Gene annotation
Transcriptome id Sobic.004G311000.1
Synonym Sb04g034330
Functional annotation integral membrane protein DUF6 containing protein, expressed
UniProt C5XSW8
Pfam PF00892
Panther DB PTHR31218 PTHR31218:SF21
NCBI CDD -
KEGG Orthology -
Gene Ontology GO:0016021; integral component of membrane GO:0016020membrane


Orthologs (automatic annotation)
TAIR AT1G44800 : nodulin MtN21 /EamA-like transporter family protein
RAP-DB (Rice) LOC_Os02g52930.1 : integral membrane protein DUF6 containing protein, expressed
MaizeGDB (Corn) Zm00025a022241 , Zm00025a049597
Brachypodium KQJ96433 , KQK01685 , KQK01727 , PNT67237
Barley HORVU7Hr1G035430.4 , HORVU7Hr1G035430.7 , HORVU7Hr1G035430.1 , HORVU7Hr1G035430.6 , HORVU6Hr1G080260.4 , HORVU6Hr1G080260.5 , HORVU6Hr1G080260.1 , HORVU6Hr1G080260.2 , HORVU6Hr1G080260.3 , HORVU6Hr1G080270.9 , HORVU6Hr1G080270.8 , HORVU6Hr1G080270.3 , HORVU6Hr1G080270.1 , HORVU6Hr1G080270.6 , HORVU6Hr1G080270.5 , HORVU6Hr1G080270.4 , HORVU6Hr1G080270.12 , HORVU6Hr1G080270.10
Wheat TraesCS6D02G308900 , TraesCS6D02G308500 , TraesCS6A02G329600 , TraesCS6A02G330000 , TraesCS6D02G309000 , TraesCS6B02G360400 , TraesCS7A02G169100 , TraesCS6A02G329900 , TraesCS6A02G329900 , TraesCS6B02G360800 , TraesCS6B02G360600 , TraesCS7D02G170200 , TraesCS6A02G330100 , TraesCS7B02G073900 , TraesCS6B02G360700
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.009G073800 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@Up-reguralion under drought(PubMedID : 24916767)@helix-loop-helix DNA-binding domain containing protein, expressed -
2 Sobic.009G161401 - -
3 Sobic.003G229200 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@cytochrome P450 72A1, putative, expressed K07424: cytochrome P450 family 3 subfamily A
4 Sobic.001G302500 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence./late senescence marker (common during developmental, salt-induced, and dark-induced senescence)"(PubMedID : 27586543)@flavin-containing monooxygenase family protein, putative, expressed -
5 Sobic.002G017600 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@expressed protein -
6 Sobic.007G078100 UPF0041 domain containing protein, putative, expressed -
7 Sobic.002G257300 ribulose-phosphate 3-epimerase, putative, expressed K01783: rpe, ribulose-phosphate 3-epimerase
8 Sobic.002G185800 transporter, putative, expressed -
9 Sobic.010G220600 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@copper-transporting ATPase, putative, expressed K17686: copA, ctpA, P-type Cu+ transporter
10 Sobic.002G024100 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@lectin-like receptor kinase, putative, expressed -
11 Sobic.009G172500 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence./late senescence marker (common during developmental, salt-induced, and dark-induced senescence)"(PubMedID : 27586543)@aminotransferase, putative, expressed K00827: alanine-glyoxylate transaminase / (R)-3-amino-2-methylpropionate-pyruvate transaminase
12 Sobic.003G029400 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@avr9/Cf-9 rapidly elicited protein 146, putative, expressed -
13 Sobic.003G273700 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@uncharacterized protein PA4923, putative, expressed K06966: pyrimidine/purine-5'-nucleotide nucleosidase
14 Sobic.006G142332 - -
15 Sobic.005G152200 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence./late senescence marker during developmental senescence(PubMedID : 27586543)@aminotransferase, classes I and II, domain containing protein, expressed K00815: tyrosine aminotransferase
16 Sobic.007G008200 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@invertase/pectin methylesterase inhibitor family protein, putative, expressed -
17 Sobic.001G353300 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@uncharacterized glycosyl hydrolase Rv2006/MT2062, putative, expressed K01087: trehalose 6-phosphate phosphatase
18 Sobic.010G161450 - -
19 Sobic.010G067400 receptor-like protein kinase precursor, putative, expressed -
20 Sobic.001G318000 glutathione S-transferase GSTU6, putative, expressed K00799: GST, glutathione S-transferase


Gene co-expression network
sample Sobic004G311000 Sobic004G311000 Sobic009G073800 Sobic009G073800 Sobic004G311000--Sobic009G073800 Sobic009G161401 Sobic009G161401 Sobic004G311000--Sobic009G161401 Sobic003G229200 Sobic003G229200 Sobic004G311000--Sobic003G229200 Sobic001G302500 Sobic001G302500 Sobic004G311000--Sobic001G302500 Sobic002G017600 Sobic002G017600 Sobic004G311000--Sobic002G017600 Sobic007G078100 Sobic007G078100 Sobic004G311000--Sobic007G078100 Sobic002G257300 Sobic002G257300 Sobic004G311000--Sobic002G257300 Sobic002G185800 Sobic002G185800 Sobic004G311000--Sobic002G185800 Sobic010G220600 Sobic010G220600 Sobic004G311000--Sobic010G220600 Sobic008G034700 Sobic008G034700 Sobic009G073800--Sobic008G034700 Sobic008G172500 Sobic008G172500 Sobic009G073800--Sobic008G172500 Sobic003G269500 Sobic003G269500 Sobic009G073800--Sobic003G269500 Sobic002G365600 Sobic002G365600 Sobic009G073800--Sobic002G365600 Sobic005G066000 Sobic005G066000 Sobic009G073800--Sobic005G066000 Sobic002G389100 Sobic002G389100 Sobic009G073800--Sobic002G389100 Sobic006G183900 Sobic006G183900 Sobic009G073800--Sobic006G183900 Sobic006G074200 Sobic006G074200 Sobic009G073800--Sobic006G074200 Sobic010G067400 Sobic010G067400 Sobic009G073800--Sobic010G067400 Sobic009G161401--Sobic003G229200 Sobic002G155400 Sobic002G155400 Sobic009G161401--Sobic002G155400 Sobic009G161401--Sobic001G302500 Sobic009G172500 Sobic009G172500 Sobic009G161401--Sobic009G172500 Sobic002G024100 Sobic002G024100 Sobic009G161401--Sobic002G024100 Sobic009G161401--Sobic004G311000 Sobic003G080900 Sobic003G080900 Sobic009G161401--Sobic003G080900 Sobic003G273700 Sobic003G273700 Sobic009G161401--Sobic003G273700 Sobic004G074500 Sobic004G074500 Sobic009G161401--Sobic004G074500 Sobic003G229200--Sobic009G161401 Sobic003G229200--Sobic001G302500 Sobic006G096400 Sobic006G096400 Sobic003G229200--Sobic006G096400 Sobic003G229200--Sobic002G024100 Sobic003G229200--Sobic003G273700 Sobic003G229200--Sobic003G080900 Sobic004G347300 Sobic004G347300 Sobic003G229200--Sobic004G347300 Sobic003G229200--Sobic007G078100 Sobic005G152200 Sobic005G152200 Sobic003G229200--Sobic005G152200 Sobic001G302500--Sobic003G273700 Sobic001G062500 Sobic001G062500 Sobic001G302500--Sobic001G062500 Sobic001G302500--Sobic002G185800 Sobic002G283900 Sobic002G283900 Sobic001G302500--Sobic002G283900 Sobic006G256900 Sobic006G256900 Sobic001G302500--Sobic006G256900 Sobic009G219200 Sobic009G219200 Sobic001G302500--Sobic009G219200 Sobic010G148800 Sobic010G148800 Sobic001G302500--Sobic010G148800 Sobic003G140700 Sobic003G140700 Sobic001G302500--Sobic003G140700 Sobic001G438200 Sobic001G438200 Sobic001G302500--Sobic001G438200 Sobic009G082700 Sobic009G082700 Sobic002G017600--Sobic009G082700 Sobic002G017600--Sobic004G311000 Sobic002G017600--Sobic003G229200 Sobic002G017600--Sobic007G078100 Sobic009G032800 Sobic009G032800 Sobic002G017600--Sobic009G032800 Sobic007G098400 Sobic007G098400 Sobic002G017600--Sobic007G098400 Sobic001G010400 Sobic001G010400 Sobic002G017600--Sobic001G010400 Sobic001G247900 Sobic001G247900 Sobic002G017600--Sobic001G247900 Sobic010G117200 Sobic010G117200 Sobic002G017600--Sobic010G117200 Sobic004G276100 Sobic004G276100 Sobic007G078100--Sobic004G276100 Sobic007G078100--Sobic002G257300 Sobic007G161400 Sobic007G161400 Sobic007G078100--Sobic007G161400 Sobic010G154700 Sobic010G154700 Sobic007G078100--Sobic010G154700 Sobic004G272800 Sobic004G272800 Sobic007G078100--Sobic004G272800 Sobic004G051700 Sobic004G051700 Sobic007G078100--Sobic004G051700 Sobic005G188100 Sobic005G188100 Sobic007G078100--Sobic005G188100 Sobic001G132100 Sobic001G132100 Sobic007G078100--Sobic001G132100 Sobic001G048832 Sobic001G048832 Sobic007G078100--Sobic001G048832 Sobic002G398901 Sobic002G398901 Sobic002G257300--Sobic002G398901 Sobic001G418900 Sobic001G418900 Sobic002G257300--Sobic001G418900 Sobic002G190900 Sobic002G190900 Sobic002G257300--Sobic002G190900 Sobic003G209000 Sobic003G209000 Sobic002G257300--Sobic003G209000 Sobic002G257300--Sobic004G051700 Sobic010G239500 Sobic010G239500 Sobic002G257300--Sobic010G239500 Sobic002G418400 Sobic002G418400 Sobic002G257300--Sobic002G418400 Sobic009G119900 Sobic009G119900 Sobic002G257300--Sobic009G119900 Sobic003G363800 Sobic003G363800 Sobic002G257300--Sobic003G363800 Sobic005G046700 Sobic005G046700 Sobic002G185800--Sobic005G046700 Sobic004G139300 Sobic004G139300 Sobic002G185800--Sobic004G139300 Sobic002G216100 Sobic002G216100 Sobic002G185800--Sobic002G216100 Sobic006G197100 Sobic006G197100 Sobic002G185800--Sobic006G197100 Sobic001G264000 Sobic001G264000 Sobic002G185800--Sobic001G264000 Sobic007G178900 Sobic007G178900 Sobic002G185800--Sobic007G178900 Sobic007G176100 Sobic007G176100 Sobic002G185800--Sobic007G176100 Sobic002G185800--Sobic006G256900 Sobic007G176000 Sobic007G176000 Sobic002G185800--Sobic007G176000 Sobic010G161450 Sobic010G161450 Sobic010G220600--Sobic010G161450 Sobic003G432100 Sobic003G432100 Sobic010G220600--Sobic003G432100 Sobic001G386400 Sobic001G386400 Sobic010G220600--Sobic001G386400 Sobic003G348800 Sobic003G348800 Sobic010G220600--Sobic003G348800 Sobic007G221100 Sobic007G221100 Sobic010G220600--Sobic007G221100 Sobic006G064800 Sobic006G064800 Sobic010G220600--Sobic006G064800 Sobic010G220600--Sobic003G273700 Sobic010G220600--Sobic002G155400 Sobic010G192432 Sobic010G192432 Sobic010G220600--Sobic010G192432
Octagon: transcription factors


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