Gene annotation
Transcriptome id Sobic.004G262200.2,Sobic.004G262200.3
Synonym Sb04g030040, AHL19
Functional annotation DNA binding protein, putative, expressed
UniProt C5XZX4
Pfam PF03479
Panther DB PTHR31100:SF5 PTHR31100
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT1G76500 : Predicted AT-hook DNA-binding family protein
RAP-DB (Rice) LOC_Os02g48320.1,LOC_Os02g48320.3 : DNA binding protein, putative, expressed
MaizeGDB (Corn) Zm00025a032511 , Zm00025a021796 , Zm00025a051503
Brachypodium KQK01003
Barley HORVU6Hr1G070090.1 , HORVU6Hr1G070090.2 , HORVU6Hr1G070090.3 , HORVU6Hr1G070090.4 , HORVU6Hr1G070090.5 , HORVU6Hr1G091740.1 , HORVU6Hr1G091740.3 , HORVU6Hr1G091740.2
Wheat -
Populus -


JBrowse

Open New Page


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.003G371750 - -
2 Sobic.006G059700 hydrolase, NUDIX family, domain containing protein, expressed K07766: diphosphoinositol-polyphosphate diphosphatase
3 Sobic.001G328800 expressed protein -
4 Sobic.003G280400 hexokinase, putative, expressed K00844: hexokinase
5 Sobic.006G197100 DNA binding protein, putative, expressed -
6 Sobic.004G042000 apoptosis-inducing factor 2, putative, expressed -
7 Sobic.006G260200 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence./late senescence marker during developmental senescence(PubMedID : 27586543)@uncharacterized protein At4g06744 precursor, putative, expressed -
8 Sobic.009G221500 lipid phosphatase protein, putative, expressed -
9 Sobic.003G404600 regulatory protein, putative, expressed -
10 Sobic.004G024100 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@AT hook motif domain containing protein, expressed -
11 Sobic.004G148300 Cupin domain containing protein, expressed -
12 Sobic.006G157900 C2 domain containing protein, putative, expressed -
13 Sobic.005G078800 expressed protein -
14 Sobic.010G001000 expressed protein -
15 Sobic.002G003800 plastocyanin-like domain containing protein, putative, expressed -
16 Sobic.001G147900 cytochrome P450, putative, expressed -
17 Sobic.002G411900 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@SRC2 protein, putative, expressed -
18 Sobic.009G130100 CHIT17 - Chitinase family protein precursor, expressed K01183: chitinase
19 Sobic.003G215200 expressed protein -
20 Sobic.003G366600 anthocyanidin 3-O-glucosyltransferase, putative, expressed -


Gene co-expression network
sample Sobic004G262200 Sobic004G262200 Sobic003G371750 Sobic003G371750 Sobic004G262200--Sobic003G371750 Sobic006G059700 Sobic006G059700 Sobic004G262200--Sobic006G059700 Sobic001G328800 Sobic001G328800 Sobic004G262200--Sobic001G328800 Sobic003G280400 Sobic003G280400 Sobic004G262200--Sobic003G280400 Sobic006G197100 Sobic006G197100 Sobic004G262200--Sobic006G197100 Sobic004G042000 Sobic004G042000 Sobic004G262200--Sobic004G042000 Sobic006G260200 Sobic006G260200 Sobic004G262200--Sobic006G260200 Sobic009G221500 Sobic009G221500 Sobic004G262200--Sobic009G221500 Sobic003G404600 Sobic003G404600 Sobic004G262200--Sobic003G404600 Sobic003G371750--Sobic004G262200 Sobic002G326500 Sobic002G326500 Sobic003G371750--Sobic002G326500 Sobic002G003800 Sobic002G003800 Sobic003G371750--Sobic002G003800 Sobic010G062100 Sobic010G062100 Sobic003G371750--Sobic010G062100 Sobic001G304201 Sobic001G304201 Sobic003G371750--Sobic001G304201 Sobic003G371750--Sobic009G221500 Sobic003G371750--Sobic004G042000 Sobic003G305700 Sobic003G305700 Sobic003G371750--Sobic003G305700 Sobic003G371750--Sobic006G197100 Sobic006G059700--Sobic003G404600 Sobic006G059700--Sobic004G262200 Sobic006G059700--Sobic003G280400 Sobic010G272300 Sobic010G272300 Sobic006G059700--Sobic010G272300 Sobic010G001000 Sobic010G001000 Sobic006G059700--Sobic010G001000 Sobic003G366600 Sobic003G366600 Sobic006G059700--Sobic003G366600 Sobic001G147900 Sobic001G147900 Sobic006G059700--Sobic001G147900 Sobic006G125100 Sobic006G125100 Sobic006G059700--Sobic006G125100 Sobic002G312900 Sobic002G312900 Sobic006G059700--Sobic002G312900 Sobic006G157900 Sobic006G157900 Sobic001G328800--Sobic006G157900 Sobic010G270500 Sobic010G270500 Sobic001G328800--Sobic010G270500 Sobic001G328800--Sobic006G260200 Sobic003G311800 Sobic003G311800 Sobic001G328800--Sobic003G311800 Sobic001G328800--Sobic004G262200 Sobic003G007600 Sobic003G007600 Sobic001G328800--Sobic003G007600 Sobic003G299300 Sobic003G299300 Sobic001G328800--Sobic003G299300 Sobic006G235200 Sobic006G235200 Sobic001G328800--Sobic006G235200 Sobic010G270700 Sobic010G270700 Sobic001G328800--Sobic010G270700 Sobic007G161400 Sobic007G161400 Sobic003G280400--Sobic007G161400 Sobic003G280400--Sobic006G059700 Sobic010G110800 Sobic010G110800 Sobic003G280400--Sobic010G110800 Sobic007G204700 Sobic007G204700 Sobic003G280400--Sobic007G204700 Sobic003G280400--Sobic010G272300 Sobic001G264000 Sobic001G264000 Sobic003G280400--Sobic001G264000 Sobic005G065900 Sobic005G065900 Sobic003G280400--Sobic005G065900 Sobic003G280400--Sobic006G197100 Sobic006G256900 Sobic006G256900 Sobic003G280400--Sobic006G256900 Sobic006G197100--Sobic002G003800 Sobic006G197100--Sobic004G042000 Sobic004G349125 Sobic004G349125 Sobic006G197100--Sobic004G349125 Sobic001G416200 Sobic001G416200 Sobic006G197100--Sobic001G416200 Sobic004G202400 Sobic004G202400 Sobic006G197100--Sobic004G202400 Sobic006G197100--Sobic001G264000 Sobic006G197100--Sobic003G311800 Sobic002G042200 Sobic002G042200 Sobic006G197100--Sobic002G042200 Sobic003G368600 Sobic003G368600 Sobic006G197100--Sobic003G368600 Sobic004G042000--Sobic006G197100 Sobic004G042000--Sobic002G003800 Sobic004G042000--Sobic004G349125 Sobic004G042000--Sobic001G416200 Sobic002G213600 Sobic002G213600 Sobic004G042000--Sobic002G213600 Sobic001G302600 Sobic001G302600 Sobic004G042000--Sobic001G302600 Sobic004G042000--Sobic003G311800 Sobic004G042000--Sobic001G304201 Sobic004G042000--Sobic001G264000 Sobic001G238300 Sobic001G238300 Sobic006G260200--Sobic001G238300 Sobic002G425000 Sobic002G425000 Sobic006G260200--Sobic002G425000 Sobic002G261500 Sobic002G261500 Sobic006G260200--Sobic002G261500 Sobic004G297900 Sobic004G297900 Sobic006G260200--Sobic004G297900 Sobic006G122800 Sobic006G122800 Sobic006G260200--Sobic006G122800 Sobic007G090469 Sobic007G090469 Sobic006G260200--Sobic007G090469 Sobic006G260200--Sobic004G202400 Sobic006G260200--Sobic002G042200 Sobic001G237900 Sobic001G237900 Sobic006G260200--Sobic001G237900 Sobic007G050200 Sobic007G050200 Sobic009G221500--Sobic007G050200 Sobic009G221500--Sobic006G256900 Sobic009G219200 Sobic009G219200 Sobic009G221500--Sobic009G219200 Sobic004G322100 Sobic004G322100 Sobic009G221500--Sobic004G322100 Sobic010G148800 Sobic010G148800 Sobic009G221500--Sobic010G148800 Sobic009G199001 Sobic009G199001 Sobic009G221500--Sobic009G199001 Sobic004G323300 Sobic004G323300 Sobic009G221500--Sobic004G323300 Sobic001G438200 Sobic001G438200 Sobic009G221500--Sobic001G438200 Sobic001G430100 Sobic001G430100 Sobic009G221500--Sobic001G430100 Sobic003G404600--Sobic006G059700 Sobic003G404600--Sobic003G366600 Sobic003G404600--Sobic001G147900 Sobic010G185000 Sobic010G185000 Sobic003G404600--Sobic010G185000 Sobic003G404600--Sobic006G197100 Sobic004G227800 Sobic004G227800 Sobic003G404600--Sobic004G227800 Sobic004G024100 Sobic004G024100 Sobic003G404600--Sobic004G024100 Sobic004G348400 Sobic004G348400 Sobic003G404600--Sobic004G348400 Sobic003G404600--Sobic004G349125
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.