Gene annotation
Transcriptome id Sobic.004G148300.1
Synonym Sb04g019680
Functional annotation Cupin domain containing protein, expressed
UniProt C5XRV5
Pfam PF07883
Panther DB PTHR31238 PTHR31238:SF25
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT5G39110 : RmlC-like cupins superfamily protein
RAP-DB (Rice) LOC_Os02g29000.1 : Cupin domain containing protein, expressed
MaizeGDB (Corn) Zm00025a034250
Brachypodium -
Barley -
Wheat -
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.006G059700 hydrolase, NUDIX family, domain containing protein, expressed K07766: diphosphoinositol-polyphosphate diphosphatase
2 Sobic.006G260200 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence./late senescence marker during developmental senescence(PubMedID : 27586543)@uncharacterized protein At4g06744 precursor, putative, expressed -
3 Sobic.002G042200 gibberellin receptor GID1L2, putative, expressed -
4 Sobic.003G404600 regulatory protein, putative, expressed -
5 Sobic.003G368600 terpene synthase, putative, expressed -
6 Sobic.003G157600 expressed protein -
7 Sobic.001G328800 expressed protein -
8 Sobic.003G152200 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@peroxidase precursor, putative, expressed K00430: peroxidase
9 Sobic.003G366600 anthocyanidin 3-O-glucosyltransferase, putative, expressed -
10 Sobic.004G348400 oxidoreductase, 2OG-Fe oxygenase family protein, putative, expressed -
11 Sobic.006G157900 C2 domain containing protein, putative, expressed -
12 Sobic.004G262200 DNA binding protein, putative, expressed -
13 Sobic.006G243600 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@peroxidase precursor, putative, expressed K00430: peroxidase
14 Sobic.005G065900 glycine-rich cell wall structural protein 2 precursor, putative, expressed -
15 Sobic.010G270700 GDSL-like lipase/acylhydrolase, putative, expressed -
16 Sobic.009G074500 expressed protein -
17 Sobic.004G202400 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@high affinity nitrate transporter, putative, expressed -
18 Sobic.004G024100 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@AT hook motif domain containing protein, expressed -
19 Sobic.006G197100 DNA binding protein, putative, expressed -
20 Sobic.003G011600 3-methyl-2-oxobutanoate hydroxymethyltransferase, putative, expressed K00606: 3-methyl-2-oxobutanoate hydroxymethyltransferase


Gene co-expression network
sample Sobic004G148300 Sobic004G148300 Sobic006G059700 Sobic006G059700 Sobic004G148300--Sobic006G059700 Sobic006G260200 Sobic006G260200 Sobic004G148300--Sobic006G260200 Sobic002G042200 Sobic002G042200 Sobic004G148300--Sobic002G042200 Sobic003G404600 Sobic003G404600 Sobic004G148300--Sobic003G404600 Sobic003G368600 Sobic003G368600 Sobic004G148300--Sobic003G368600 Sobic003G157600 Sobic003G157600 Sobic004G148300--Sobic003G157600 Sobic001G328800 Sobic001G328800 Sobic004G148300--Sobic001G328800 Sobic003G152200 Sobic003G152200 Sobic004G148300--Sobic003G152200 Sobic003G366600 Sobic003G366600 Sobic004G148300--Sobic003G366600 Sobic006G059700--Sobic003G404600 Sobic004G262200 Sobic004G262200 Sobic006G059700--Sobic004G262200 Sobic003G280400 Sobic003G280400 Sobic006G059700--Sobic003G280400 Sobic010G272300 Sobic010G272300 Sobic006G059700--Sobic010G272300 Sobic010G001000 Sobic010G001000 Sobic006G059700--Sobic010G001000 Sobic006G059700--Sobic003G366600 Sobic001G147900 Sobic001G147900 Sobic006G059700--Sobic001G147900 Sobic006G125100 Sobic006G125100 Sobic006G059700--Sobic006G125100 Sobic002G312900 Sobic002G312900 Sobic006G059700--Sobic002G312900 Sobic001G238300 Sobic001G238300 Sobic006G260200--Sobic001G238300 Sobic002G425000 Sobic002G425000 Sobic006G260200--Sobic002G425000 Sobic002G261500 Sobic002G261500 Sobic006G260200--Sobic002G261500 Sobic004G297900 Sobic004G297900 Sobic006G260200--Sobic004G297900 Sobic006G122800 Sobic006G122800 Sobic006G260200--Sobic006G122800 Sobic007G090469 Sobic007G090469 Sobic006G260200--Sobic007G090469 Sobic004G202400 Sobic004G202400 Sobic006G260200--Sobic004G202400 Sobic006G260200--Sobic002G042200 Sobic001G237900 Sobic001G237900 Sobic006G260200--Sobic001G237900 Sobic006G197100 Sobic006G197100 Sobic002G042200--Sobic006G197100 Sobic004G139300 Sobic004G139300 Sobic002G042200--Sobic004G139300 Sobic002G042200--Sobic002G261500 Sobic005G065900 Sobic005G065900 Sobic002G042200--Sobic005G065900 Sobic010G148800 Sobic010G148800 Sobic002G042200--Sobic010G148800 Sobic002G042200--Sobic004G202400 Sobic002G042200--Sobic003G157600 Sobic006G251400 Sobic006G251400 Sobic002G042200--Sobic006G251400 Sobic004G209400 Sobic004G209400 Sobic002G042200--Sobic004G209400 Sobic003G404600--Sobic006G059700 Sobic003G404600--Sobic003G366600 Sobic003G404600--Sobic001G147900 Sobic010G185000 Sobic010G185000 Sobic003G404600--Sobic010G185000 Sobic003G404600--Sobic006G197100 Sobic004G227800 Sobic004G227800 Sobic003G404600--Sobic004G227800 Sobic004G024100 Sobic004G024100 Sobic003G404600--Sobic004G024100 Sobic004G348400 Sobic004G348400 Sobic003G404600--Sobic004G348400 Sobic004G349125 Sobic004G349125 Sobic003G404600--Sobic004G349125 Sobic003G368600--Sobic006G197100 Sobic005G107800 Sobic005G107800 Sobic003G368600--Sobic005G107800 Sobic003G368600--Sobic004G348400 Sobic003G368600--Sobic001G147900 Sobic003G368600--Sobic002G042200 Sobic003G011600 Sobic003G011600 Sobic003G368600--Sobic003G011600 Sobic006G243600 Sobic006G243600 Sobic003G368600--Sobic006G243600 Sobic002G003800 Sobic002G003800 Sobic003G368600--Sobic002G003800 Sobic007G030501 Sobic007G030501 Sobic003G368600--Sobic007G030501 Sobic003G157600--Sobic004G202400 Sobic003G157600--Sobic002G042200 Sobic003G157600--Sobic006G197100 Sobic003G184100 Sobic003G184100 Sobic003G157600--Sobic003G184100 Sobic003G384700 Sobic003G384700 Sobic003G157600--Sobic003G384700 Sobic001G416200 Sobic001G416200 Sobic003G157600--Sobic001G416200 Sobic003G157600--Sobic002G261500 Sobic003G157600--Sobic006G122800 Sobic003G157600--Sobic004G349125 Sobic006G157900 Sobic006G157900 Sobic001G328800--Sobic006G157900 Sobic010G270500 Sobic010G270500 Sobic001G328800--Sobic010G270500 Sobic001G328800--Sobic006G260200 Sobic003G311800 Sobic003G311800 Sobic001G328800--Sobic003G311800 Sobic001G328800--Sobic004G262200 Sobic003G007600 Sobic003G007600 Sobic001G328800--Sobic003G007600 Sobic003G299300 Sobic003G299300 Sobic001G328800--Sobic003G299300 Sobic006G235200 Sobic006G235200 Sobic001G328800--Sobic006G235200 Sobic010G270700 Sobic010G270700 Sobic001G328800--Sobic010G270700 Sobic006G256900 Sobic006G256900 Sobic003G152200--Sobic006G256900 Sobic003G152200--Sobic001G147900 Sobic003G152200--Sobic002G042200 Sobic003G152200--Sobic004G024100 Sobic003G152200--Sobic005G065900 Sobic003G152200--Sobic003G404600 Sobic003G015300 Sobic003G015300 Sobic003G152200--Sobic003G015300 Sobic003G152200--Sobic003G368600 Sobic003G152200--Sobic006G243600 Sobic003G366600--Sobic004G348400 Sobic006G044100 Sobic006G044100 Sobic003G366600--Sobic006G044100 Sobic003G366600--Sobic006G157900 Sobic003G366600--Sobic010G185000 Sobic003G366600--Sobic003G404600 Sobic001G481400 Sobic001G481400 Sobic003G366600--Sobic001G481400 Sobic001G403000 Sobic001G403000 Sobic003G366600--Sobic001G403000 Sobic009G072900 Sobic009G072900 Sobic003G366600--Sobic009G072900 Sobic003G366600--Sobic006G059700
Octagon: transcription factors


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