogenase (NAD(P)+)
17 Sobic.009G088100 helix-loop-helix DNA-binding domain containing protein, expressed -
18 Sobic.007G030700 transporter, putative, expressed -
19 Sobic.001G236300 cell division control protein 48 homolog E, putative, expressed K13525: VCP, transitional endoplasmic reticulum ATPase
20 Sobic.003G261500 lipase, putative, expressed -


Gene co-expression network
sample Sobic002G060900 Sobic002G060900 Sobic006G150600 Sobic006G150600 Sobic002G060900--Sobic006G150600 Sobic010G080500 Sobic010G080500 Sobic002G060900--Sobic010G080500 Sobic007G161400 Sobic007G161400 Sobic002G060900--Sobic007G161400 Sobic003G329800 Sobic003G329800 Sobic002G060900--Sobic003G329800 Sobic004G351500 Sobic004G351500 Sobic002G060900--Sobic004G351500 Sobic004G224900 Sobic004G224900 Sobic002G060900--Sobic004G224900 Sobic002G309400 Sobic002G309400 Sobic002G060900--Sobic002G309400 Sobic005G017300 Sobic005G017300 Sobic002G060900--Sobic005G017300 Sobic006G252200 Sobic006G252200 Sobic002G060900--Sobic006G252200 Sobic003G124800 Sobic003G124800 Sobic006G150600--Sobic003G124800 Sobic001G294000 Sobic001G294000 Sobic006G150600--Sobic001G294000 Sobic007G030700 Sobic007G030700 Sobic006G150600--Sobic007G030700 Sobic001G529000 Sobic001G529000 Sobic006G150600--Sobic001G529000 Sobic009G198500 Sobic009G198500 Sobic006G150600--Sobic009G198500 Sobic006G150600--Sobic003G329800 Sobic008G058300 Sobic008G058300 Sobic006G150600--Sobic008G058300 Sobic003G362400 Sobic003G362400 Sobic006G150600--Sobic003G362400 Sobic008G132800 Sobic008G132800 Sobic006G150600--Sobic008G132800 Sobic003G018600 Sobic003G018600 Sobic010G080500--Sobic003G018600 Sobic001G377800 Sobic001G377800 Sobic010G080500--Sobic001G377800 Sobic009G088100 Sobic009G088100 Sobic010G080500--Sobic009G088100 Sobic001G505500 Sobic001G505500 Sobic010G080500--Sobic001G505500 Sobic002G406500 Sobic002G406500 Sobic010G080500--Sobic002G406500 Sobic008G132700 Sobic008G132700 Sobic010G080500--Sobic008G132700 Sobic001G418900 Sobic001G418900 Sobic010G080500--Sobic001G418900 Sobic007G009100 Sobic007G009100 Sobic010G080500--Sobic007G009100 Sobic002G392800 Sobic002G392800 Sobic010G080500--Sobic002G392800 Sobic003G280400 Sobic003G280400 Sobic007G161400--Sobic003G280400 Sobic008G128900 Sobic008G128900 Sobic007G161400--Sobic008G128900 Sobic006G059700 Sobic006G059700 Sobic007G161400--Sobic006G059700 Sobic004G042000 Sobic004G042000 Sobic007G161400--Sobic004G042000 Sobic005G043000 Sobic005G043000 Sobic007G161400--Sobic005G043000 Sobic007G078100 Sobic007G078100 Sobic007G161400--Sobic007G078100 Sobic002G312900 Sobic002G312900 Sobic007G161400--Sobic002G312900 Sobic003G363800 Sobic003G363800 Sobic007G161400--Sobic003G363800 Sobic004G051700 Sobic004G051700 Sobic007G161400--Sobic004G051700 Sobic001G483100 Sobic001G483100 Sobic003G329800--Sobic001G483100 Sobic004G066800 Sobic004G066800 Sobic003G329800--Sobic004G066800 Sobic001G502200 Sobic001G502200 Sobic003G329800--Sobic001G502200 Sobic002G263800 Sobic002G263800 Sobic003G329800--Sobic002G263800 Sobic004G310300 Sobic004G310300 Sobic003G329800--Sobic004G310300 Sobic008G161800 Sobic008G161800 Sobic003G329800--Sobic008G161800 Sobic003G329800--Sobic008G132800 Sobic003G329800--Sobic003G018600 Sobic003G329800--Sobic006G150600 Sobic001G364500 Sobic001G364500 Sobic004G351500--Sobic001G364500 Sobic001G087900 Sobic001G087900 Sobic004G351500--Sobic001G087900 Sobic002G155500 Sobic002G155500 Sobic004G351500--Sobic002G155500 Sobic001G034700 Sobic001G034700 Sobic004G351500--Sobic001G034700 Sobic009G062000 Sobic009G062000 Sobic004G351500--Sobic009G062000 Sobic004G225500 Sobic004G225500 Sobic004G351500--Sobic004G225500 Sobic001G536500 Sobic001G536500 Sobic004G351500--Sobic001G536500 Sobic002G078400 Sobic002G078400 Sobic004G351500--Sobic002G078400 Sobic008G129400 Sobic008G129400 Sobic004G351500--Sobic008G129400 Sobic003G330500 Sobic003G330500 Sobic004G224900--Sobic003G330500 Sobic004G224900--Sobic006G252200 Sobic007G176200 Sobic007G176200 Sobic004G224900--Sobic007G176200 Sobic004G138800 Sobic004G138800 Sobic004G224900--Sobic004G138800 Sobic007G076300 Sobic007G076300 Sobic004G224900--Sobic007G076300 Sobic001G481700 Sobic001G481700 Sobic004G224900--Sobic001G481700 Sobic004G224900--Sobic001G502200 Sobic001G458700 Sobic001G458700 Sobic004G224900--Sobic001G458700 Sobic001G236300 Sobic001G236300 Sobic004G224900--Sobic001G236300 Sobic002G309400--Sobic001G529000 Sobic001G331900 Sobic001G331900 Sobic002G309400--Sobic001G331900 Sobic005G092800 Sobic005G092800 Sobic002G309400--Sobic005G092800 Sobic008G130400 Sobic008G130400 Sobic002G309400--Sobic008G130400 Sobic002G309400--Sobic003G124800 Sobic002G309400--Sobic006G150600 Sobic002G309400--Sobic003G362400 Sobic007G115100 Sobic007G115100 Sobic002G309400--Sobic007G115100 Sobic004G107600 Sobic004G107600 Sobic002G309400--Sobic004G107600 Sobic005G017300--Sobic004G138800 Sobic009G182300 Sobic009G182300 Sobic005G017300--Sobic009G182300 Sobic001G007600 Sobic001G007600 Sobic005G017300--Sobic001G007600 Sobic001G096100 Sobic001G096100 Sobic005G017300--Sobic001G096100 Sobic005G017300--Sobic002G309400 Sobic005G017300--Sobic002G060900 Sobic003G290000 Sobic003G290000 Sobic005G017300--Sobic003G290000 Sobic009G067000 Sobic009G067000 Sobic005G017300--Sobic009G067000 Sobic007G092100 Sobic007G092100 Sobic005G017300--Sobic007G092100 Sobic006G252200--Sobic007G176200 Sobic006G252200--Sobic001G458700 Sobic006G252200--Sobic004G224900 Sobic001G010700 Sobic001G010700 Sobic006G252200--Sobic001G010700 Sobic006G252200--Sobic003G330500 Sobic002G428200 Sobic002G428200 Sobic006G252200--Sobic002G428200 Sobic006G252200--Sobic004G138800 Sobic001G283200 Sobic001G283200 Sobic006G252200--Sobic001G283200 Sobic006G252200--Sobic001G096100
Octagon: transcription factors


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