Gene annotation
Transcriptome id Sobic.002G411900.2
Synonym Sb02g042460
Functional annotation SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence. (PubMedID : 27586543)
SRC2 protein, putative, expressed
UniProt A0A1W0W7T0
Pfam PF00168
Panther DB PTHR32246 PTHR32246:SF24
NCBI CDD -
KEGG Orthology -
Gene Ontology GO:0005515; protein binding


Orthologs (automatic annotation)
TAIR AT3G16510 : Calcium-dependent lipid-binding (CaLB domain) family protein
RAP-DB (Rice) LOC_Os01g70790.1 : SRC2 protein, putative, expressed
MaizeGDB (Corn) Zm00025a049117
Brachypodium KQK14718 , KQK14717
Barley HORVU2Hr1G020030.2 , HORVU2Hr1G019990.1 , HORVU2Hr1G020030.1
Wheat TraesCS2B02G135100 , TraesCS2D02G119700 , TraesCS2A02G115400
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.007G178900 CXE carboxylesterase, putative, expressed -
2 Sobic.007G176000 MATE efflux family protein, putative, expressed K03327: TC.MATE, SLC47A, norM, mdtK, multidrug resistance protein, MATE family
3 Sobic.001G128500 LTPL73 - Protease inhibitor/seed storage/LTP family protein precursor, expressed -
4 Sobic.008G106700 isoflavone reductase, putative, expressed -
5 Sobic.003G053400 hydrolase, alpha/beta fold family protein, putative, expressed -
6 Sobic.006G197100 DNA binding protein, putative, expressed -
7 Sobic.006G203700 EF hand family protein, putative, expressed -
8 Sobic.009G109000 expressed protein -
9 Sobic.003G316000 expressed protein -
10 Sobic.001G494000 Expressed in older stem(PubMedID : 28649278)@homeodomain protein, putative, expressed -
11 Sobic.002G003800 plastocyanin-like domain containing protein, putative, expressed -
12 Sobic.007G218800 "caffeoylCoA O-methyltransferase, the MYB transcription factor binding domain AACG element"(PubMedID : 24045932)@SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@ (54% identity with SbCCoAOMT/70.9% similarity)(PubMedID : 27457122)@Functions are not investigated(PubMedID : 29721721)@caffeoyl-CoA O-methyltransferase, putative, expressed K18883: tricin synthase
13 Sobic.006G044100 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@cytochrome P450, putative, expressed -
14 Sobic.004G202400 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@high affinity nitrate transporter, putative, expressed -
15 Sobic.009G088900 membrane associated DUF588 domain containing protein, putative, expressed -
16 Sobic.004G046200 sulfotransferase domain containing protein, expressed -
17 Sobic.004G042000 apoptosis-inducing factor 2, putative, expressed -
18 Sobic.002G365550 - -
19 Sobic.009G187200 UDP-glucoronosyl and UDP-glucosyl transferase domain containing protein, expressed -
20 Sobic.004G318700 OsSub22 - Putative Subtilisin homologue, expressed -


Gene co-expression network
sample Sobic002G411900 Sobic002G411900 Sobic007G178900 Sobic007G178900 Sobic002G411900--Sobic007G178900 Sobic007G176000 Sobic007G176000 Sobic002G411900--Sobic007G176000 Sobic001G128500 Sobic001G128500 Sobic002G411900--Sobic001G128500 Sobic008G106700 Sobic008G106700 Sobic002G411900--Sobic008G106700 Sobic003G053400 Sobic003G053400 Sobic002G411900--Sobic003G053400 Sobic006G197100 Sobic006G197100 Sobic002G411900--Sobic006G197100 Sobic006G203700 Sobic006G203700 Sobic002G411900--Sobic006G203700 Sobic009G109000 Sobic009G109000 Sobic002G411900--Sobic009G109000 Sobic003G316000 Sobic003G316000 Sobic002G411900--Sobic003G316000 Sobic007G178900--Sobic007G176000 Sobic002G216100 Sobic002G216100 Sobic007G178900--Sobic002G216100 Sobic004G139300 Sobic004G139300 Sobic007G178900--Sobic004G139300 Sobic002G185800 Sobic002G185800 Sobic007G178900--Sobic002G185800 Sobic005G046700 Sobic005G046700 Sobic007G178900--Sobic005G046700 Sobic002G368300 Sobic002G368300 Sobic007G178900--Sobic002G368300 Sobic007G178900--Sobic006G197100 Sobic008G055100 Sobic008G055100 Sobic007G178900--Sobic008G055100 Sobic007G176100 Sobic007G176100 Sobic007G178900--Sobic007G176100 Sobic007G176000--Sobic007G176100 Sobic007G176000--Sobic007G178900 Sobic007G030501 Sobic007G030501 Sobic007G176000--Sobic007G030501 Sobic007G176000--Sobic002G216100 Sobic007G176000--Sobic006G197100 Sobic005G061200 Sobic005G061200 Sobic007G176000--Sobic005G061200 Sobic007G176000--Sobic002G185800 Sobic007G176000--Sobic004G139300 Sobic007G176000--Sobic008G055100 Sobic009G187200 Sobic009G187200 Sobic001G128500--Sobic009G187200 Sobic004G046200 Sobic004G046200 Sobic001G128500--Sobic004G046200 Sobic004G202400 Sobic004G202400 Sobic001G128500--Sobic004G202400 Sobic008G172600 Sobic008G172600 Sobic001G128500--Sobic008G172600 Sobic001G128500--Sobic006G197100 Sobic006G199800 Sobic006G199800 Sobic001G128500--Sobic006G199800 Sobic003G084400 Sobic003G084400 Sobic001G128500--Sobic003G084400 Sobic001G128500--Sobic003G053400 Sobic002G003800 Sobic002G003800 Sobic001G128500--Sobic002G003800 Sobic008G106700--Sobic004G046200 Sobic001G500000 Sobic001G500000 Sobic008G106700--Sobic001G500000 Sobic006G044100 Sobic006G044100 Sobic008G106700--Sobic006G044100 Sobic008G106700--Sobic003G084400 Sobic003G079400 Sobic003G079400 Sobic008G106700--Sobic003G079400 Sobic009G183400 Sobic009G183400 Sobic008G106700--Sobic009G183400 Sobic009G179900 Sobic009G179900 Sobic008G106700--Sobic009G179900 Sobic001G139100 Sobic001G139100 Sobic008G106700--Sobic001G139100 Sobic008G106700--Sobic006G199800 Sobic002G261500 Sobic002G261500 Sobic003G053400--Sobic002G261500 Sobic009G088900 Sobic009G088900 Sobic003G053400--Sobic009G088900 Sobic002G425000 Sobic002G425000 Sobic003G053400--Sobic002G425000 Sobic002G124500 Sobic002G124500 Sobic003G053400--Sobic002G124500 Sobic003G053400--Sobic009G109000 Sobic010G212500 Sobic010G212500 Sobic003G053400--Sobic010G212500 Sobic004G297900 Sobic004G297900 Sobic003G053400--Sobic004G297900 Sobic002G365550 Sobic002G365550 Sobic003G053400--Sobic002G365550 Sobic002G365801 Sobic002G365801 Sobic003G053400--Sobic002G365801 Sobic006G197100--Sobic002G003800 Sobic004G042000 Sobic004G042000 Sobic006G197100--Sobic004G042000 Sobic004G349125 Sobic004G349125 Sobic006G197100--Sobic004G349125 Sobic001G416200 Sobic001G416200 Sobic006G197100--Sobic001G416200 Sobic006G197100--Sobic004G202400 Sobic001G264000 Sobic001G264000 Sobic006G197100--Sobic001G264000 Sobic003G311800 Sobic003G311800 Sobic006G197100--Sobic003G311800 Sobic002G042200 Sobic002G042200 Sobic006G197100--Sobic002G042200 Sobic003G368600 Sobic003G368600 Sobic006G197100--Sobic003G368600 Sobic001G310300 Sobic001G310300 Sobic006G203700--Sobic001G310300 Sobic006G203700--Sobic002G003800 Sobic006G203700--Sobic004G042000 Sobic010G085800 Sobic010G085800 Sobic006G203700--Sobic010G085800 Sobic006G203700--Sobic006G197100 Sobic010G008400 Sobic010G008400 Sobic006G203700--Sobic010G008400 Sobic001G514200 Sobic001G514200 Sobic006G203700--Sobic001G514200 Sobic007G090469 Sobic007G090469 Sobic006G203700--Sobic007G090469 Sobic006G203700--Sobic001G500000 Sobic009G109000--Sobic003G311800 Sobic009G109000--Sobic004G297900 Sobic001G049900 Sobic001G049900 Sobic009G109000--Sobic001G049900 Sobic009G109000--Sobic008G055100 Sobic009G109000--Sobic003G053400 Sobic003G411200 Sobic003G411200 Sobic009G109000--Sobic003G411200 Sobic004G348800 Sobic004G348800 Sobic009G109000--Sobic004G348800 Sobic008G009400 Sobic008G009400 Sobic009G109000--Sobic008G009400 Sobic001G430100 Sobic001G430100 Sobic009G109000--Sobic001G430100 Sobic003G016100 Sobic003G016100 Sobic003G316000--Sobic003G016100 Sobic003G316000--Sobic003G079400 Sobic006G150700 Sobic006G150700 Sobic003G316000--Sobic006G150700 Sobic003G316000--Sobic004G046200 Sobic003G316000--Sobic007G178900 Sobic002G318100 Sobic002G318100 Sobic003G316000--Sobic002G318100 Sobic003G316000--Sobic007G176000 Sobic009G035300 Sobic009G035300 Sobic003G316000--Sobic009G035300 Sobic003G316000--Sobic004G042000
Octagon: transcription factors


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