Gene annotation
Transcriptome id Sobic.003G169900.1,Sobic.003G169900.2,Sobic.003G169900.3
Synonym Sb03g018040, EMB3004, MEE32
Functional annotation bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase,chloroplast precursor, putative, expressed
UniProt A0A1W0VXL7 , A0A1W0VXQ2 , C5XLB0
Pfam PF01488 PF08501 PF01487
Panther DB PTHR21089 PTHR21089:SF11
NCBI CDD KOG0692; Pentafunctional AROM protein
KEGG Orthology K13832; aroDE, 3-dehydroquinate dehydratase / shikimate dehydrogenase
Gene Ontology GO:0004764; shikimate 3-dehydrogenase (NADP+) activity GO:00038553-dehydroquinate dehydratase activity


Orthologs (automatic annotation)
TAIR AT3G06350 : dehydroquinate dehydratase, putative / shikimate dehydrogenase, putative
RAP-DB (Rice) LOC_Os01g27750.1 : bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase,chloroplast precursor, putative, expressed
MaizeGDB (Corn) Zm00025a024584
Brachypodium KQK04365 , KQK04366 , PNT70509 , PNT70512 , PNT70511 , PNT70510
Barley HORVU3Hr1G045480.8 , HORVU3Hr1G045480.6 , HORVU3Hr1G045480.7 , HORVU3Hr1G045480.4 , HORVU3Hr1G045480.5 , HORVU3Hr1G045480.2 , HORVU3Hr1G045480.3 , HORVU3Hr1G045480.1 , HORVU3Hr1G045480.10 , HORVU3Hr1G045480.11
Wheat TraesCS3A02G196700 , TraesCS3B02G229000 , TraesCS3B02G229000 , TraesCS3D02G205800 , TraesCS3D02G205800 , TraesCS3D02G205800
Populus -


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cDNA sequences
Sobic.003G169900


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.008G113600 glutathione synthetase, chloroplast precursor, putative, expressed K01920: glutathione synthase
2 Sobic.001G338400 glycosyl transferase 8 domain containing protein, putative, expressed K13648: alpha-1,4-galacturonosyltransferase
3 Sobic.008G150300 Lg106, putative, expressed -
4 Sobic.001G458800 mitochondrial-processing peptidase subunit, mitochondrial precursor, putative, expressed K17732: PMPCB, mitochondrial-processing peptidase subunit beta
5 Sobic.001G077900 SSA2 - 2S albumin seed storage family protein precursor, putative, expressed -
6 Sobic.003G196200 elongation factor TS family protein, expressed -
7 Sobic.008G072200 coatomer subunit delta, putative, expressed -
8 Sobic.001G458700 26S protease regulatory subunit 6B, putative, expressed K03063: PSMC4, 26S proteasome regulatory subunit T3
9 Sobic.003G348800 NAD dependent epimerase/dehydratase family domain containing protein, expressed K08678: UXS1, UDP-glucuronate decarboxylase
10 Sobic.004G212100 PPR repeat domain containing protein, putative, expressed -
11 Sobic.001G161700 vesicle-fusing ATPase, putative, expressed K06027: NSF, vesicle-fusing ATPase
12 Sobic.007G120800 puromycin-sensitive aminopeptidase, putative, expressed K08776: puromycin-sensitive aminopeptidase
13 Sobic.001G281900 miro, putative, expressed K07977: Arf/Sar family, other
14 Sobic.002G029300 pleckstrin homology domain-containing protein, putative, expressed -
15 Sobic.010G218300 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@DNA binding protein, putative, expressed -
16 Sobic.001G108600 SEC14 cytosolic factor family protein, putative, expressed -
17 Sobic.004G081800 Ubiquitin family domain containing protein, expressed K11885: DNA damage-inducible protein 1
18 Sobic.001G145500 trafficking protein particle complex subunit 1, putative, expressed -
19 Sobic.007G176200 26S proteasome non-ATPase regulatory subunit 3, putative, expressed K03033: PSMD3, 26S proteasome regulatory subunit N3
20 Sobic.004G326600 T-complex protein, putative, expressed K09493: CCT1, T-complex protein 1 subunit alpha


Gene co-expression network
sample Sobic003G169900 Sobic003G169900 Sobic008G113600 Sobic008G113600 Sobic003G169900--Sobic008G113600 Sobic001G338400 Sobic001G338400 Sobic003G169900--Sobic001G338400 Sobic008G150300 Sobic008G150300 Sobic003G169900--Sobic008G150300 Sobic001G458800 Sobic001G458800 Sobic003G169900--Sobic001G458800 Sobic001G077900 Sobic001G077900 Sobic003G169900--Sobic001G077900 Sobic003G196200 Sobic003G196200 Sobic003G169900--Sobic003G196200 Sobic008G072200 Sobic008G072200 Sobic003G169900--Sobic008G072200 Sobic001G458700 Sobic001G458700 Sobic003G169900--Sobic001G458700 Sobic003G348800 Sobic003G348800 Sobic003G169900--Sobic003G348800 Sobic009G139800 Sobic009G139800 Sobic008G113600--Sobic009G139800 Sobic008G113600--Sobic003G169900 Sobic002G375800 Sobic002G375800 Sobic008G113600--Sobic002G375800 Sobic001G220900 Sobic001G220900 Sobic008G113600--Sobic001G220900 Sobic008G113600--Sobic001G338400 Sobic007G075500 Sobic007G075500 Sobic008G113600--Sobic007G075500 Sobic008G113600--Sobic003G348800 Sobic008G113600--Sobic001G077900 Sobic001G109300 Sobic001G109300 Sobic008G113600--Sobic001G109300 Sobic001G338400--Sobic003G348800 Sobic001G338400--Sobic008G150300 Sobic001G281900 Sobic001G281900 Sobic001G338400--Sobic001G281900 Sobic001G145500 Sobic001G145500 Sobic001G338400--Sobic001G145500 Sobic004G010900 Sobic004G010900 Sobic001G338400--Sobic004G010900 Sobic001G490500 Sobic001G490500 Sobic001G338400--Sobic001G490500 Sobic001G230100 Sobic001G230100 Sobic001G338400--Sobic001G230100 Sobic002G342500 Sobic002G342500 Sobic001G338400--Sobic002G342500 Sobic006G029000 Sobic006G029000 Sobic001G338400--Sobic006G029000 Sobic003G170300 Sobic003G170300 Sobic008G150300--Sobic003G170300 Sobic008G150300--Sobic001G281900 Sobic008G150300--Sobic001G338400 Sobic008G150300--Sobic001G458800 Sobic007G161200 Sobic007G161200 Sobic008G150300--Sobic007G161200 Sobic002G410700 Sobic002G410700 Sobic008G150300--Sobic002G410700 Sobic005G105500 Sobic005G105500 Sobic008G150300--Sobic005G105500 Sobic007G159700 Sobic007G159700 Sobic008G150300--Sobic007G159700 Sobic006G211800 Sobic006G211800 Sobic008G150300--Sobic006G211800 Sobic003G034900 Sobic003G034900 Sobic001G458800--Sobic003G034900 Sobic009G224400 Sobic009G224400 Sobic001G458800--Sobic009G224400 Sobic006G058900 Sobic006G058900 Sobic001G458800--Sobic006G058900 Sobic001G115700 Sobic001G115700 Sobic001G458800--Sobic001G115700 Sobic007G171500 Sobic007G171500 Sobic001G458800--Sobic007G171500 Sobic001G073600 Sobic001G073600 Sobic001G458800--Sobic001G073600 Sobic002G186300 Sobic002G186300 Sobic001G458800--Sobic002G186300 Sobic002G395000 Sobic002G395000 Sobic001G458800--Sobic002G395000 Sobic001G031900 Sobic001G031900 Sobic001G458800--Sobic001G031900 Sobic001G443200 Sobic001G443200 Sobic001G077900--Sobic001G443200 Sobic002G141700 Sobic002G141700 Sobic001G077900--Sobic002G141700 Sobic001G077900--Sobic003G196200 Sobic001G161700 Sobic001G161700 Sobic001G077900--Sobic001G161700 Sobic003G009300 Sobic003G009300 Sobic001G077900--Sobic003G009300 Sobic001G077900--Sobic001G490500 Sobic001G077900--Sobic006G029000 Sobic004G000100 Sobic004G000100 Sobic001G077900--Sobic004G000100 Sobic006G232000 Sobic006G232000 Sobic001G077900--Sobic006G232000 Sobic001G387800 Sobic001G387800 Sobic003G196200--Sobic001G387800 Sobic008G102600 Sobic008G102600 Sobic003G196200--Sobic008G102600 Sobic003G196200--Sobic001G077900 Sobic004G045300 Sobic004G045300 Sobic003G196200--Sobic004G045300 Sobic003G196200--Sobic001G161700 Sobic001G178500 Sobic001G178500 Sobic003G196200--Sobic001G178500 Sobic008G110500 Sobic008G110500 Sobic003G196200--Sobic008G110500 Sobic003G196200--Sobic004G000100 Sobic001G473800 Sobic001G473800 Sobic003G196200--Sobic001G473800 Sobic002G070600 Sobic002G070600 Sobic008G072200--Sobic002G070600 Sobic008G072200--Sobic001G161700 Sobic004G336300 Sobic004G336300 Sobic008G072200--Sobic004G336300 Sobic008G072200--Sobic001G115700 Sobic001G117800 Sobic001G117800 Sobic008G072200--Sobic001G117800 Sobic002G029300 Sobic002G029300 Sobic008G072200--Sobic002G029300 Sobic008G072200--Sobic001G490500 Sobic003G134800 Sobic003G134800 Sobic008G072200--Sobic003G134800 Sobic008G085700 Sobic008G085700 Sobic008G072200--Sobic008G085700 Sobic007G176200 Sobic007G176200 Sobic001G458700--Sobic007G176200 Sobic006G252200 Sobic006G252200 Sobic001G458700--Sobic006G252200 Sobic001G010700 Sobic001G010700 Sobic001G458700--Sobic001G010700 Sobic002G341800 Sobic002G341800 Sobic001G458700--Sobic002G341800 Sobic004G224900 Sobic004G224900 Sobic001G458700--Sobic004G224900 Sobic003G330500 Sobic003G330500 Sobic001G458700--Sobic003G330500 Sobic001G283200 Sobic001G283200 Sobic001G458700--Sobic001G283200 Sobic001G502200 Sobic001G502200 Sobic001G458700--Sobic001G502200 Sobic004G081800 Sobic004G081800 Sobic001G458700--Sobic004G081800 Sobic003G348800--Sobic001G338400 Sobic003G348800--Sobic001G281900 Sobic003G348800--Sobic002G342500 Sobic003G348800--Sobic001G230100 Sobic003G348800--Sobic001G220900 Sobic004G160200 Sobic004G160200 Sobic003G348800--Sobic004G160200 Sobic003G348800--Sobic001G109300 Sobic004G257000 Sobic004G257000 Sobic003G348800--Sobic004G257000 Sobic003G348800--Sobic008G150300
Octagon: transcription factors


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