Gene annotation
Transcriptome id Sobic.003G280900.1,Sobic.003G280900.2
Synonym ATNADP-ME2, NADP-ME2, NADP-ME;NADP-ME2/3/4, Sb03g033250
Functional annotation NADP-malic enzyme (PubMedID : 26904072)
NADP-dependent malic enzyme (PubMedID : 27016024)
NADP-dependent malic enzyme, putative, expressed
UniProt A0A1B6Q5U2 , A0A1B6Q5U5
Pfam PF00390 PF03949
Panther DB PTHR23406 PTHR23406:SF11
NCBI CDD -
KEGG Orthology K00029; E1.1.1.40, malate dehydrogenase (oxaloacetate-decarboxylating)(NADP+)
Gene Ontology GO:0004471; malate dehydrogenase (decarboxylating) (NAD+) activity


Orthologs (automatic annotation)
TAIR AT5G25880 : NADP-malic enzyme 3
RAP-DB (Rice) LOC_Os01g52500.4,LOC_Os01g52500.3 : NADP-dependent malic enzyme, putative, expressed
MaizeGDB (Corn) Zm00025a027741 , Zm00025a023397 , Zm00025a048274
Brachypodium PNT72746 , KQK09534 , KQK09535 , KQK09533 , KQK07158 , KQK09685
Barley HORVU1Hr1G028030.30 , HORVU3Hr1G068600.32 , HORVU3Hr1G068600.31 , HORVU3Hr1G068600.30 , HORVU3Hr1G068600.28 , HORVU3Hr1G068600.29 , HORVU3Hr1G068600.20 , HORVU3Hr1G068600.21 , HORVU3Hr1G068600.22 , HORVU3Hr1G068600.23 , HORVU3Hr1G068600.24 , HORVU3Hr1G068600.25 , HORVU3Hr1G068600.26 , HORVU3Hr1G068600.27 , HORVU3Hr1G068600.19 , HORVU3Hr1G068600.15 , HORVU3Hr1G068600.14 , HORVU3Hr1G068600.17 , HORVU3Hr1G068600.16 , HORVU3Hr1G068600.11 , HORVU3Hr1G068600.10 , HORVU3Hr1G068600.13 , HORVU3Hr1G068600.12 , HORVU1Hr1G028030.8 , HORVU1Hr1G028030.3 , HORVU1Hr1G028030.4 , HORVU1Hr1G028030.5 , HORVU1Hr1G028030.6 , HORVU1Hr1G028030.7 , HORVU1Hr1G028030.13 , HORVU1Hr1G028030.16 , HORVU1Hr1G028030.17 , HORVU1Hr1G028030.14 , HORVU1Hr1G028030.15 , HORVU1Hr1G028030.18 , HORVU1Hr1G028030.19 , HORVU3Hr1G068600.9 , HORVU3Hr1G068600.8 , HORVU3Hr1G068600.1 , HORVU3Hr1G068600.3 , HORVU3Hr1G068600.2 , HORVU3Hr1G068600.5 , HORVU3Hr1G068600.4 , HORVU3Hr1G068600.7 , HORVU3Hr1G068600.6 , HORVU1Hr1G028030.29 , HORVU1Hr1G028030.28 , HORVU3Hr1G070850.1 , HORVU3Hr1G070850.3 , HORVU3Hr1G070850.2 , HORVU1Hr1G028030.27 , HORVU3Hr1G068600.18
Wheat TraesCS3B02G309300 , TraesCS3A02G275600 , TraesCS3B02G320200 , TraesCS3B02G320200 , TraesCS3B02G320200 , TraesCS3B02G320200 , TraesCS3B02G320200 , TraesCS3D02G285700 , TraesCS3D02G285700 , TraesCS3D02G285700 , TraesCS3D02G275500 , TraesCS3A02G285900 , TraesCS3A02G285900
Populus PNS93421 , PNS93420 , PNS93422 , PNS93418 , PNS93419 , PNS93417


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cDNA sequences
Sobic.003G280900


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.002G249000 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@AT hook motif domain containing protein, expressed -
2 Sobic.003G333400 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@expressed protein -
3 Sobic.001G010400 snRK1-interacting protein 1, putative, expressed -
4 Sobic.004G276100 expressed protein -
5 Sobic.004G050000 ubiquitin family protein, putative, expressed K08770: ubiquitin C
K08770: ubiquitin C
K04551: ubiquitin B
6 Sobic.007G195100 peptidase, T1 family, putative, expressed K02732: 20S proteasome subunit beta 6
7 Sobic.001G026900 cytidine deaminase, putative, expressed -
8 Sobic.005G117400 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@transcription factor(PubMedID : 30367619)@WRKY72, expressed -
9 Sobic.002G090200 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence./middle senescence marker (common during developmental, salt-induced, and dark-induced senescence)"(PubMedID : 27586543)@cytidine deaminase, putative, expressed -
10 Sobic.002G024100 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@lectin-like receptor kinase, putative, expressed -
11 Sobic.002G180600 expressed protein K17968: TRIAP1, TRIAP1/MDM35 family protein
12 Sobic.006G165400 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence./middle senescence marker (common during developmental, salt-induced, and dark-induced senescence)"(PubMedID : 27586543)@glutamate dehydrogenase protein, putative, expressed K00261: GLUD1_2, glutamate dehydrogenase (NAD(P)+)
13 Sobic.010G016400 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@peroxisomal biogenesis factor 11, putative, expressed -
14 Sobic.009G043600 glutathione S-transferase, putative, expressed K00799: GST, glutathione S-transferase
15 Sobic.004G185900 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@galactosyltransferase, putative, expressed -
16 Sobic.003G338400 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@serine/threonine-protein kinase NAK, putative, expressed -
17 Sobic.007G078100 UPF0041 domain containing protein, putative, expressed -
18 Sobic.008G062601 - -
19 Sobic.008G179500 SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@heavy metal-associated domain containing protein, expressed K07213: ATOX1, ATX1, copZ, copper chaperone
20 Sobic.001G401300 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@PR10(PubMedID : 20078779)@accumulation during fungal development(PubMedID : 10356799)@pathogenesis-related Bet v I family protein, putative, expressed -


Gene co-expression network
sample Sobic003G280900 Sobic003G280900 Sobic002G249000 Sobic002G249000 Sobic003G280900--Sobic002G249000 Sobic003G333400 Sobic003G333400 Sobic003G280900--Sobic003G333400 Sobic001G010400 Sobic001G010400 Sobic003G280900--Sobic001G010400 Sobic004G276100 Sobic004G276100 Sobic003G280900--Sobic004G276100 Sobic004G050000 Sobic004G050000 Sobic003G280900--Sobic004G050000 Sobic007G195100 Sobic007G195100 Sobic003G280900--Sobic007G195100 Sobic001G026900 Sobic001G026900 Sobic003G280900--Sobic001G026900 Sobic005G117400 Sobic005G117400 Sobic003G280900--Sobic005G117400 Sobic002G090200 Sobic002G090200 Sobic003G280900--Sobic002G090200 Sobic004G277000 Sobic004G277000 Sobic002G249000--Sobic004G277000 Sobic002G249000--Sobic001G010400 Sobic002G249000--Sobic004G050000 Sobic009G003900 Sobic009G003900 Sobic002G249000--Sobic009G003900 Sobic010G224200 Sobic010G224200 Sobic002G249000--Sobic010G224200 Sobic002G249000--Sobic005G117400 Sobic010G176700 Sobic010G176700 Sobic002G249000--Sobic010G176700 Sobic002G180600 Sobic002G180600 Sobic002G249000--Sobic002G180600 Sobic004G307000 Sobic004G307000 Sobic002G249000--Sobic004G307000 Sobic003G333400--Sobic007G195100 Sobic009G146100 Sobic009G146100 Sobic003G333400--Sobic009G146100 Sobic003G333400--Sobic002G180600 Sobic008G179500 Sobic008G179500 Sobic003G333400--Sobic008G179500 Sobic003G333400--Sobic004G276100 Sobic003G333400--Sobic004G277000 Sobic003G333400--Sobic002G249000 Sobic003G333400--Sobic004G050000 Sobic003G253000 Sobic003G253000 Sobic003G333400--Sobic003G253000 Sobic001G010400--Sobic002G249000 Sobic007G148800 Sobic007G148800 Sobic001G010400--Sobic007G148800 Sobic004G185900 Sobic004G185900 Sobic001G010400--Sobic004G185900 Sobic002G113800 Sobic002G113800 Sobic001G010400--Sobic002G113800 Sobic001G393800 Sobic001G393800 Sobic001G010400--Sobic001G393800 Sobic002G258100 Sobic002G258100 Sobic001G010400--Sobic002G258100 Sobic001G010400--Sobic002G180600 Sobic008G107500 Sobic008G107500 Sobic001G010400--Sobic008G107500 Sobic010G016400 Sobic010G016400 Sobic001G010400--Sobic010G016400 Sobic004G276100--Sobic008G179500 Sobic004G272800 Sobic004G272800 Sobic004G276100--Sobic004G272800 Sobic007G078100 Sobic007G078100 Sobic004G276100--Sobic007G078100 Sobic009G111600 Sobic009G111600 Sobic004G276100--Sobic009G111600 Sobic002G329100 Sobic002G329100 Sobic004G276100--Sobic002G329100 Sobic004G276100--Sobic004G050000 Sobic006G108400 Sobic006G108400 Sobic004G276100--Sobic006G108400 Sobic009G043600 Sobic009G043600 Sobic004G276100--Sobic009G043600 Sobic004G284500 Sobic004G284500 Sobic004G276100--Sobic004G284500 Sobic004G050000--Sobic009G043600 Sobic001G066000 Sobic001G066000 Sobic004G050000--Sobic001G066000 Sobic004G049900 Sobic004G049900 Sobic004G050000--Sobic004G049900 Sobic004G050000--Sobic004G277000 Sobic002G267500 Sobic002G267500 Sobic004G050000--Sobic002G267500 Sobic006G121500 Sobic006G121500 Sobic004G050000--Sobic006G121500 Sobic004G050000--Sobic002G090200 Sobic009G177800 Sobic009G177800 Sobic004G050000--Sobic009G177800 Sobic004G050000--Sobic006G108400 Sobic007G195100--Sobic003G333400 Sobic003G367451 Sobic003G367451 Sobic007G195100--Sobic003G367451 Sobic002G296300 Sobic002G296300 Sobic007G195100--Sobic002G296300 Sobic007G195100--Sobic004G050000 Sobic001G403700 Sobic001G403700 Sobic007G195100--Sobic001G403700 Sobic007G195100--Sobic009G111600 Sobic002G159300 Sobic002G159300 Sobic007G195100--Sobic002G159300 Sobic003G323600 Sobic003G323600 Sobic007G195100--Sobic003G323600 Sobic001G132100 Sobic001G132100 Sobic007G195100--Sobic001G132100 Sobic001G227500 Sobic001G227500 Sobic001G026900--Sobic001G227500 Sobic001G026900--Sobic002G090200 Sobic001G026900--Sobic004G050000 Sobic001G026900--Sobic004G276100 Sobic001G026900--Sobic004G277000 Sobic002G083266 Sobic002G083266 Sobic001G026900--Sobic002G083266 Sobic001G026900--Sobic002G267500 Sobic001G026900--Sobic008G179500 Sobic001G026900--Sobic002G249000 Sobic004G158901 Sobic004G158901 Sobic005G117400--Sobic004G158901 Sobic007G125900 Sobic007G125900 Sobic005G117400--Sobic007G125900 Sobic004G058000 Sobic004G058000 Sobic005G117400--Sobic004G058000 Sobic005G117400--Sobic002G249000 Sobic003G348400 Sobic003G348400 Sobic005G117400--Sobic003G348400 Sobic005G117400--Sobic004G050000 Sobic003G232900 Sobic003G232900 Sobic005G117400--Sobic003G232900 Sobic007G025700 Sobic007G025700 Sobic005G117400--Sobic007G025700 Sobic005G117400--Sobic010G224200 Sobic006G218300 Sobic006G218300 Sobic002G090200--Sobic006G218300 Sobic002G090200--Sobic004G050000 Sobic004G074500 Sobic004G074500 Sobic002G090200--Sobic004G074500 Sobic006G165400 Sobic006G165400 Sobic002G090200--Sobic006G165400 Sobic002G090200--Sobic001G026900 Sobic004G308000 Sobic004G308000 Sobic002G090200--Sobic004G308000 Sobic002G090200--Sobic004G277000 Sobic003G215800 Sobic003G215800 Sobic002G090200--Sobic003G215800 Sobic002G090200--Sobic002G249000
Octagon: transcription factors


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