Gene annotation
Transcriptome id Sobic.001G401300.1
Synonym PR-10 homolog;pathogenesis-related proteins, RCAR6, SbPR-10, Sb01g037970, PYL12
Functional annotation SAG (Senescence-associated gene): differentially expressed gene during developmental senescence. (PubMedID : 27586543)
PR10 (PubMedID : 20078779)
accumulation during fungal development (PubMedID : 10356799)
pathogenesis-related Bet v I family protein, putative, expressed
UniProt Q41298 , Q4VQB2
Pfam PF00407
Panther DB PTHR31213 PTHR31213:SF20
NCBI CDD -
KEGG Orthology -
Gene Ontology GO:0009607; response to biotic stimulus GO:0006952defense response


Orthologs (automatic annotation)
TAIR AT5G45870 : PYR1-like 12
RAP-DB (Rice) LOC_Os03g18850.1 : pathogenesis-related Bet v I family protein, putative, expressed
MaizeGDB (Corn) Zm00025a002072 , Zm00025a002073 , Zm00025a002074
Brachypodium KQK22066
Barley HORVU7Hr1G034270.1 , HORVU7Hr1G034260.1 , HORVU4Hr1G054870.3 , HORVU4Hr1G054870.6 , HORVU4Hr1G054870.7 , HORVU4Hr1G054870.4 , HORVU4Hr1G054870.5
Wheat TraesCS4A02G116400 , TraesCS2B02G442700 , TraesCS2D02G317800 , TraesCS2B02G500200 , TraesCS4B02G187800 , TraesCS2A02G423300 , TraesCS7D02G164500 , TraesCS2B02G500100 , TraesCS4D02G189200 , TraesCS4D02G189200 , TraesCS7A02G162600 , TraesCS2D02G420900 , TraesCS2D02G476400 , TraesCS1B02G115600 , TraesCS2B02G500300
Populus -


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cDNA sequences
Sobic.001G401300


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G401200 pathogenesis-related Bet v I family protein, putative, expressed -
2 Sobic.001G400700 pathogenesis-related Bet v I family protein, putative, expressed -
3 Sobic.008G034500 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@phytosulfokines precursor, putative, expressed -
4 Sobic.003G215800 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@pleiotropic drug resistance protein, putative, expressed -
5 Sobic.002G333900 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@CSLF4 - cellulose synthase-like family F@ beta1,3@1,4 glucan synthase, expressed -
6 Sobic.008G191600 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@vesicle-associated membrane protein, putative, expressed -
7 Sobic.001G247900 "Protein chitinase 2, putative, (Os)"(PubMedID : 27208977)@chitinase 2, putative, expressed -
8 Sobic.006G039700 expressed protein -
9 Sobic.009G043600 glutathione S-transferase, putative, expressed K00799: GST, glutathione S-transferase
10 Sobic.003G152100 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@peroxidase precursor, putative, expressed -
11 Sobic.002G249000 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@AT hook motif domain containing protein, expressed -
12 Sobic.001G400800 pathogenesis-related Bet v I family protein, putative, expressed -
13 Sobic.004G277000 purine permease, putative, expressed -
14 Sobic.010G004200 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@integral membrane protein DUF6 domain containing protein, expressed -
15 Sobic.005G136300 chalcone synthase(PubMedID : 26317421)@only inducible by pathogen inoculation(PubMedID : 20529887)@SbCHS1 to SbCHS7 (AF152548-AF152554) are highly conserved (at least 97.5% sequence identity at amino acid level) and closely related to the maize (Zea mays) C2 and Whp genes encoding CHS enzymes.(PubMedID : 15821144)@chalcone synthase, putative, expressed K00660: chalcone synthase
16 Sobic.004G050000 ubiquitin family protein, putative, expressed K08770: ubiquitin C
K08770: ubiquitin C
K04551: ubiquitin B
17 Sobic.003G349600 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@ZOS1-14 - C2H2 zinc finger protein, expressed -
18 Sobic.004G276100 expressed protein -
19 Sobic.005G137200 only inducible by pathogen inoculation(PubMedID : 20529887)@Chalcone synthase 7 (Os)(PubMedID : 27208977)@SbCHS1 to SbCHS7 (AF152548-AF152554) are highly conserved (at least 97.5% sequence identity at amino acid level) and closely related to the maize (Zea mays) C2 and Whp genes encoding CHS enzymes.(PubMedID : 15821144)@chalcone synthase, putative, expressed K00660: chalcone synthase
20 Sobic.004G245800 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@expressed protein -


Gene co-expression network
sample Sobic001G401300 Sobic001G401300 Sobic001G401200 Sobic001G401200 Sobic001G401300--Sobic001G401200 Sobic001G400700 Sobic001G400700 Sobic001G401300--Sobic001G400700 Sobic008G034500 Sobic008G034500 Sobic001G401300--Sobic008G034500 Sobic003G215800 Sobic003G215800 Sobic001G401300--Sobic003G215800 Sobic002G333900 Sobic002G333900 Sobic001G401300--Sobic002G333900 Sobic008G191600 Sobic008G191600 Sobic001G401300--Sobic008G191600 Sobic001G247900 Sobic001G247900 Sobic001G401300--Sobic001G247900 Sobic006G039700 Sobic006G039700 Sobic001G401300--Sobic006G039700 Sobic009G043600 Sobic009G043600 Sobic001G401300--Sobic009G043600 Sobic001G401200--Sobic001G400700 Sobic001G401200--Sobic001G401300 Sobic001G400800 Sobic001G400800 Sobic001G401200--Sobic001G400800 Sobic004G245800 Sobic004G245800 Sobic001G401200--Sobic004G245800 Sobic001G401200--Sobic009G043600 Sobic006G106800 Sobic006G106800 Sobic001G401200--Sobic006G106800 Sobic002G353900 Sobic002G353900 Sobic001G401200--Sobic002G353900 Sobic001G401100 Sobic001G401100 Sobic001G401200--Sobic001G401100 Sobic002G367400 Sobic002G367400 Sobic001G401200--Sobic002G367400 Sobic001G400700--Sobic001G400800 Sobic005G101800 Sobic005G101800 Sobic001G400700--Sobic005G101800 Sobic001G400700--Sobic004G245800 Sobic003G286600 Sobic003G286600 Sobic001G400700--Sobic003G286600 Sobic001G177800 Sobic001G177800 Sobic001G400700--Sobic001G177800 Sobic010G176600 Sobic010G176600 Sobic001G400700--Sobic010G176600 Sobic003G252800 Sobic003G252800 Sobic001G400700--Sobic003G252800 Sobic002G183200 Sobic002G183200 Sobic001G400700--Sobic002G183200 Sobic006G099900 Sobic006G099900 Sobic001G400700--Sobic006G099900 Sobic008G034500--Sobic001G401300 Sobic003G152100 Sobic003G152100 Sobic008G034500--Sobic003G152100 Sobic008G034500--Sobic002G367400 Sobic008G034500--Sobic002G333900 Sobic008G034500--Sobic001G400700 Sobic001G466000 Sobic001G466000 Sobic008G034500--Sobic001G466000 Sobic002G328300 Sobic002G328300 Sobic008G034500--Sobic002G328300 Sobic003G349600 Sobic003G349600 Sobic008G034500--Sobic003G349600 Sobic009G143400 Sobic009G143400 Sobic008G034500--Sobic009G143400 Sobic003G215800--Sobic001G401300 Sobic005G137200 Sobic005G137200 Sobic003G215800--Sobic005G137200 Sobic002G090200 Sobic002G090200 Sobic003G215800--Sobic002G090200 Sobic001G454100 Sobic001G454100 Sobic003G215800--Sobic001G454100 Sobic003G215800--Sobic008G034500 Sobic003G215800--Sobic001G466000 Sobic010G107100 Sobic010G107100 Sobic003G215800--Sobic010G107100 Sobic004G058000 Sobic004G058000 Sobic003G215800--Sobic004G058000 Sobic010G004200 Sobic010G004200 Sobic003G215800--Sobic010G004200 Sobic002G333900--Sobic001G401300 Sobic002G333900--Sobic008G034500 Sobic002G333900--Sobic001G247900 Sobic006G196200 Sobic006G196200 Sobic002G333900--Sobic006G196200 Sobic002G333900--Sobic003G152100 Sobic002G333900--Sobic001G466000 Sobic002G333900--Sobic001G400700 Sobic002G333900--Sobic002G328300 Sobic002G333900--Sobic001G401200 Sobic001G050100 Sobic001G050100 Sobic008G191600--Sobic001G050100 Sobic003G192100 Sobic003G192100 Sobic008G191600--Sobic003G192100 Sobic008G032100 Sobic008G032100 Sobic008G191600--Sobic008G032100 Sobic002G312900 Sobic002G312900 Sobic008G191600--Sobic002G312900 Sobic008G191600--Sobic001G400700 Sobic008G191600--Sobic001G247900 Sobic007G151300 Sobic007G151300 Sobic008G191600--Sobic007G151300 Sobic004G101300 Sobic004G101300 Sobic008G191600--Sobic004G101300 Sobic010G270500 Sobic010G270500 Sobic008G191600--Sobic010G270500 Sobic001G247900--Sobic008G191600 Sobic001G247900--Sobic001G401300 Sobic001G247900--Sobic001G400700 Sobic001G247900--Sobic001G400800 Sobic001G247900--Sobic002G333900 Sobic001G247900--Sobic003G152100 Sobic009G072900 Sobic009G072900 Sobic001G247900--Sobic009G072900 Sobic006G243600 Sobic006G243600 Sobic001G247900--Sobic006G243600 Sobic001G192200 Sobic001G192200 Sobic001G247900--Sobic001G192200 Sobic006G039700--Sobic001G400700 Sobic006G039700--Sobic004G245800 Sobic006G039700--Sobic001G400800 Sobic001G444400 Sobic001G444400 Sobic006G039700--Sobic001G444400 Sobic001G100700 Sobic001G100700 Sobic006G039700--Sobic001G100700 Sobic006G039700--Sobic002G183200 Sobic006G039700--Sobic001G401300 Sobic006G039700--Sobic005G101800 Sobic009G106800 Sobic009G106800 Sobic006G039700--Sobic009G106800 Sobic004G050000 Sobic004G050000 Sobic009G043600--Sobic004G050000 Sobic001G066000 Sobic001G066000 Sobic009G043600--Sobic001G066000 Sobic004G277000 Sobic004G277000 Sobic009G043600--Sobic004G277000 Sobic006G121500 Sobic006G121500 Sobic009G043600--Sobic006G121500 Sobic006G199100 Sobic006G199100 Sobic009G043600--Sobic006G199100 Sobic006G108400 Sobic006G108400 Sobic009G043600--Sobic006G108400 Sobic004G276100 Sobic004G276100 Sobic009G043600--Sobic004G276100 Sobic002G267500 Sobic002G267500 Sobic009G043600--Sobic002G267500 Sobic009G043600--Sobic001G400700
Octagon: transcription factors


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