Gene annotation
| Transcriptome id | Sobic.003G348800.1 |
|---|---|
| Synonym | ATUXS1, Sb03g039180, UXS1 |
| Functional annotation | NAD dependent epimerase/dehydratase family domain containing protein, expressed |
| UniProt | C5XP33 |
| Pfam | PF01073 |
| Panther DB | PTHR10366 PTHR10366:SF361 |
| NCBI CDD | - |
| KEGG Orthology | K08678; UXS1, UDP-glucuronate decarboxylase |
| Gene Ontology | GO:0016616; oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor GO:0006694steroid biosynthetic process GO:00038543-beta-hydroxy-delta5-steroid dehydrogenase activity |
Orthologs (automatic annotation)
| TAIR | AT3G53520 : UDP-glucuronic acid decarboxylase 1 |
|---|---|
| RAP-DB (Rice) | LOC_Os03g17230.1 : NAD dependent epimerase/dehydratase family domain containing protein, expressed |
| MaizeGDB (Corn) | Zm00025a026947 , Zm00025a052723 , Zm00025a039701 , Zm00025a043361 |
| Brachypodium | KQK10481 |
| Barley | HORVU3Hr1G087000.5 , HORVU3Hr1G087000.7 , HORVU3Hr1G087000.9 , HORVU3Hr1G087000.1 , HORVU3Hr1G087000.6 , HORVU3Hr1G087000.8 , HORVU3Hr1G087000.3 , HORVU3Hr1G087000.4 |
| Wheat | TraesCS3D02G349200 , TraesCS3B02G388100 , TraesCS4A02G099100 , TraesCS4D02G206100 , TraesCS3A02G355200 , TraesCS4B02G205200 |
| Populus | - |
JBrowse
| Sobic.003G348800 |
Expression pattern by RNA-Seq analysis
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Find similar expressed genes
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| Rank | Gene | Function | KEGG orthology |
|---|---|---|---|
| 1 | Sobic.001G338400 | glycosyl transferase 8 domain containing protein, putative, expressed | K13648: alpha-1,4-galacturonosyltransferase |
| 2 | Sobic.001G281900 | miro, putative, expressed | K07977: Arf/Sar family, other |
| 3 | Sobic.002G342500 | glycosyltransferase sugar-binding region containing DXD motif, putative, expressed | - |
| 4 | Sobic.001G230100 | 3-ketoacyl-CoA thiolase, peroxisomal precursor, putative, expressed | K07513: acetyl-CoA acyltransferase 1 |
| 5 | Sobic.001G220900 | adaptin ear-binding coat-associated protein 2, putative, expressed | - |
| 6 | Sobic.004G160200 | DUF803 domain containing, putative, expressed | - |
| 7 | Sobic.001G109300 | adenylyl cyclase-associated protein, putative, expressed | K17261: CAP1_2, adenylyl cyclase-associated protein |
| 8 | Sobic.004G257000 | transmembrane 9 superfamily member, putative, expressed | - |
| 9 | Sobic.008G150300 | Lg106, putative, expressed | - |
| 10 | Sobic.001G145500 | trafficking protein particle complex subunit 1, putative, expressed | - |
| 11 | Sobic.009G246700 | CAS1 domain-containing protein 1 precursor, putative, expressed | - |
| 12 | Sobic.003G254700 | glycosyltransferase family 43 protein, putative, expressed | - |
| 13 | Sobic.010G220600 | "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@copper-transporting ATPase, putative, expressed | K17686: copA, ctpA, P-type Cu+ transporter |
| 14 | Sobic.003G134800 | coatomer subunit beta-1, putative, expressed | K17301: COPB1, coatomer subunit beta |
| 15 | Sobic.010G216000 | villin protein, putative, expressed | K05768: gelsolin |
| 16 | Sobic.008G113600 | glutathione synthetase, chloroplast precursor, putative, expressed | K01920: glutathione synthase |
| 17 | Sobic.003G169900 | bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase,chloroplast precursor, putative, expressed | K13832: aroDE, 3-dehydroquinate dehydratase / shikimate dehydrogenase |
| 18 | Sobic.010G253300 | "domain confirmed by Pfam database, expressed in leaf and root, expression induced by IAA treatment"(PubMedID : 20499123)@auxin response factor 19, putative, expressed | - |
| 19 | Sobic.010G067500 | OsSCP32 - Putative Serine Carboxypeptidase homologue, expressed | K16297: serine carboxypeptidase-like clade II |
| 20 | Sobic.008G151500 | EXS family protein, putative, expressed | - |
Gene co-expression network
Octagon: transcription factors
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