Gene annotation
Transcriptome id Sobic.004G261400.1
Synonym Sb04g029960, XCP1
Functional annotation xylem cysteine proteinase 2 precursor, putative, expressed
UniProt C5XZW7
Pfam PF08246 PF00112
Panther DB PTHR12411 PTHR12411:SF351
NCBI CDD KOG1542; Cysteine proteinase Cathepsin F
KEGG Orthology K16290; xylem cysteine proteinase
Gene Ontology GO:0008234; cysteine-type peptidase activity GO:0006508proteolysis


Orthologs (automatic annotation)
TAIR AT4G35350 : xylem cysteine peptidase 1
RAP-DB (Rice) LOC_Os02g48450.1 : xylem cysteine proteinase 2 precursor, putative, expressed
MaizeGDB (Corn) Zm00025a021807
Brachypodium -
Barley -
Wheat TraesCS6D02G259900 , TraesCS6D02G259900 , TraesCS6B02G308300 , TraesCS6A02G279500
Populus -


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cDNA sequences
Sobic.004G261400


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G026300 sex determination protein tasselseed-2, putative, expressed -
2 Sobic.002G416900 peroxidase precursor, putative, expressed K00430: peroxidase
3 Sobic.002G389100 cytochrome P450 72A1, putative, expressed -
4 Sobic.002G416500 peroxidase precursor, putative, expressed K00430: peroxidase
5 Sobic.010G271200 expressed protein -
6 Sobic.010G106500 GDSL-like lipase/acylhydrolase, putative, expressed -
7 Sobic.004G034200 STRUBBELIG-RECEPTOR FAMILY 1 precursor, putative, expressed -
8 Sobic.007G109600 expressed protein -
9 Sobic.004G126700 glycosyl hydrolases family 16, putative, expressed K08235: xyloglucan:xyloglucosyl transferase
10 Sobic.007G087600 homeobox domain containing protein, expressed -
11 Sobic.009G122300 white-brown complex homolog protein 16, putative, expressed -
12 Sobic.008G034700 phytosulfokines precursor, putative, expressed -
13 Sobic.002G365500 igA FC receptor precursor, putative, expressed -
14 Sobic.006G074200 expressed high in CK60 (an inefficient nitrogen user)(PubMedID : 28697783)@"uncharacterized lipid transporters, up-regulated under drought stress, mapped into a QTL involved in stay green (QSTG18_3)"(PubMedID : 24655390)@LTPL102 - Protease inhibitor/seed storage/LTP family protein precursor, expressed -
15 Sobic.001G212451 - -
16 Sobic.006G183900 cytochrome P450, putative, expressed -
17 Sobic.003G269500 "CYP711A family, the cytochrome P450 homepage. Its recombinant protein did not converted CLA to 5DS or 5DS to hydroxylated 5DS."(PubMedID : 33793911)@SbMAX1a (cytochrome P450 711A enzyme in sorghum) synthesized 18-hydroxy-carlactonoic acid (18-hydroxy-CLA) directly from carlactone (CL)(PubMedID : 34970291)@cytochrome P450, putative, expressed -
18 Sobic.004G232300 SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@annexin, putative, expressed -
19 Sobic.001G308100 zinc finger, C3HC4 type domain containing protein, expressed -
20 Sobic.005G066000 glycine-rich cell wall structural protein 2 precursor, putative, expressed -


Gene co-expression network
sample Sobic004G261400 Sobic004G261400 Sobic001G026300 Sobic001G026300 Sobic004G261400--Sobic001G026300 Sobic002G416900 Sobic002G416900 Sobic004G261400--Sobic002G416900 Sobic002G389100 Sobic002G389100 Sobic004G261400--Sobic002G389100 Sobic002G416500 Sobic002G416500 Sobic004G261400--Sobic002G416500 Sobic010G271200 Sobic010G271200 Sobic004G261400--Sobic010G271200 Sobic010G106500 Sobic010G106500 Sobic004G261400--Sobic010G106500 Sobic004G034200 Sobic004G034200 Sobic004G261400--Sobic004G034200 Sobic007G109600 Sobic007G109600 Sobic004G261400--Sobic007G109600 Sobic004G126700 Sobic004G126700 Sobic004G261400--Sobic004G126700 Sobic005G149600 Sobic005G149600 Sobic001G026300--Sobic005G149600 Sobic005G089200 Sobic005G089200 Sobic001G026300--Sobic005G089200 Sobic003G015200 Sobic003G015200 Sobic001G026300--Sobic003G015200 Sobic001G026300--Sobic004G034200 Sobic004G108800 Sobic004G108800 Sobic001G026300--Sobic004G108800 Sobic007G156800 Sobic007G156800 Sobic001G026300--Sobic007G156800 Sobic010G170300 Sobic010G170300 Sobic001G026300--Sobic010G170300 Sobic001G026300--Sobic004G126700 Sobic001G464300 Sobic001G464300 Sobic001G026300--Sobic001G464300 Sobic002G416900--Sobic010G106500 Sobic009G106400 Sobic009G106400 Sobic002G416900--Sobic009G106400 Sobic003G016100 Sobic003G016100 Sobic002G416900--Sobic003G016100 Sobic002G416900--Sobic010G271200 Sobic010G067400 Sobic010G067400 Sobic002G416900--Sobic010G067400 Sobic003G360600 Sobic003G360600 Sobic002G416900--Sobic003G360600 Sobic009G187200 Sobic009G187200 Sobic002G416900--Sobic009G187200 Sobic001G318000 Sobic001G318000 Sobic002G416900--Sobic001G318000 Sobic004G349125 Sobic004G349125 Sobic002G416900--Sobic004G349125 Sobic001G508400 Sobic001G508400 Sobic002G389100--Sobic001G508400 Sobic002G389100--Sobic002G416500 Sobic002G389100--Sobic004G261400 Sobic009G073800 Sobic009G073800 Sobic002G389100--Sobic009G073800 Sobic006G012800 Sobic006G012800 Sobic002G389100--Sobic006G012800 Sobic002G307600 Sobic002G307600 Sobic002G389100--Sobic002G307600 Sobic002G389100--Sobic010G067400 Sobic002G389100--Sobic004G126700 Sobic009G158500 Sobic009G158500 Sobic002G389100--Sobic009G158500 Sobic002G416500--Sobic001G508400 Sobic006G181900 Sobic006G181900 Sobic002G416500--Sobic006G181900 Sobic002G416500--Sobic002G389100 Sobic002G416500--Sobic003G015200 Sobic009G006500 Sobic009G006500 Sobic002G416500--Sobic009G006500 Sobic007G058600 Sobic007G058600 Sobic002G416500--Sobic007G058600 Sobic002G416500--Sobic001G026300 Sobic001G452200 Sobic001G452200 Sobic002G416500--Sobic001G452200 Sobic002G416500--Sobic004G261400 Sobic010G271200--Sobic010G106500 Sobic010G271200--Sobic002G416900 Sobic001G264000 Sobic001G264000 Sobic010G271200--Sobic001G264000 Sobic003G269600 Sobic003G269600 Sobic010G271200--Sobic003G269600 Sobic007G087600 Sobic007G087600 Sobic010G271200--Sobic007G087600 Sobic006G183900 Sobic006G183900 Sobic010G271200--Sobic006G183900 Sobic010G271200--Sobic007G109600 Sobic010G271200--Sobic003G360600 Sobic006G028400 Sobic006G028400 Sobic010G271200--Sobic006G028400 Sobic010G106500--Sobic003G360600 Sobic010G106500--Sobic010G271200 Sobic001G238800 Sobic001G238800 Sobic010G106500--Sobic001G238800 Sobic010G106500--Sobic009G106400 Sobic010G106500--Sobic002G416900 Sobic010G106500--Sobic003G269600 Sobic010G106500--Sobic001G318000 Sobic010G106500--Sobic001G264000 Sobic003G093700 Sobic003G093700 Sobic010G106500--Sobic003G093700 Sobic004G034200--Sobic005G089200 Sobic004G034200--Sobic005G149600 Sobic004G034200--Sobic001G026300 Sobic004G034200--Sobic004G108800 Sobic004G034200--Sobic007G156800 Sobic004G034200--Sobic003G015200 Sobic008G091557 Sobic008G091557 Sobic004G034200--Sobic008G091557 Sobic001G131001 Sobic001G131001 Sobic004G034200--Sobic001G131001 Sobic007G038600 Sobic007G038600 Sobic004G034200--Sobic007G038600 Sobic007G109600--Sobic006G183900 Sobic004G248500 Sobic004G248500 Sobic007G109600--Sobic004G248500 Sobic007G109600--Sobic006G028400 Sobic005G097600 Sobic005G097600 Sobic007G109600--Sobic005G097600 Sobic001G212451 Sobic001G212451 Sobic007G109600--Sobic001G212451 Sobic002G365500 Sobic002G365500 Sobic007G109600--Sobic002G365500 Sobic002G365600 Sobic002G365600 Sobic007G109600--Sobic002G365600 Sobic008G034700 Sobic008G034700 Sobic007G109600--Sobic008G034700 Sobic007G109600--Sobic003G269600 Sobic003G287200 Sobic003G287200 Sobic004G126700--Sobic003G287200 Sobic004G126700--Sobic001G026300 Sobic004G126700--Sobic005G089200 Sobic004G126700--Sobic010G170300 Sobic004G126700--Sobic006G183900 Sobic006G229100 Sobic006G229100 Sobic004G126700--Sobic006G229100 Sobic004G126700--Sobic008G034700 Sobic004G126700--Sobic005G149600 Sobic001G108000 Sobic001G108000 Sobic004G126700--Sobic001G108000
Octagon: transcription factors


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