Gene annotation
Transcriptome id Sobic.001G308100.1
Synonym ATL5, Sb01g030040
Functional annotation zinc finger, C3HC4 type domain containing protein, expressed
UniProt C5WTG3
Pfam PF13639
Panther DB PTHR14155 PTHR14155:SF105
NCBI CDD -
KEGG Orthology -
Gene Ontology GO:0008270; zinc ion binding GO:0005515protein binding


Orthologs (automatic annotation)
TAIR AT3G48030 : hypoxia-responsive family protein / zinc finger (C3HC4-type RING finger) family protein
RAP-DB (Rice) LOC_Os10g39936.1 : zinc finger, C3HC4 type domain containing protein, expressed
MaizeGDB (Corn) Zm00025a003245
Brachypodium KQJ97657 , KQJ97656 , KQJ97655
Barley HORVU1Hr1G052700.9 , HORVU1Hr1G052700.2 , HORVU1Hr1G052700.7 , HORVU1Hr1G052700.6
Wheat TraesCS1D02G208400 , TraesCS1A02G205100 , TraesCS1B02G218700
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.003G287200 WRKY23, expressed -
2 Sobic.010G271200 expressed protein -
3 Sobic.009G122300 white-brown complex homolog protein 16, putative, expressed -
4 Sobic.006G183900 cytochrome P450, putative, expressed -
5 Sobic.006G028400 1-aminocyclopropane-1-carboxylate oxidase homolog 2, putative, expressed -
6 Sobic.007G178900 CXE carboxylesterase, putative, expressed -
7 Sobic.003G203600 aldehyde dehydrogenase, putative, expressed K12355: coniferyl-aldehyde dehydrogenase
8 Sobic.007G176000 MATE efflux family protein, putative, expressed K03327: TC.MATE, SLC47A, norM, mdtK, multidrug resistance protein, MATE family
9 Sobic.007G109600 expressed protein -
10 Sobic.010G096400 proteins of unknown function domain containing protein, expressed -
11 Sobic.002G365500 igA FC receptor precursor, putative, expressed -
12 Sobic.006G074200 expressed high in CK60 (an inefficient nitrogen user)(PubMedID : 28697783)@"uncharacterized lipid transporters, up-regulated under drought stress, mapped into a QTL involved in stay green (QSTG18_3)"(PubMedID : 24655390)@LTPL102 - Protease inhibitor/seed storage/LTP family protein precursor, expressed -
13 Sobic.008G055100 dirigent, putative, expressed -
14 Sobic.002G318200 expressed protein -
15 Sobic.008G133000 expressed protein -
16 Sobic.004G248500 GDSL-like lipase/acylhydrolase, putative, expressed -
17 Sobic.007G165400 DNA binding protein, putative, expressed -
18 Sobic.007G170300 beta,beta-carotene 9,10-dioxygenase, putative, expressed K17913: carlactone synthase / all-trans-10'-apo-beta-carotenal 13,14-cleaving dioxygenase
19 Sobic.001G055400 WRKY6, expressed -
20 Sobic.004G126700 glycosyl hydrolases family 16, putative, expressed K08235: xyloglucan:xyloglucosyl transferase


Gene co-expression network
sample Sobic001G308100 Sobic001G308100 Sobic003G287200 Sobic003G287200 Sobic001G308100--Sobic003G287200 Sobic010G271200 Sobic010G271200 Sobic001G308100--Sobic010G271200 Sobic009G122300 Sobic009G122300 Sobic001G308100--Sobic009G122300 Sobic006G183900 Sobic006G183900 Sobic001G308100--Sobic006G183900 Sobic006G028400 Sobic006G028400 Sobic001G308100--Sobic006G028400 Sobic007G178900 Sobic007G178900 Sobic001G308100--Sobic007G178900 Sobic003G203600 Sobic003G203600 Sobic001G308100--Sobic003G203600 Sobic007G176000 Sobic007G176000 Sobic001G308100--Sobic007G176000 Sobic007G109600 Sobic007G109600 Sobic001G308100--Sobic007G109600 Sobic003G287200--Sobic006G183900 Sobic006G229100 Sobic006G229100 Sobic003G287200--Sobic006G229100 Sobic001G002800 Sobic001G002800 Sobic003G287200--Sobic001G002800 Sobic001G360500 Sobic001G360500 Sobic003G287200--Sobic001G360500 Sobic001G503000 Sobic001G503000 Sobic003G287200--Sobic001G503000 Sobic007G090472 Sobic007G090472 Sobic003G287200--Sobic007G090472 Sobic010G096700 Sobic010G096700 Sobic003G287200--Sobic010G096700 Sobic007G170300 Sobic007G170300 Sobic003G287200--Sobic007G170300 Sobic006G117500 Sobic006G117500 Sobic003G287200--Sobic006G117500 Sobic010G106500 Sobic010G106500 Sobic010G271200--Sobic010G106500 Sobic002G416900 Sobic002G416900 Sobic010G271200--Sobic002G416900 Sobic001G264000 Sobic001G264000 Sobic010G271200--Sobic001G264000 Sobic003G269600 Sobic003G269600 Sobic010G271200--Sobic003G269600 Sobic007G087600 Sobic007G087600 Sobic010G271200--Sobic007G087600 Sobic010G271200--Sobic006G183900 Sobic010G271200--Sobic007G109600 Sobic003G360600 Sobic003G360600 Sobic010G271200--Sobic003G360600 Sobic010G271200--Sobic006G028400 Sobic009G122300--Sobic007G109600 Sobic008G133000 Sobic008G133000 Sobic009G122300--Sobic008G133000 Sobic004G248500 Sobic004G248500 Sobic009G122300--Sobic004G248500 Sobic009G122300--Sobic001G308100 Sobic001G055400 Sobic001G055400 Sobic009G122300--Sobic001G055400 Sobic009G122300--Sobic006G183900 Sobic009G122300--Sobic006G028400 Sobic010G096400 Sobic010G096400 Sobic009G122300--Sobic010G096400 Sobic001G263900 Sobic001G263900 Sobic009G122300--Sobic001G263900 Sobic006G183900--Sobic003G287200 Sobic006G183900--Sobic007G109600 Sobic006G183900--Sobic006G028400 Sobic006G183900--Sobic007G090472 Sobic008G034700 Sobic008G034700 Sobic006G183900--Sobic008G034700 Sobic006G183900--Sobic004G248500 Sobic006G183900--Sobic007G170300 Sobic002G365600 Sobic002G365600 Sobic006G183900--Sobic002G365600 Sobic002G365500 Sobic002G365500 Sobic006G183900--Sobic002G365500 Sobic006G028400--Sobic006G183900 Sobic006G028400--Sobic003G203600 Sobic006G028400--Sobic007G170300 Sobic006G028400--Sobic007G109600 Sobic006G028400--Sobic007G178900 Sobic002G185800 Sobic002G185800 Sobic006G028400--Sobic002G185800 Sobic006G028400--Sobic002G365500 Sobic004G071000 Sobic004G071000 Sobic006G028400--Sobic004G071000 Sobic002G365550 Sobic002G365550 Sobic006G028400--Sobic002G365550 Sobic007G178900--Sobic007G176000 Sobic002G216100 Sobic002G216100 Sobic007G178900--Sobic002G216100 Sobic004G139300 Sobic004G139300 Sobic007G178900--Sobic004G139300 Sobic007G178900--Sobic002G185800 Sobic005G046700 Sobic005G046700 Sobic007G178900--Sobic005G046700 Sobic002G368300 Sobic002G368300 Sobic007G178900--Sobic002G368300 Sobic006G197100 Sobic006G197100 Sobic007G178900--Sobic006G197100 Sobic008G055100 Sobic008G055100 Sobic007G178900--Sobic008G055100 Sobic007G176100 Sobic007G176100 Sobic007G178900--Sobic007G176100 Sobic001G067100 Sobic001G067100 Sobic003G203600--Sobic001G067100 Sobic002G195600 Sobic002G195600 Sobic003G203600--Sobic002G195600 Sobic006G135300 Sobic006G135300 Sobic003G203600--Sobic006G135300 Sobic010G082000 Sobic010G082000 Sobic003G203600--Sobic010G082000 Sobic003G426500 Sobic003G426500 Sobic003G203600--Sobic003G426500 Sobic003G203600--Sobic006G028400 Sobic006G092700 Sobic006G092700 Sobic003G203600--Sobic006G092700 Sobic003G203600--Sobic007G170300 Sobic004G038700 Sobic004G038700 Sobic003G203600--Sobic004G038700 Sobic007G176000--Sobic007G176100 Sobic007G176000--Sobic007G178900 Sobic007G030501 Sobic007G030501 Sobic007G176000--Sobic007G030501 Sobic007G176000--Sobic002G216100 Sobic007G176000--Sobic006G197100 Sobic005G061200 Sobic005G061200 Sobic007G176000--Sobic005G061200 Sobic007G176000--Sobic002G185800 Sobic007G176000--Sobic004G139300 Sobic007G176000--Sobic008G055100 Sobic007G109600--Sobic006G183900 Sobic007G109600--Sobic004G248500 Sobic007G109600--Sobic006G028400 Sobic005G097600 Sobic005G097600 Sobic007G109600--Sobic005G097600 Sobic001G212451 Sobic001G212451 Sobic007G109600--Sobic001G212451 Sobic007G109600--Sobic002G365500 Sobic007G109600--Sobic002G365600 Sobic007G109600--Sobic008G034700 Sobic007G109600--Sobic003G269600
Octagon: transcription factors


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