Gene annotation
Transcriptome id Sobic.001G145500.1
Synonym Sb01g012690
Functional annotation trafficking protein particle complex subunit 1, putative, expressed
UniProt C5WQD7
Pfam PF04628
Panther DB PTHR23249 PTHR23249:SF16
NCBI CDD KOG3368; Transport protein particle (TRAPP) complex subunit
KEGG Orthology -
Gene Ontology GO:0006888; endoplasmic reticulum to Golgi vesicle-mediated transport GO:0005622intracellular GO:0005801cis-Golgi network


Orthologs (automatic annotation)
TAIR AT1G51160 : SNARE-like superfamily protein
RAP-DB (Rice) LOC_Os01g33020.2 : trafficking protein particle complex subunit 1, putative, expressed
MaizeGDB (Corn) Zm00025a017181 , Zm00025a007530
Brachypodium KQK03376
Barley HORVU4Hr1G027600.2 , HORVU4Hr1G027600.1
Wheat TraesCS3B02G177700 , TraesCS3A02G150900 , TraesCS3D02G158700
Populus -


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cDNA sequences
Sobic.001G145500


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G444300 expressed protein -
2 Sobic.005G105500 expressed protein -
3 Sobic.001G338400 glycosyl transferase 8 domain containing protein, putative, expressed K13648: alpha-1,4-galacturonosyltransferase
4 Sobic.001G281900 miro, putative, expressed K07977: Arf/Sar family, other
5 Sobic.007G176200 26S proteasome non-ATPase regulatory subunit 3, putative, expressed K03033: PSMD3, 26S proteasome regulatory subunit N3
6 Sobic.004G010900 OsFBK2 - F-box domain and kelch repeat containing protein, expressed -
7 Sobic.006G252200 MEE34, putative, expressed K03038: PSMD7, 26S proteasome regulatory subunit N8
8 Sobic.003G330500 peptidase, T1 family, putative, expressed -
9 Sobic.002G029300 pleckstrin homology domain-containing protein, putative, expressed -
10 Sobic.004G082900 26S protease regulatory subunit, putative, expressed K03064: PSMC6, 26S proteasome regulatory subunit T4
11 Sobic.001G220900 adaptin ear-binding coat-associated protein 2, putative, expressed -
12 Sobic.001G458700 26S protease regulatory subunit 6B, putative, expressed K03063: PSMC4, 26S proteasome regulatory subunit T3
13 Sobic.006G211800 coatomer subunit epsilon, putative, expressed K17268: coatomer subunit epsilon
14 Sobic.001G010700 proteasome subunit, putative, expressed K03035: PSMD12, 26S proteasome regulatory subunit N5
15 Sobic.008G150300 Lg106, putative, expressed -
16 Sobic.008G145100 glycosyl transferase, group 1 domain containing protein, expressed K03844: alpha-1,2-mannosyltransferase
17 Sobic.006G203100 expressed protein -
18 Sobic.002G342500 glycosyltransferase sugar-binding region containing DXD motif, putative, expressed -
19 Sobic.006G109700 UBA and UBX domain-containing protein, putative, expressed K14012: SHP1, UBX1, UBX domain-containing protein 1
20 Sobic.007G013300 protein kinase family protein, putative, expressed -


Gene co-expression network
sample Sobic001G145500 Sobic001G145500 Sobic001G444300 Sobic001G444300 Sobic001G145500--Sobic001G444300 Sobic005G105500 Sobic005G105500 Sobic001G145500--Sobic005G105500 Sobic001G338400 Sobic001G338400 Sobic001G145500--Sobic001G338400 Sobic001G281900 Sobic001G281900 Sobic001G145500--Sobic001G281900 Sobic007G176200 Sobic007G176200 Sobic001G145500--Sobic007G176200 Sobic004G010900 Sobic004G010900 Sobic001G145500--Sobic004G010900 Sobic006G252200 Sobic006G252200 Sobic001G145500--Sobic006G252200 Sobic003G330500 Sobic003G330500 Sobic001G145500--Sobic003G330500 Sobic002G029300 Sobic002G029300 Sobic001G145500--Sobic002G029300 Sobic001G444300--Sobic001G145500 Sobic006G109700 Sobic006G109700 Sobic001G444300--Sobic006G109700 Sobic002G423800 Sobic002G423800 Sobic001G444300--Sobic002G423800 Sobic006G211800 Sobic006G211800 Sobic001G444300--Sobic006G211800 Sobic001G444300--Sobic007G176200 Sobic001G444300--Sobic006G252200 Sobic002G428200 Sobic002G428200 Sobic001G444300--Sobic002G428200 Sobic003G104700 Sobic003G104700 Sobic001G444300--Sobic003G104700 Sobic004G348900 Sobic004G348900 Sobic001G444300--Sobic004G348900 Sobic005G105500--Sobic001G281900 Sobic001G458700 Sobic001G458700 Sobic005G105500--Sobic001G458700 Sobic002G341800 Sobic002G341800 Sobic005G105500--Sobic002G341800 Sobic005G105500--Sobic001G145500 Sobic001G096100 Sobic001G096100 Sobic005G105500--Sobic001G096100 Sobic005G105500--Sobic006G211800 Sobic005G105500--Sobic007G176200 Sobic005G105500--Sobic003G330500 Sobic006G002201 Sobic006G002201 Sobic005G105500--Sobic006G002201 Sobic003G348800 Sobic003G348800 Sobic001G338400--Sobic003G348800 Sobic008G150300 Sobic008G150300 Sobic001G338400--Sobic008G150300 Sobic001G338400--Sobic001G281900 Sobic001G338400--Sobic001G145500 Sobic001G338400--Sobic004G010900 Sobic001G490500 Sobic001G490500 Sobic001G338400--Sobic001G490500 Sobic001G230100 Sobic001G230100 Sobic001G338400--Sobic001G230100 Sobic002G342500 Sobic002G342500 Sobic001G338400--Sobic002G342500 Sobic006G029000 Sobic006G029000 Sobic001G338400--Sobic006G029000 Sobic001G281900--Sobic003G330500 Sobic001G281900--Sobic005G105500 Sobic001G281900--Sobic008G150300 Sobic001G281900--Sobic006G252200 Sobic001G196100 Sobic001G196100 Sobic001G281900--Sobic001G196100 Sobic001G281900--Sobic001G458700 Sobic001G281900--Sobic007G176200 Sobic001G281900--Sobic001G338400 Sobic001G281900--Sobic001G096100 Sobic007G176200--Sobic001G458700 Sobic001G010700 Sobic001G010700 Sobic007G176200--Sobic001G010700 Sobic007G176200--Sobic006G252200 Sobic007G176200--Sobic003G330500 Sobic004G224900 Sobic004G224900 Sobic007G176200--Sobic004G224900 Sobic007G176200--Sobic002G428200 Sobic004G335000 Sobic004G335000 Sobic007G176200--Sobic004G335000 Sobic007G176200--Sobic002G341800 Sobic009G067000 Sobic009G067000 Sobic007G176200--Sobic009G067000 Sobic001G206900 Sobic001G206900 Sobic004G010900--Sobic001G206900 Sobic004G010900--Sobic001G458700 Sobic004G082900 Sobic004G082900 Sobic004G010900--Sobic004G082900 Sobic004G010900--Sobic006G252200 Sobic010G205300 Sobic010G205300 Sobic004G010900--Sobic010G205300 Sobic003G261400 Sobic003G261400 Sobic004G010900--Sobic003G261400 Sobic004G010900--Sobic001G338400 Sobic001G283200 Sobic001G283200 Sobic004G010900--Sobic001G283200 Sobic003G349300 Sobic003G349300 Sobic004G010900--Sobic003G349300 Sobic006G252200--Sobic007G176200 Sobic006G252200--Sobic001G458700 Sobic006G252200--Sobic004G224900 Sobic006G252200--Sobic001G010700 Sobic006G252200--Sobic003G330500 Sobic006G252200--Sobic002G428200 Sobic004G138800 Sobic004G138800 Sobic006G252200--Sobic004G138800 Sobic006G252200--Sobic001G283200 Sobic006G252200--Sobic001G096100 Sobic003G330500--Sobic004G224900 Sobic003G330500--Sobic007G176200 Sobic007G076300 Sobic007G076300 Sobic003G330500--Sobic007G076300 Sobic003G330500--Sobic006G252200 Sobic003G330500--Sobic001G458700 Sobic003G330500--Sobic001G010700 Sobic001G502200 Sobic001G502200 Sobic003G330500--Sobic001G502200 Sobic003G330500--Sobic004G138800 Sobic003G330500--Sobic001G096100 Sobic001G023100 Sobic001G023100 Sobic002G029300--Sobic001G023100 Sobic007G173700 Sobic007G173700 Sobic002G029300--Sobic007G173700 Sobic004G031800 Sobic004G031800 Sobic002G029300--Sobic004G031800 Sobic008G072200 Sobic008G072200 Sobic002G029300--Sobic008G072200 Sobic002G029300--Sobic001G010700 Sobic009G226400 Sobic009G226400 Sobic002G029300--Sobic009G226400 Sobic001G161700 Sobic001G161700 Sobic002G029300--Sobic001G161700 Sobic002G141700 Sobic002G141700 Sobic002G029300--Sobic002G141700 Sobic006G056200 Sobic006G056200 Sobic002G029300--Sobic006G056200
Octagon: transcription factors


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