Gene annotation
Transcriptome id Sobic.009G073800.3,Sobic.009G073800.2,Sobic.009G073800.4
Synonym Sb09g006220,
Functional annotation "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence." (PubMedID : 27586543)
Up-reguralion under drought (PubMedID : 24916767)
helix-loop-helix DNA-binding domain containing protein, expressed
UniProt C5YUF5
Pfam PF00010
Panther DB PTHR12565 PTHR12565:SF180
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT5G56960 : basic helix-loop-helix (bHLH) DNA-binding family protein
RAP-DB (Rice) LOC_Os01g09900.1 : helix-loop-helix DNA-binding domain containing protein, expressed
MaizeGDB (Corn) Zm00025a043160
Brachypodium -
Barley -
Wheat -
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.008G034700 phytosulfokines precursor, putative, expressed -
2 Sobic.008G172500 ATCHX, putative, expressed -
3 Sobic.003G269500 "CYP711A family, the cytochrome P450 homepage. Its recombinant protein did not converted CLA to 5DS or 5DS to hydroxylated 5DS."(PubMedID : 33793911)@SbMAX1a (cytochrome P450 711A enzyme in sorghum) synthesized 18-hydroxy-carlactonoic acid (18-hydroxy-CLA) directly from carlactone (CL)(PubMedID : 34970291)@cytochrome P450, putative, expressed -
4 Sobic.002G365600 igA FC receptor precursor, putative, expressed -
5 Sobic.005G066000 glycine-rich cell wall structural protein 2 precursor, putative, expressed -
6 Sobic.002G389100 cytochrome P450 72A1, putative, expressed -
7 Sobic.006G183900 cytochrome P450, putative, expressed -
8 Sobic.006G074200 expressed high in CK60 (an inefficient nitrogen user)(PubMedID : 28697783)@"uncharacterized lipid transporters, up-regulated under drought stress, mapped into a QTL involved in stay green (QSTG18_3)"(PubMedID : 24655390)@LTPL102 - Protease inhibitor/seed storage/LTP family protein precursor, expressed -
9 Sobic.010G067400 receptor-like protein kinase precursor, putative, expressed -
10 Sobic.002G416500 peroxidase precursor, putative, expressed K00430: peroxidase
11 Sobic.001G318000 glutathione S-transferase GSTU6, putative, expressed K00799: GST, glutathione S-transferase
12 Sobic.004G126700 glycosyl hydrolases family 16, putative, expressed K08235: xyloglucan:xyloglucosyl transferase
13 Sobic.010G170300 Os9bglu31 - beta-glucosidase, dhurrinase, similar to G. max hydroxyisourate hydrolase, expressed K01188: beta-glucosidase
14 Sobic.002G365500 igA FC receptor precursor, putative, expressed -
15 Sobic.001G364400 cytochrome P450, putative, expressed -
16 Sobic.008G048400 citrate-binding protein precursor, putative, expressed -
17 Sobic.010G106500 GDSL-like lipase/acylhydrolase, putative, expressed -
18 Sobic.002G185800 transporter, putative, expressed -
19 Sobic.002G416900 peroxidase precursor, putative, expressed K00430: peroxidase
20 Sobic.004G261400 xylem cysteine proteinase 2 precursor, putative, expressed K16290: xylem cysteine proteinase


Gene co-expression network
sample Sobic009G073800 Sobic009G073800 Sobic008G034700 Sobic008G034700 Sobic009G073800--Sobic008G034700 Sobic008G172500 Sobic008G172500 Sobic009G073800--Sobic008G172500 Sobic003G269500 Sobic003G269500 Sobic009G073800--Sobic003G269500 Sobic002G365600 Sobic002G365600 Sobic009G073800--Sobic002G365600 Sobic005G066000 Sobic005G066000 Sobic009G073800--Sobic005G066000 Sobic002G389100 Sobic002G389100 Sobic009G073800--Sobic002G389100 Sobic006G183900 Sobic006G183900 Sobic009G073800--Sobic006G183900 Sobic006G074200 Sobic006G074200 Sobic009G073800--Sobic006G074200 Sobic010G067400 Sobic010G067400 Sobic009G073800--Sobic010G067400 Sobic008G034700--Sobic006G183900 Sobic007G109600 Sobic007G109600 Sobic008G034700--Sobic007G109600 Sobic008G034700--Sobic002G365600 Sobic008G048400 Sobic008G048400 Sobic008G034700--Sobic008G048400 Sobic008G034700--Sobic003G269500 Sobic005G041300 Sobic005G041300 Sobic008G034700--Sobic005G041300 Sobic008G034700--Sobic009G073800 Sobic004G126700 Sobic004G126700 Sobic008G034700--Sobic004G126700 Sobic002G365500 Sobic002G365500 Sobic008G034700--Sobic002G365500 Sobic008G172500--Sobic002G365600 Sobic008G172500--Sobic003G269500 Sobic008G172500--Sobic005G066000 Sobic002G365550 Sobic002G365550 Sobic008G172500--Sobic002G365550 Sobic008G172500--Sobic006G074200 Sobic008G172500--Sobic009G073800 Sobic009G109000 Sobic009G109000 Sobic008G172500--Sobic009G109000 Sobic001G364400 Sobic001G364400 Sobic008G172500--Sobic001G364400 Sobic008G172500--Sobic002G365500 Sobic003G269500--Sobic002G365600 Sobic010G106500 Sobic010G106500 Sobic003G269500--Sobic010G106500 Sobic003G269500--Sobic002G365550 Sobic003G269500--Sobic002G365500 Sobic003G269500--Sobic006G183900 Sobic003G269500--Sobic008G172500 Sobic010G096400 Sobic010G096400 Sobic003G269500--Sobic010G096400 Sobic010G212500 Sobic010G212500 Sobic003G269500--Sobic010G212500 Sobic003G269500--Sobic009G109000 Sobic002G365600--Sobic002G365550 Sobic002G365600--Sobic003G269500 Sobic002G365600--Sobic002G365500 Sobic002G365600--Sobic008G172500 Sobic002G365600--Sobic006G183900 Sobic004G071000 Sobic004G071000 Sobic002G365600--Sobic004G071000 Sobic002G365801 Sobic002G365801 Sobic002G365600--Sobic002G365801 Sobic002G365600--Sobic001G364400 Sobic002G365600--Sobic010G212500 Sobic005G066000--Sobic008G172500 Sobic005G149600 Sobic005G149600 Sobic005G066000--Sobic005G149600 Sobic005G066000--Sobic006G074200 Sobic002G163200 Sobic002G163200 Sobic005G066000--Sobic002G163200 Sobic006G117500 Sobic006G117500 Sobic005G066000--Sobic006G117500 Sobic003G287200 Sobic003G287200 Sobic005G066000--Sobic003G287200 Sobic003G015200 Sobic003G015200 Sobic005G066000--Sobic003G015200 Sobic001G212451 Sobic001G212451 Sobic005G066000--Sobic001G212451 Sobic005G066000--Sobic006G183900 Sobic001G508400 Sobic001G508400 Sobic002G389100--Sobic001G508400 Sobic002G416500 Sobic002G416500 Sobic002G389100--Sobic002G416500 Sobic004G261400 Sobic004G261400 Sobic002G389100--Sobic004G261400 Sobic002G389100--Sobic009G073800 Sobic006G012800 Sobic006G012800 Sobic002G389100--Sobic006G012800 Sobic002G307600 Sobic002G307600 Sobic002G389100--Sobic002G307600 Sobic002G389100--Sobic010G067400 Sobic002G389100--Sobic004G126700 Sobic009G158500 Sobic009G158500 Sobic002G389100--Sobic009G158500 Sobic006G183900--Sobic003G287200 Sobic006G183900--Sobic007G109600 Sobic006G028400 Sobic006G028400 Sobic006G183900--Sobic006G028400 Sobic007G090472 Sobic007G090472 Sobic006G183900--Sobic007G090472 Sobic006G183900--Sobic008G034700 Sobic004G248500 Sobic004G248500 Sobic006G183900--Sobic004G248500 Sobic007G170300 Sobic007G170300 Sobic006G183900--Sobic007G170300 Sobic006G183900--Sobic002G365600 Sobic006G183900--Sobic002G365500 Sobic006G074200--Sobic001G364400 Sobic006G074200--Sobic007G170300 Sobic006G074200--Sobic005G066000 Sobic006G074200--Sobic006G183900 Sobic006G074200--Sobic003G287200 Sobic006G074200--Sobic008G172500 Sobic006G074200--Sobic002G365500 Sobic006G074200--Sobic002G365600 Sobic010G110800 Sobic010G110800 Sobic006G074200--Sobic010G110800 Sobic004G046200 Sobic004G046200 Sobic010G067400--Sobic004G046200 Sobic003G016100 Sobic003G016100 Sobic010G067400--Sobic003G016100 Sobic009G187200 Sobic009G187200 Sobic010G067400--Sobic009G187200 Sobic007G169900 Sobic007G169900 Sobic010G067400--Sobic007G169900 Sobic010G184800 Sobic010G184800 Sobic010G067400--Sobic010G184800 Sobic003G079400 Sobic003G079400 Sobic010G067400--Sobic003G079400 Sobic006G277600 Sobic006G277600 Sobic010G067400--Sobic006G277600 Sobic006G044100 Sobic006G044100 Sobic010G067400--Sobic006G044100 Sobic004G310200 Sobic004G310200 Sobic010G067400--Sobic004G310200
Octagon: transcription factors


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