Gene annotation
Transcriptome id Sobic.010G220600.1
Synonym HMA7, Sb10g026600, RAN1
Functional annotation "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence." (PubMedID : 27586543)
copper-transporting ATPase, putative, expressed
UniProt A0A194YKS2
Pfam PF12710 PF00403 PF00122
Panther DB PTHR24093 PTHR24093:SF360
NCBI CDD -
KEGG Orthology K17686; copA, ctpA, P-type Cu+ transporter
Gene Ontology GO:0000166; nucleotide binding


Orthologs (automatic annotation)
TAIR AT5G44790 : copper-exporting ATPase / responsive-to-antagonist 1 / copper-transporting ATPase (RAN1)
RAP-DB (Rice) LOC_Os06g45500.1 : copper-transporting ATPase, putative, expressed
MaizeGDB (Corn) Zm00025a051747 , Zm00025a029429 , Zm00025a034785
Brachypodium KQJ93558 , KQK17019
Barley HORVU6Hr1G031960.7 , HORVU6Hr1G031960.6 , HORVU6Hr1G031960.5 , HORVU6Hr1G031960.4 , HORVU6Hr1G031960.3 , HORVU6Hr1G031960.2 , HORVU6Hr1G031960.1 , HORVU7Hr1G108890.5 , HORVU7Hr1G108890.4 , HORVU7Hr1G108890.7 , HORVU7Hr1G108890.6 , HORVU7Hr1G108890.1 , HORVU7Hr1G108890.3 , HORVU7Hr1G108890.2 , HORVU7Hr1G108890.9 , HORVU7Hr1G108890.8
Wheat TraesCS6D02G146500 , TraesCS6A02G156900 , TraesCS7B02G382300 , TraesCS7D02G467100 , TraesCS6B02G184800 , TraesCS7A02G480100 , TraesCS7A02G480100 , TraesCS7A02G480100
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.010G161450 - -
2 Sobic.003G432100 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@NAD kinase, putative, expressed K00858: ppnK, NAD+ kinase
3 Sobic.001G386400 phospholipid-transporting ATPase, putative, expressed K14802: DRS2, phospholipid-transporting ATPase
4 Sobic.003G348800 NAD dependent epimerase/dehydratase family domain containing protein, expressed K08678: UXS1, UDP-glucuronate decarboxylase
5 Sobic.007G221100 GRAM and C2 domains containing protein, putative, expressed -
6 Sobic.006G064800 heparan-alpha-glucosaminide N-acetyltransferase, putative, expressed -
7 Sobic.003G273700 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@uncharacterized protein PA4923, putative, expressed K06966: pyrimidine/purine-5'-nucleotide nucleosidase
8 Sobic.002G155400 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@serine/threonine-protein kinase BRI1-like 1 precursor, putative, expressed -
9 Sobic.010G192432 - K14431: transcription factor TGA
10 Sobic.001G049200 AMP-binding enzyme, putative, expressed -
11 Sobic.009G161401 - -
12 Sobic.003G019700 GDSL-like lipase/acylhydrolase, putative, expressed -
13 Sobic.004G311000 integral membrane protein DUF6 containing protein, expressed -
14 Sobic.009G139800 rab GDP dissociation inhibitor alpha, putative, expressed K17255: Rab GDP dissociation inhibitor
15 Sobic.001G460400 expressed protein -
16 Sobic.004G106900 "C3 PTPC, root-inducible gene"(PubMedID : 2308851)@SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@phosphoenolphyruvate carboxylase(PubMedID : 26904072)@phosphoenolpyruvate carboxylase, putative, expressed K01595: phosphoenolpyruvate carboxylase
17 Sobic.004G111100 GDSL-like lipase/acylhydrolase, putative, expressed -
18 Sobic.001G109300 adenylyl cyclase-associated protein, putative, expressed K17261: CAP1_2, adenylyl cyclase-associated protein
19 Sobic.004G222800 expressed protein -
20 Sobic.004G103400 verticillium wilt disease resistance protein, putative, expressed -


Gene co-expression network
sample Sobic010G220600 Sobic010G220600 Sobic010G161450 Sobic010G161450 Sobic010G220600--Sobic010G161450 Sobic003G432100 Sobic003G432100 Sobic010G220600--Sobic003G432100 Sobic001G386400 Sobic001G386400 Sobic010G220600--Sobic001G386400 Sobic003G348800 Sobic003G348800 Sobic010G220600--Sobic003G348800 Sobic007G221100 Sobic007G221100 Sobic010G220600--Sobic007G221100 Sobic006G064800 Sobic006G064800 Sobic010G220600--Sobic006G064800 Sobic003G273700 Sobic003G273700 Sobic010G220600--Sobic003G273700 Sobic002G155400 Sobic002G155400 Sobic010G220600--Sobic002G155400 Sobic010G192432 Sobic010G192432 Sobic010G220600--Sobic010G192432 Sobic010G161450--Sobic010G220600 Sobic001G049200 Sobic001G049200 Sobic010G161450--Sobic001G049200 Sobic010G161450--Sobic001G386400 Sobic010G161450--Sobic006G064800 Sobic010G161450--Sobic003G273700 Sobic002G242500 Sobic002G242500 Sobic010G161450--Sobic002G242500 Sobic007G136100 Sobic007G136100 Sobic010G161450--Sobic007G136100 Sobic003G167500 Sobic003G167500 Sobic010G161450--Sobic003G167500 Sobic010G161450--Sobic007G221100 Sobic003G432100--Sobic010G220600 Sobic002G306700 Sobic002G306700 Sobic003G432100--Sobic002G306700 Sobic009G139800 Sobic009G139800 Sobic003G432100--Sobic009G139800 Sobic003G432100--Sobic003G348800 Sobic003G432100--Sobic010G161450 Sobic002G194800 Sobic002G194800 Sobic003G432100--Sobic002G194800 Sobic007G065500 Sobic007G065500 Sobic003G432100--Sobic007G065500 Sobic003G092700 Sobic003G092700 Sobic003G432100--Sobic003G092700 Sobic001G109300 Sobic001G109300 Sobic003G432100--Sobic001G109300 Sobic006G119200 Sobic006G119200 Sobic001G386400--Sobic006G119200 Sobic009G167700 Sobic009G167700 Sobic001G386400--Sobic009G167700 Sobic009G000200 Sobic009G000200 Sobic001G386400--Sobic009G000200 Sobic003G316300 Sobic003G316300 Sobic001G386400--Sobic003G316300 Sobic001G386400--Sobic002G155400 Sobic001G386400--Sobic010G161450 Sobic004G106900 Sobic004G106900 Sobic001G386400--Sobic004G106900 Sobic002G024100 Sobic002G024100 Sobic001G386400--Sobic002G024100 Sobic004G341200 Sobic004G341200 Sobic001G386400--Sobic004G341200 Sobic001G338400 Sobic001G338400 Sobic003G348800--Sobic001G338400 Sobic001G281900 Sobic001G281900 Sobic003G348800--Sobic001G281900 Sobic002G342500 Sobic002G342500 Sobic003G348800--Sobic002G342500 Sobic001G230100 Sobic001G230100 Sobic003G348800--Sobic001G230100 Sobic001G220900 Sobic001G220900 Sobic003G348800--Sobic001G220900 Sobic004G160200 Sobic004G160200 Sobic003G348800--Sobic004G160200 Sobic003G348800--Sobic001G109300 Sobic004G257000 Sobic004G257000 Sobic003G348800--Sobic004G257000 Sobic008G150300 Sobic008G150300 Sobic003G348800--Sobic008G150300 Sobic007G221100--Sobic002G242500 Sobic007G221100--Sobic001G049200 Sobic007G221100--Sobic003G273700 Sobic009G179200 Sobic009G179200 Sobic007G221100--Sobic009G179200 Sobic001G456100 Sobic001G456100 Sobic007G221100--Sobic001G456100 Sobic007G221100--Sobic010G192432 Sobic006G191100 Sobic006G191100 Sobic007G221100--Sobic006G191100 Sobic006G075600 Sobic006G075600 Sobic007G221100--Sobic006G075600 Sobic007G221100--Sobic010G220600 Sobic006G087900 Sobic006G087900 Sobic006G064800--Sobic006G087900 Sobic005G195600 Sobic005G195600 Sobic006G064800--Sobic005G195600 Sobic003G374700 Sobic003G374700 Sobic006G064800--Sobic003G374700 Sobic002G362900 Sobic002G362900 Sobic006G064800--Sobic002G362900 Sobic006G064800--Sobic010G161450 Sobic001G012800 Sobic001G012800 Sobic006G064800--Sobic001G012800 Sobic001G051800 Sobic001G051800 Sobic006G064800--Sobic001G051800 Sobic010G236500 Sobic010G236500 Sobic006G064800--Sobic010G236500 Sobic009G073000 Sobic009G073000 Sobic006G064800--Sobic009G073000 Sobic001G302500 Sobic001G302500 Sobic003G273700--Sobic001G302500 Sobic003G273700--Sobic010G192432 Sobic010G194100 Sobic010G194100 Sobic003G273700--Sobic010G194100 Sobic006G230300 Sobic006G230300 Sobic003G273700--Sobic006G230300 Sobic002G283900 Sobic002G283900 Sobic003G273700--Sobic002G283900 Sobic003G273700--Sobic007G221100 Sobic003G389000 Sobic003G389000 Sobic003G273700--Sobic003G389000 Sobic003G273700--Sobic001G456100 Sobic003G273700--Sobic010G161450 Sobic002G155400--Sobic001G386400 Sobic009G161401 Sobic009G161401 Sobic002G155400--Sobic009G161401 Sobic002G155400--Sobic006G119200 Sobic008G044000 Sobic008G044000 Sobic002G155400--Sobic008G044000 Sobic002G322900 Sobic002G322900 Sobic002G155400--Sobic002G322900 Sobic010G206000 Sobic010G206000 Sobic002G155400--Sobic010G206000 Sobic001G512800 Sobic001G512800 Sobic002G155400--Sobic001G512800 Sobic002G155400--Sobic004G341200 Sobic002G155400--Sobic004G106900 Sobic010G192366 Sobic010G192366 Sobic010G192432--Sobic010G192366 Sobic004G078800 Sobic004G078800 Sobic010G192432--Sobic004G078800 Sobic003G227700 Sobic003G227700 Sobic010G192432--Sobic003G227700 Sobic001G483600 Sobic001G483600 Sobic010G192432--Sobic001G483600 Sobic001G067100 Sobic001G067100 Sobic010G192432--Sobic001G067100 Sobic006G135300 Sobic006G135300 Sobic010G192432--Sobic006G135300 Sobic010G097200 Sobic010G097200 Sobic010G192432--Sobic010G097200 Sobic010G071400 Sobic010G071400 Sobic010G192432--Sobic010G071400 Sobic007G100700 Sobic007G100700 Sobic010G192432--Sobic007G100700
Octagon: transcription factors


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