Gene annotation
Transcriptome id Sobic.006G142332.1,Sobic.006G142332.2
Synonym -
Functional annotation -
UniProt A0A1Z5RDW5 , A0A1Z5REJ8
Pfam PF17123 PF14624 PF00092
Panther DB PTHR10579 PTHR10579:SF49
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT2G38970 : Zinc finger (C3HC4-type RING finger) family protein
RAP-DB (Rice) LOC_Os04g42980.1 : zinc finger family protein, putative, expressed
MaizeGDB (Corn) Zm00025a056466 , Zm00025a031997
Brachypodium KQJ83505
Barley HORVU2Hr1G088110.8 , HORVU2Hr1G088110.9 , HORVU2Hr1G088110.6 , HORVU2Hr1G088110.4 , HORVU2Hr1G088110.5 , HORVU2Hr1G088110.2 , HORVU2Hr1G088110.3 , HORVU2Hr1G088110.1 , HORVU2Hr1G088110.10 , HORVU2Hr1G088110.7
Wheat TraesCS2D02G361900 , TraesCS2A02G364100 , TraesCS2A02G364100 , TraesCS6D02G207700 , TraesCS6D02G207700 , TraesCS2B02G382300 , TraesCS6B02G254400
Populus -


JBrowse

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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.004G069200 BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1 precursor, putative, expressed -
2 Sobic.001G161000 AGG2, putative, expressed -
3 Sobic.003G366600 anthocyanidin 3-O-glucosyltransferase, putative, expressed -
4 Sobic.004G262200 DNA binding protein, putative, expressed -
5 Sobic.006G157900 C2 domain containing protein, putative, expressed -
6 Sobic.004G024100 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@AT hook motif domain containing protein, expressed -
7 Sobic.006G059700 hydrolase, NUDIX family, domain containing protein, expressed K07766: diphosphoinositol-polyphosphate diphosphatase
8 Sobic.002G231600 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@glutathione S-transferase, putative, expressed K00799: GST, glutathione S-transferase
9 Sobic.001G453900 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@SEC14 cytosolic factor family protein, putative, expressed -
10 Sobic.010G110800 plastocyanin-like domain containing protein, putative, expressed -
11 Sobic.004G264000 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@cysteine-rich receptor-like protein kinase 7 precursor, putative, expressed -
12 Sobic.003G404600 regulatory protein, putative, expressed -
13 Sobic.006G044100 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@cytochrome P450, putative, expressed -
14 Sobic.004G042000 apoptosis-inducing factor 2, putative, expressed -
15 Sobic.001G090000 expressed protein -
16 Sobic.006G197100 DNA binding protein, putative, expressed -
17 Sobic.002G411900 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@SRC2 protein, putative, expressed -
18 Sobic.001G247600 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@NAD dependent epimerase/dehydratase family protein, putative, expressed K10046: GDP-D-mannose 3', 5'-epimerase
19 Sobic.006G136800 "shikimate hydroxycinnamoyl transferase, the MYB transcription factor binding domain AACG element"(PubMedID : 24045932)@SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@transferase family protein, putative, expressed K13065: E2.3.1.133, shikimate O-hydroxycinnamoyltransferase
20 Sobic.004G349125 - -


Gene co-expression network
sample Sobic006G142332 Sobic006G142332 Sobic004G069200 Sobic004G069200 Sobic006G142332--Sobic004G069200 Sobic001G161000 Sobic001G161000 Sobic006G142332--Sobic001G161000 Sobic003G366600 Sobic003G366600 Sobic006G142332--Sobic003G366600 Sobic004G262200 Sobic004G262200 Sobic006G142332--Sobic004G262200 Sobic006G157900 Sobic006G157900 Sobic006G142332--Sobic006G157900 Sobic004G024100 Sobic004G024100 Sobic006G142332--Sobic004G024100 Sobic006G059700 Sobic006G059700 Sobic006G142332--Sobic006G059700 Sobic002G231600 Sobic002G231600 Sobic006G142332--Sobic002G231600 Sobic001G453900 Sobic001G453900 Sobic006G142332--Sobic001G453900 Sobic001G247600 Sobic001G247600 Sobic004G069200--Sobic001G247600 Sobic003G379800 Sobic003G379800 Sobic004G069200--Sobic003G379800 Sobic004G069200--Sobic006G059700 Sobic004G225900 Sobic004G225900 Sobic004G069200--Sobic004G225900 Sobic001G070800 Sobic001G070800 Sobic004G069200--Sobic001G070800 Sobic006G136800 Sobic006G136800 Sobic004G069200--Sobic006G136800 Sobic002G312900 Sobic002G312900 Sobic004G069200--Sobic002G312900 Sobic001G009500 Sobic001G009500 Sobic004G069200--Sobic001G009500 Sobic010G185000 Sobic010G185000 Sobic004G069200--Sobic010G185000 Sobic001G161000--Sobic004G024100 Sobic006G197100 Sobic006G197100 Sobic001G161000--Sobic006G197100 Sobic001G147900 Sobic001G147900 Sobic001G161000--Sobic001G147900 Sobic002G185800 Sobic002G185800 Sobic001G161000--Sobic002G185800 Sobic007G165400 Sobic007G165400 Sobic001G161000--Sobic007G165400 Sobic003G079400 Sobic003G079400 Sobic001G161000--Sobic003G079400 Sobic003G368600 Sobic003G368600 Sobic001G161000--Sobic003G368600 Sobic001G082600 Sobic001G082600 Sobic001G161000--Sobic001G082600 Sobic007G176000 Sobic007G176000 Sobic001G161000--Sobic007G176000 Sobic004G348400 Sobic004G348400 Sobic003G366600--Sobic004G348400 Sobic006G044100 Sobic006G044100 Sobic003G366600--Sobic006G044100 Sobic003G366600--Sobic006G157900 Sobic003G366600--Sobic010G185000 Sobic003G404600 Sobic003G404600 Sobic003G366600--Sobic003G404600 Sobic001G481400 Sobic001G481400 Sobic003G366600--Sobic001G481400 Sobic001G403000 Sobic001G403000 Sobic003G366600--Sobic001G403000 Sobic009G072900 Sobic009G072900 Sobic003G366600--Sobic009G072900 Sobic003G366600--Sobic006G059700 Sobic003G371750 Sobic003G371750 Sobic004G262200--Sobic003G371750 Sobic004G262200--Sobic006G059700 Sobic001G328800 Sobic001G328800 Sobic004G262200--Sobic001G328800 Sobic003G280400 Sobic003G280400 Sobic004G262200--Sobic003G280400 Sobic004G262200--Sobic006G197100 Sobic004G042000 Sobic004G042000 Sobic004G262200--Sobic004G042000 Sobic006G260200 Sobic006G260200 Sobic004G262200--Sobic006G260200 Sobic009G221500 Sobic009G221500 Sobic004G262200--Sobic009G221500 Sobic004G262200--Sobic003G404600 Sobic010G001000 Sobic010G001000 Sobic006G157900--Sobic010G001000 Sobic006G157900--Sobic003G366600 Sobic003G007600 Sobic003G007600 Sobic006G157900--Sobic003G007600 Sobic006G103000 Sobic006G103000 Sobic006G157900--Sobic006G103000 Sobic003G311800 Sobic003G311800 Sobic006G157900--Sobic003G311800 Sobic001G302600 Sobic001G302600 Sobic006G157900--Sobic001G302600 Sobic004G202400 Sobic004G202400 Sobic006G157900--Sobic004G202400 Sobic010G270500 Sobic010G270500 Sobic006G157900--Sobic010G270500 Sobic002G336700 Sobic002G336700 Sobic006G157900--Sobic002G336700 Sobic004G024100--Sobic003G404600 Sobic006G256900 Sobic006G256900 Sobic004G024100--Sobic006G256900 Sobic004G024100--Sobic001G147900 Sobic004G024100--Sobic006G197100 Sobic003G152200 Sobic003G152200 Sobic004G024100--Sobic003G152200 Sobic004G024100--Sobic006G059700 Sobic004G024100--Sobic001G161000 Sobic004G024100--Sobic004G042000 Sobic010G110800 Sobic010G110800 Sobic004G024100--Sobic010G110800 Sobic006G059700--Sobic003G404600 Sobic006G059700--Sobic004G262200 Sobic006G059700--Sobic003G280400 Sobic010G272300 Sobic010G272300 Sobic006G059700--Sobic010G272300 Sobic006G059700--Sobic010G001000 Sobic006G059700--Sobic003G366600 Sobic006G059700--Sobic001G147900 Sobic006G125100 Sobic006G125100 Sobic006G059700--Sobic006G125100 Sobic006G059700--Sobic002G312900 Sobic004G318700 Sobic004G318700 Sobic002G231600--Sobic004G318700 Sobic002G231600--Sobic004G042000 Sobic002G231600--Sobic006G157900 Sobic002G231600--Sobic004G202400 Sobic004G349125 Sobic004G349125 Sobic002G231600--Sobic004G349125 Sobic002G231600--Sobic010G001000 Sobic001G416200 Sobic001G416200 Sobic002G231600--Sobic001G416200 Sobic003G016100 Sobic003G016100 Sobic002G231600--Sobic003G016100 Sobic009G109000 Sobic009G109000 Sobic002G231600--Sobic009G109000 Sobic003G121500 Sobic003G121500 Sobic001G453900--Sobic003G121500 Sobic002G001700 Sobic002G001700 Sobic001G453900--Sobic002G001700 Sobic001G453900--Sobic007G165400 Sobic004G126700 Sobic004G126700 Sobic001G453900--Sobic004G126700 Sobic007G176100 Sobic007G176100 Sobic001G453900--Sobic007G176100 Sobic001G453900--Sobic007G176000 Sobic001G453900--Sobic010G110800 Sobic010G067400 Sobic010G067400 Sobic001G453900--Sobic010G067400 Sobic008G055100 Sobic008G055100 Sobic001G453900--Sobic008G055100
Octagon: transcription factors


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