Gene annotation
Transcriptome id Sobic.009G172500.1
Synonym Sb09g023310, PYD4
Functional annotation "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence./late senescence marker (common during developmental, salt-induced, and dark-induced senescence)" (PubMedID : 27586543)
aminotransferase, putative, expressed
UniProt C5YZR0
Pfam PF00202
Panther DB PTHR11986 PTHR11986:SF66
NCBI CDD -
KEGG Orthology K00827; alanine-glyoxylate transaminase / (R)-3-amino-2-methylpropionate-pyruvate transaminase
Gene Ontology GO:0008483; transaminase activity


Orthologs (automatic annotation)
TAIR AT3G08860 : PYRIMIDINE 4
RAP-DB (Rice) LOC_Os05g39770.1 : aminotransferase, putative, expressed
MaizeGDB (Corn) Zm00025a014474 , Zm00025a043973 , Zm00025a043978
Brachypodium KQK05776 , PNT71061
Barley HORVU1Hr1G070220.8 , HORVU1Hr1G070220.1 , HORVU1Hr1G070220.2 , HORVU1Hr1G070220.3 , HORVU1Hr1G070220.4 , HORVU1Hr1G070220.5 , HORVU1Hr1G070220.6 , HORVU1Hr1G070220.7 , HORVU1Hr1G070220.9 , HORVU1Hr1G070220.10
Wheat TraesCS1A02G299100 , TraesCS1D02G292100 , TraesCS1B02G308900
Populus -


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cDNA sequences
Sobic.009G172500


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.006G096400 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@oxidoreductase, aldo/keto reductase family protein, putative, expressed -
2 Sobic.010G016400 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@peroxisomal biogenesis factor 11, putative, expressed -
3 Sobic.010G206000 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@transmembrane amino acid transporter protein, putative, expressed -
4 Sobic.002G322900 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@integral membrane protein DUF6 containing protein, expressed -
5 Sobic.002G381300 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@VQ domain containing protein, putative, expressed -
6 Sobic.009G016800 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@expressed protein -
7 Sobic.005G139400 SNARE associated Golgi protein, putative, expressed -
8 Sobic.002G024100 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@lectin-like receptor kinase, putative, expressed -
9 Sobic.009G161401 - -
10 Sobic.004G246200 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@dihydroorotate dihydrogenase protein, putative, expressed K00207: dihydropyrimidine dehydrogenase (NADP+)
11 Sobic.005G152200 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence./late senescence marker during developmental senescence(PubMedID : 27586543)@aminotransferase, classes I and II, domain containing protein, expressed K00815: tyrosine aminotransferase
12 Sobic.009G167700 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@NLI interacting factor-like phosphatase, putative, expressed K15731: carboxy-terminal domain RNA polymerase II polypeptide A small phosphatase
13 Sobic.003G280900 NADP-malic enzyme(PubMedID : 26904072)@NADP-dependent malic enzyme(PubMedID : 27016024)@NADP-dependent malic enzyme, putative, expressed K00029: E1.1.1.40, malate dehydrogenase (oxaloacetate-decarboxylating)(NADP+)
14 Sobic.004G341200 Glutathione reductases(PubMedID : 23783412)@glutathione reductase, putative, expressed K00383: GSR, glutathione reductase (NADPH)
15 Sobic.002G155400 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@serine/threonine-protein kinase BRI1-like 1 precursor, putative, expressed -
16 Sobic.003G229200 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@cytochrome P450 72A1, putative, expressed K07424: cytochrome P450 family 3 subfamily A
17 Sobic.001G026900 cytidine deaminase, putative, expressed -
18 Sobic.006G119200 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@copper methylamine oxidase precursor, putative, expressed K00276: AOC3, AOC2, primary-amine oxidase
19 Sobic.003G338400 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@serine/threonine-protein kinase NAK, putative, expressed -
20 Sobic.001G512800 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@aconitate hydratase protein, putative, expressed K01681: ACO, aconitate hydratase


Gene co-expression network
sample Sobic009G172500 Sobic009G172500 Sobic006G096400 Sobic006G096400 Sobic009G172500--Sobic006G096400 Sobic010G016400 Sobic010G016400 Sobic009G172500--Sobic010G016400 Sobic010G206000 Sobic010G206000 Sobic009G172500--Sobic010G206000 Sobic002G322900 Sobic002G322900 Sobic009G172500--Sobic002G322900 Sobic002G381300 Sobic002G381300 Sobic009G172500--Sobic002G381300 Sobic009G016800 Sobic009G016800 Sobic009G172500--Sobic009G016800 Sobic005G139400 Sobic005G139400 Sobic009G172500--Sobic005G139400 Sobic002G024100 Sobic002G024100 Sobic009G172500--Sobic002G024100 Sobic009G161401 Sobic009G161401 Sobic009G172500--Sobic009G161401 Sobic006G096400--Sobic009G172500 Sobic006G096400--Sobic010G016400 Sobic008G179500 Sobic008G179500 Sobic006G096400--Sobic008G179500 Sobic001G026900 Sobic001G026900 Sobic006G096400--Sobic001G026900 Sobic001G010400 Sobic001G010400 Sobic006G096400--Sobic001G010400 Sobic006G096400--Sobic002G381300 Sobic006G096400--Sobic002G024100 Sobic009G111600 Sobic009G111600 Sobic006G096400--Sobic009G111600 Sobic003G229200 Sobic003G229200 Sobic006G096400--Sobic003G229200 Sobic010G016400--Sobic005G139400 Sobic009G167700 Sobic009G167700 Sobic010G016400--Sobic009G167700 Sobic004G347300 Sobic004G347300 Sobic010G016400--Sobic004G347300 Sobic006G119200 Sobic006G119200 Sobic010G016400--Sobic006G119200 Sobic007G148800 Sobic007G148800 Sobic010G016400--Sobic007G148800 Sobic006G217700 Sobic006G217700 Sobic010G016400--Sobic006G217700 Sobic010G016400--Sobic001G010400 Sobic004G102400 Sobic004G102400 Sobic010G016400--Sobic004G102400 Sobic010G016400--Sobic009G172500 Sobic001G512800 Sobic001G512800 Sobic010G206000--Sobic001G512800 Sobic004G246200 Sobic004G246200 Sobic010G206000--Sobic004G246200 Sobic001G488500 Sobic001G488500 Sobic010G206000--Sobic001G488500 Sobic010G206000--Sobic002G322900 Sobic001G305800 Sobic001G305800 Sobic010G206000--Sobic001G305800 Sobic002G155400 Sobic002G155400 Sobic010G206000--Sobic002G155400 Sobic001G412700 Sobic001G412700 Sobic010G206000--Sobic001G412700 Sobic004G255000 Sobic004G255000 Sobic010G206000--Sobic004G255000 Sobic005G018500 Sobic005G018500 Sobic010G206000--Sobic005G018500 Sobic004G236600 Sobic004G236600 Sobic002G322900--Sobic004G236600 Sobic005G152100 Sobic005G152100 Sobic002G322900--Sobic005G152100 Sobic002G322900--Sobic004G246200 Sobic002G322900--Sobic001G512800 Sobic002G322900--Sobic001G412700 Sobic004G341200 Sobic004G341200 Sobic002G322900--Sobic004G341200 Sobic002G322900--Sobic004G255000 Sobic002G322900--Sobic001G488500 Sobic002G322900--Sobic010G206000 Sobic005G215900 Sobic005G215900 Sobic002G381300--Sobic005G215900 Sobic005G016800 Sobic005G016800 Sobic002G381300--Sobic005G016800 Sobic009G236200 Sobic009G236200 Sobic002G381300--Sobic009G236200 Sobic002G381300--Sobic009G016800 Sobic002G381300--Sobic006G096400 Sobic002G381300--Sobic009G172500 Sobic001G151800 Sobic001G151800 Sobic002G381300--Sobic001G151800 Sobic001G156300 Sobic001G156300 Sobic002G381300--Sobic001G156300 Sobic004G185900 Sobic004G185900 Sobic002G381300--Sobic004G185900 Sobic009G016800--Sobic009G236200 Sobic009G016800--Sobic005G215900 Sobic009G016800--Sobic002G381300 Sobic009G016800--Sobic010G016400 Sobic002G249000 Sobic002G249000 Sobic009G016800--Sobic002G249000 Sobic003G085300 Sobic003G085300 Sobic009G016800--Sobic003G085300 Sobic006G140000 Sobic006G140000 Sobic009G016800--Sobic006G140000 Sobic003G061400 Sobic003G061400 Sobic009G016800--Sobic003G061400 Sobic009G016800--Sobic001G151800 Sobic005G139400--Sobic010G016400 Sobic005G139400--Sobic004G347300 Sobic006G232000 Sobic006G232000 Sobic005G139400--Sobic006G232000 Sobic005G139400--Sobic001G010400 Sobic006G192700 Sobic006G192700 Sobic005G139400--Sobic006G192700 Sobic002G113800 Sobic002G113800 Sobic005G139400--Sobic002G113800 Sobic001G132000 Sobic001G132000 Sobic005G139400--Sobic001G132000 Sobic005G139400--Sobic007G148800 Sobic005G139400--Sobic004G185900 Sobic005G152200 Sobic005G152200 Sobic002G024100--Sobic005G152200 Sobic001G386400 Sobic001G386400 Sobic002G024100--Sobic001G386400 Sobic003G280900 Sobic003G280900 Sobic002G024100--Sobic003G280900 Sobic002G024100--Sobic006G096400 Sobic002G242500 Sobic002G242500 Sobic002G024100--Sobic002G242500 Sobic002G024100--Sobic003G229200 Sobic002G024100--Sobic010G016400 Sobic002G024100--Sobic009G167700 Sobic002G024100--Sobic009G172500 Sobic009G161401--Sobic003G229200 Sobic009G161401--Sobic002G155400 Sobic001G302500 Sobic001G302500 Sobic009G161401--Sobic001G302500 Sobic009G161401--Sobic009G172500 Sobic009G161401--Sobic002G024100 Sobic004G311000 Sobic004G311000 Sobic009G161401--Sobic004G311000 Sobic003G080900 Sobic003G080900 Sobic009G161401--Sobic003G080900 Sobic003G273700 Sobic003G273700 Sobic009G161401--Sobic003G273700 Sobic004G074500 Sobic004G074500 Sobic009G161401--Sobic004G074500
Octagon: transcription factors


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