Gene annotation
Transcriptome id Sobic.003G029400.1
Synonym Sb03g002760
Functional annotation SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence. (PubMedID : 27586543)
avr9/Cf-9 rapidly elicited protein 146, putative, expressed
UniProt C5XLU3
Pfam -
Panther DB PTHR33265 PTHR33265:SF1
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT3G16330 : -
RAP-DB (Rice) LOC_Os01g10180.1 : avr9/Cf-9 rapidly elicited protein 146, putative, expressed
MaizeGDB (Corn) Zm00025a035845 , Zm00025a043147 , Zm00025a022958
Brachypodium KQK03181
Barley HORVU3Hr1G027240.1
Wheat -
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.007G176100 MATE efflux family protein, putative, expressed K03327: TC.MATE, SLC47A, norM, mdtK, multidrug resistance protein, MATE family
2 Sobic.008G048400 citrate-binding protein precursor, putative, expressed -
3 Sobic.008G055100 dirigent, putative, expressed -
4 Sobic.009G181800 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@-(PubMedID : 9484480)@cytochrome P450, putative, expressed K09754: CYP98A, 5-O-(4-coumaroyl)-D-quinate 3'-monooxygenase
5 Sobic.003G039600 expressed protein -
6 Sobic.004G284700 aluminum-activated malate transporter, putative, expressed -
7 Sobic.001G418100 NAD dependent epimerase/dehydratase family domain containing protein, expressed K08678: UXS1, UDP-glucuronate decarboxylase
8 Sobic.008G034700 phytosulfokines precursor, putative, expressed -
9 Sobic.007G006300 expressed protein -
10 Sobic.007G218800 "caffeoylCoA O-methyltransferase, the MYB transcription factor binding domain AACG element"(PubMedID : 24045932)@SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@ (54% identity with SbCCoAOMT/70.9% similarity)(PubMedID : 27457122)@Functions are not investigated(PubMedID : 29721721)@caffeoyl-CoA O-methyltransferase, putative, expressed K18883: tricin synthase
11 Sobic.002G251900 chaperone protein dnaJ 10, putative, expressed -
12 Sobic.010G252500 "domain confirmed by Pfam database, expression supported by NCBI EST database"(PubMedID : 20499123)@"SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@OsSAUR28 - Auxin-responsive SAUR gene family member, expressed K14488: SAUR family protein
13 Sobic.004G212300 determined the crystal structures of SbHCT in its apo-form and ternary complex with shikimate and p-coumaroyl-CoA(PubMedID : 23624856)@"shikimate hydroxycinnamoyl transferase, the MYB transcription factor binding domain AACG element"(PubMedID : 24045932)@SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@transferase family protein, putative, expressed K13065: E2.3.1.133, shikimate O-hydroxycinnamoyltransferase
14 Sobic.010G067400 receptor-like protein kinase precursor, putative, expressed -
15 Sobic.003G343900 expressed protein -
16 Sobic.010G028200 GDP-mannose 4,6 dehydratase 2, putative, expressed K01711: gmd, GDPmannose 4,6-dehydratase
17 Sobic.007G176000 MATE efflux family protein, putative, expressed K03327: TC.MATE, SLC47A, norM, mdtK, multidrug resistance protein, MATE family
18 Sobic.001G084100 UDP-glucose 6-dehydrogenase 5(PubMedID : 26186930)@UDP-glucose 6-dehydrogenase, putative, expressed K00012: UGDH, UDPglucose 6-dehydrogenase
19 Sobic.004G015900 expressed protein -
20 Sobic.010G106500 GDSL-like lipase/acylhydrolase, putative, expressed -


Gene co-expression network
sample Sobic003G029400 Sobic003G029400 Sobic007G176100 Sobic007G176100 Sobic003G029400--Sobic007G176100 Sobic008G048400 Sobic008G048400 Sobic003G029400--Sobic008G048400 Sobic008G055100 Sobic008G055100 Sobic003G029400--Sobic008G055100 Sobic009G181800 Sobic009G181800 Sobic003G029400--Sobic009G181800 Sobic003G039600 Sobic003G039600 Sobic003G029400--Sobic003G039600 Sobic004G284700 Sobic004G284700 Sobic003G029400--Sobic004G284700 Sobic001G418100 Sobic001G418100 Sobic003G029400--Sobic001G418100 Sobic008G034700 Sobic008G034700 Sobic003G029400--Sobic008G034700 Sobic007G006300 Sobic007G006300 Sobic003G029400--Sobic007G006300 Sobic007G176000 Sobic007G176000 Sobic007G176100--Sobic007G176000 Sobic007G030501 Sobic007G030501 Sobic007G176100--Sobic007G030501 Sobic002G185800 Sobic002G185800 Sobic007G176100--Sobic002G185800 Sobic005G046700 Sobic005G046700 Sobic007G176100--Sobic005G046700 Sobic007G176100--Sobic008G048400 Sobic007G178900 Sobic007G178900 Sobic007G176100--Sobic007G178900 Sobic002G216100 Sobic002G216100 Sobic007G176100--Sobic002G216100 Sobic004G139300 Sobic004G139300 Sobic007G176100--Sobic004G139300 Sobic006G197100 Sobic006G197100 Sobic007G176100--Sobic006G197100 Sobic008G048400--Sobic007G176100 Sobic008G048400--Sobic002G216100 Sobic010G096400 Sobic010G096400 Sobic008G048400--Sobic010G096400 Sobic008G048400--Sobic002G185800 Sobic008G048400--Sobic004G139300 Sobic008G048400--Sobic008G034700 Sobic008G048400--Sobic007G176000 Sobic003G269600 Sobic003G269600 Sobic008G048400--Sobic003G269600 Sobic006G183900 Sobic006G183900 Sobic008G048400--Sobic006G183900 Sobic009G088900 Sobic009G088900 Sobic008G055100--Sobic009G088900 Sobic001G514200 Sobic001G514200 Sobic008G055100--Sobic001G514200 Sobic009G109000 Sobic009G109000 Sobic008G055100--Sobic009G109000 Sobic007G218800 Sobic007G218800 Sobic008G055100--Sobic007G218800 Sobic008G055100--Sobic010G096400 Sobic001G049900 Sobic001G049900 Sobic008G055100--Sobic001G049900 Sobic008G055100--Sobic007G176000 Sobic008G055100--Sobic007G178900 Sobic002G154600 Sobic002G154600 Sobic008G055100--Sobic002G154600 Sobic009G181800--Sobic001G418100 Sobic003G219800 Sobic003G219800 Sobic009G181800--Sobic003G219800 Sobic010G252401 Sobic010G252401 Sobic009G181800--Sobic010G252401 Sobic008G186100 Sobic008G186100 Sobic009G181800--Sobic008G186100 Sobic005G113300 Sobic005G113300 Sobic009G181800--Sobic005G113300 Sobic003G027400 Sobic003G027400 Sobic009G181800--Sobic003G027400 Sobic002G393400 Sobic002G393400 Sobic009G181800--Sobic002G393400 Sobic002G250000 Sobic002G250000 Sobic009G181800--Sobic002G250000 Sobic004G310200 Sobic004G310200 Sobic009G181800--Sobic004G310200 Sobic009G002400 Sobic009G002400 Sobic003G039600--Sobic009G002400 Sobic006G274933 Sobic006G274933 Sobic003G039600--Sobic006G274933 Sobic007G149800 Sobic007G149800 Sobic003G039600--Sobic007G149800 Sobic003G411200 Sobic003G411200 Sobic003G039600--Sobic003G411200 Sobic001G238800 Sobic001G238800 Sobic003G039600--Sobic001G238800 Sobic009G106400 Sobic009G106400 Sobic003G039600--Sobic009G106400 Sobic007G090460 Sobic007G090460 Sobic003G039600--Sobic007G090460 Sobic003G039600--Sobic007G218800 Sobic010G088800 Sobic010G088800 Sobic003G039600--Sobic010G088800 Sobic010G064000 Sobic010G064000 Sobic004G284700--Sobic010G064000 Sobic004G284700--Sobic001G238800 Sobic002G368300 Sobic002G368300 Sobic004G284700--Sobic002G368300 Sobic004G284700--Sobic008G055100 Sobic004G284700--Sobic003G029400 Sobic004G284700--Sobic001G049900 Sobic004G145900 Sobic004G145900 Sobic004G284700--Sobic004G145900 Sobic003G311800 Sobic003G311800 Sobic004G284700--Sobic003G311800 Sobic004G229400 Sobic004G229400 Sobic004G284700--Sobic004G229400 Sobic001G418100--Sobic003G219800 Sobic005G112800 Sobic005G112800 Sobic001G418100--Sobic005G112800 Sobic002G396400 Sobic002G396400 Sobic001G418100--Sobic002G396400 Sobic001G418100--Sobic009G181800 Sobic001G418100--Sobic002G154600 Sobic001G418100--Sobic001G514200 Sobic002G128800 Sobic002G128800 Sobic001G418100--Sobic002G128800 Sobic001G475500 Sobic001G475500 Sobic001G418100--Sobic001G475500 Sobic001G418100--Sobic008G055100 Sobic008G034700--Sobic006G183900 Sobic007G109600 Sobic007G109600 Sobic008G034700--Sobic007G109600 Sobic002G365600 Sobic002G365600 Sobic008G034700--Sobic002G365600 Sobic008G034700--Sobic008G048400 Sobic003G269500 Sobic003G269500 Sobic008G034700--Sobic003G269500 Sobic005G041300 Sobic005G041300 Sobic008G034700--Sobic005G041300 Sobic009G073800 Sobic009G073800 Sobic008G034700--Sobic009G073800 Sobic004G126700 Sobic004G126700 Sobic008G034700--Sobic004G126700 Sobic002G365500 Sobic002G365500 Sobic008G034700--Sobic002G365500 Sobic010G198500 Sobic010G198500 Sobic007G006300--Sobic010G198500 Sobic007G147700 Sobic007G147700 Sobic007G006300--Sobic007G147700 Sobic004G086400 Sobic004G086400 Sobic007G006300--Sobic004G086400 Sobic001G195200 Sobic001G195200 Sobic007G006300--Sobic001G195200 Sobic002G234400 Sobic002G234400 Sobic007G006300--Sobic002G234400 Sobic001G190100 Sobic001G190100 Sobic007G006300--Sobic001G190100 Sobic001G397300 Sobic001G397300 Sobic007G006300--Sobic001G397300 Sobic003G148300 Sobic003G148300 Sobic007G006300--Sobic003G148300 Sobic004G108200 Sobic004G108200 Sobic007G006300--Sobic004G108200
Octagon: transcription factors


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