Gene annotation
Transcriptome id Sobic.005G164700.1
Synonym Sb05g022540
Functional annotation h/ACA ribonucleoprotein complex subunit 1-like protein 1, putative, expressed
UniProt C5Y4Z6
Pfam PF04410
Panther DB PTHR23237
NCBI CDD -
KEGG Orthology K11128; GAR1, H/ACA ribonucleoprotein complex subunit 1
Gene Ontology GO:0001522; pseudouridine synthesis


Orthologs (automatic annotation)
TAIR AT3G03920 : H/ACA ribonucleoprotein complex, subunit Gar1/Naf1 protein
RAP-DB (Rice) LOC_Os11g37080.1 : h/ACA ribonucleoprotein complex subunit 1-like protein 1, putative, expressed
MaizeGDB (Corn) Zm00025a015796 , Zm00025a033893 , Zm00025a045717
Brachypodium KQJ88099
Barley -
Wheat TraesCS3A02G321500 , TraesCS3D02G309800 , TraesCS4D02G152400 , TraesCS4D02G152400 , TraesCS4A02G154000 , TraesCS3B02G343500
Populus -


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cDNA sequences
Sobic.005G164700


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.007G034400 RNA recognition motif containing protein, putative, expressed -
2 Sobic.002G115000 60S ribosomal protein L8, putative, expressed K02938: RP-L8e, large subunit ribosomal protein L8e
3 Sobic.006G201500 L11 domain containing ribosomal protein, putative, expressed K02870: RP-L12e, large subunit ribosomal protein L12e
4 Sobic.002G045100 LSM domain containing protein, expressed K11086: SNRPB, small nuclear ribonucleoprotein B and B'
5 Sobic.008G135000 60S ribosomal protein L8, putative, expressed K02938: RP-L8e, large subunit ribosomal protein L8e
6 Sobic.001G085400 ribosomal protein L13, putative, expressed K02872: RP-L13Ae, large subunit ribosomal protein L13Ae
7 Sobic.008G021100 ribosomal protein, putative, expressed K02960: RP-S16e, small subunit ribosomal protein S16e
8 Sobic.001G058900 ribosomal protein S13p/S18e, putative, expressed K02964: RP-S18e, small subunit ribosomal protein S18e
9 Sobic.006G156000 ferredoxin-thioredoxin reductase, variable chain, putative, expressed -
10 Sobic.009G114400 expressed protein K14839: nucleolar protein 16
11 Sobic.006G216600 ribosomal protein L3, putative, expressed K02925: RP-L3e, large subunit ribosomal protein L3e
12 Sobic.001G057300 ribosomal protein L4, putative, expressed K02930: RP-L4e, large subunit ribosomal protein L4e
13 Sobic.003G025200 ribosomal protein L5, putative, expressed K02868: RP-L11e, large subunit ribosomal protein L11e
14 Sobic.004G322200 60S ribosomal protein L35a-3, putative, expressed K02917: RP-L35Ae, large subunit ribosomal protein L35Ae
15 Sobic.006G035900 ribosomal protein, putative, expressed K02995: RP-S8e, small subunit ribosomal protein S8e
16 Sobic.010G166100 40S ribosomal protein S24, putative, expressed K02974: RP-S24e, small subunit ribosomal protein S24e
17 Sobic.009G117000 expressed protein -
18 Sobic.002G280700 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@WD domain, G-beta repeat domain containing protein, expressed K10752: RBBP4, HAT2, CAF1, histone-binding protein RBBP4
19 Sobic.003G011100 reticulon domain containing protein, putative, expressed -
20 Sobic.003G160900 40S ribosomal protein S4, putative, expressed K02987: RP-S4e, small subunit ribosomal protein S4e


Gene co-expression network
sample Sobic005G164700 Sobic005G164700 Sobic007G034400 Sobic007G034400 Sobic005G164700--Sobic007G034400 Sobic002G115000 Sobic002G115000 Sobic005G164700--Sobic002G115000 Sobic006G201500 Sobic006G201500 Sobic005G164700--Sobic006G201500 Sobic002G045100 Sobic002G045100 Sobic005G164700--Sobic002G045100 Sobic008G135000 Sobic008G135000 Sobic005G164700--Sobic008G135000 Sobic001G085400 Sobic001G085400 Sobic005G164700--Sobic001G085400 Sobic008G021100 Sobic008G021100 Sobic005G164700--Sobic008G021100 Sobic001G058900 Sobic001G058900 Sobic005G164700--Sobic001G058900 Sobic006G156000 Sobic006G156000 Sobic005G164700--Sobic006G156000 Sobic009G114400 Sobic009G114400 Sobic007G034400--Sobic009G114400 Sobic007G034400--Sobic005G164700 Sobic008G103900 Sobic008G103900 Sobic007G034400--Sobic008G103900 Sobic003G015400 Sobic003G015400 Sobic007G034400--Sobic003G015400 Sobic007G034400--Sobic001G058900 Sobic003G025200 Sobic003G025200 Sobic007G034400--Sobic003G025200 Sobic001G225700 Sobic001G225700 Sobic007G034400--Sobic001G225700 Sobic001G510800 Sobic001G510800 Sobic007G034400--Sobic001G510800 Sobic007G034400--Sobic002G045100 Sobic002G115000--Sobic001G085400 Sobic007G019000 Sobic007G019000 Sobic002G115000--Sobic007G019000 Sobic002G115000--Sobic001G058900 Sobic002G304900 Sobic002G304900 Sobic002G115000--Sobic002G304900 Sobic002G047600 Sobic002G047600 Sobic002G115000--Sobic002G047600 Sobic003G249700 Sobic003G249700 Sobic002G115000--Sobic003G249700 Sobic002G115000--Sobic006G201500 Sobic007G178600 Sobic007G178600 Sobic002G115000--Sobic007G178600 Sobic002G049300 Sobic002G049300 Sobic002G115000--Sobic002G049300 Sobic006G201500--Sobic002G115000 Sobic006G201500--Sobic001G085400 Sobic009G233400 Sobic009G233400 Sobic006G201500--Sobic009G233400 Sobic010G166100 Sobic010G166100 Sobic006G201500--Sobic010G166100 Sobic006G201500--Sobic007G019000 Sobic010G069400 Sobic010G069400 Sobic006G201500--Sobic010G069400 Sobic006G201500--Sobic001G058900 Sobic008G098800 Sobic008G098800 Sobic006G201500--Sobic008G098800 Sobic006G201500--Sobic003G249700 Sobic007G143000 Sobic007G143000 Sobic002G045100--Sobic007G143000 Sobic002G045100--Sobic005G164700 Sobic009G012700 Sobic009G012700 Sobic002G045100--Sobic009G012700 Sobic002G319200 Sobic002G319200 Sobic002G045100--Sobic002G319200 Sobic003G160900 Sobic003G160900 Sobic002G045100--Sobic003G160900 Sobic002G045100--Sobic007G034400 Sobic004G002350 Sobic004G002350 Sobic002G045100--Sobic004G002350 Sobic010G018000 Sobic010G018000 Sobic002G045100--Sobic010G018000 Sobic001G371100 Sobic001G371100 Sobic002G045100--Sobic001G371100 Sobic008G135000--Sobic001G058900 Sobic008G135000--Sobic009G233400 Sobic008G135000--Sobic002G304900 Sobic008G135000--Sobic002G115000 Sobic001G057300 Sobic001G057300 Sobic008G135000--Sobic001G057300 Sobic009G191200 Sobic009G191200 Sobic008G135000--Sobic009G191200 Sobic001G334300 Sobic001G334300 Sobic008G135000--Sobic001G334300 Sobic008G135000--Sobic001G085400 Sobic008G135000--Sobic010G069400 Sobic001G085400--Sobic002G115000 Sobic001G085400--Sobic002G304900 Sobic001G085400--Sobic002G049300 Sobic001G085400--Sobic002G047600 Sobic006G216600 Sobic006G216600 Sobic001G085400--Sobic006G216600 Sobic001G085400--Sobic003G249700 Sobic003G387900 Sobic003G387900 Sobic001G085400--Sobic003G387900 Sobic001G085400--Sobic007G178600 Sobic002G406500 Sobic002G406500 Sobic001G085400--Sobic002G406500 Sobic008G021100--Sobic001G058900 Sobic008G021100--Sobic002G115000 Sobic006G221200 Sobic006G221200 Sobic008G021100--Sobic006G221200 Sobic008G021100--Sobic002G049300 Sobic008G021100--Sobic008G135000 Sobic008G021100--Sobic009G233400 Sobic008G021100--Sobic001G085400 Sobic008G021100--Sobic001G510800 Sobic008G021100--Sobic001G334300 Sobic001G058900--Sobic008G135000 Sobic001G058900--Sobic002G304900 Sobic001G058900--Sobic002G115000 Sobic001G058900--Sobic009G233400 Sobic001G058900--Sobic001G085400 Sobic001G058900--Sobic008G098800 Sobic001G058900--Sobic002G049300 Sobic001G058900--Sobic003G249700 Sobic001G058900--Sobic001G334300 Sobic003G443300 Sobic003G443300 Sobic006G156000--Sobic003G443300 Sobic001G432000 Sobic001G432000 Sobic006G156000--Sobic001G432000 Sobic005G168100 Sobic005G168100 Sobic006G156000--Sobic005G168100 Sobic003G219800 Sobic003G219800 Sobic006G156000--Sobic003G219800 Sobic001G084100 Sobic001G084100 Sobic006G156000--Sobic001G084100 Sobic001G304400 Sobic001G304400 Sobic006G156000--Sobic001G304400 Sobic009G212200 Sobic009G212200 Sobic006G156000--Sobic009G212200 Sobic002G361700 Sobic002G361700 Sobic006G156000--Sobic002G361700 Sobic001G040100 Sobic001G040100 Sobic006G156000--Sobic001G040100
Octagon: transcription factors


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