Gene annotation
Transcriptome id Sobic.005G137200.1
Synonym SbCHS7;chalcone synthase (CHS)-like gene 7, Chalcone synthase, TT4, SbCHS7;Chalcone synthase, SbCHS7, Sb05g020220, ATCHS, CHS
Functional annotation only inducible by pathogen inoculation (PubMedID : 20529887)
Chalcone synthase 7 (Os) (PubMedID : 27208977)
SbCHS1 to SbCHS7 (AF152548-AF152554) are highly conserved (at least 97.5% sequence identity at amino acid level) and closely related to the maize (Zea mays) C2 and Whp genes encoding CHS enzymes. (PubMedID : 15821144)
chalcone synthase, putative, expressed
UniProt C5Y3Q2 , Q9XGX1
Pfam PF08541 PF00195
Panther DB PTHR11877 PTHR11877:SF27
NCBI CDD -
KEGG Orthology K00660; chalcone synthase
Gene Ontology GO:0016747; transferase activity, transferring acyl groups other than amino-acyl groups GO:0008610lipid biosynthetic process


Orthologs (automatic annotation)
TAIR AT5G13930 : Chalcone and stilbene synthase family protein
RAP-DB (Rice) LOC_Os11g32650.1 : chalcone synthase, putative, expressed
MaizeGDB (Corn) Zm00025a015696 , Zm00025a033582
Brachypodium KQJ88357
Barley HORVU2Hr1G005220.3 , HORVU2Hr1G005220.2 , HORVU2Hr1G005220.5 , HORVU2Hr1G005220.4 , HORVU2Hr1G004170.1 , HORVU2Hr1G004170.2 , HORVU2Hr1G004170.3 , HORVU2Hr1G004170.4 , HORVU2Hr1G004170.5 , HORVU2Hr1G116390.1 , HORVU2Hr1G116390.2 , HORVU2Hr1G116390.3
Wheat TraesCS2B02G048400 , TraesCS2D02G034500 , TraesCS2B02G558400 , TraesCS2B02G558400 , TraesCS2A02G035300 , TraesCS2B02G613100 , TraesCS2D02G027700 , TraesCS2A02G025700 , TraesCS2B02G038600 , TraesCS2A02G527700 , TraesCS2A02G527700 , TraesCS2D02G530600
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.005G137100 only inducible by pathogen inoculation(PubMedID : 20529887)@SbCHS1 to SbCHS7 (AF152548-AF152554) are highly conserved (at least 97.5% sequence identity at amino acid level) and closely related to the maize (Zea mays) C2 and Whp genes encoding CHS enzymes.(PubMedID : 15821144)@chalcone synthase, putative, expressed K00660: chalcone synthase
2 Sobic.005G136300 chalcone synthase(PubMedID : 26317421)@only inducible by pathogen inoculation(PubMedID : 20529887)@SbCHS1 to SbCHS7 (AF152548-AF152554) are highly conserved (at least 97.5% sequence identity at amino acid level) and closely related to the maize (Zea mays) C2 and Whp genes encoding CHS enzymes.(PubMedID : 15821144)@chalcone synthase, putative, expressed K00660: chalcone synthase
3 Sobic.005G137000 only inducible by pathogen inoculation(PubMedID : 20529887)@SbCHS1 to SbCHS7 (AF152548-AF152554) are highly conserved (at least 97.5% sequence identity at amino acid level) and closely related to the maize (Zea mays) C2 and Whp genes encoding CHS enzymes.(PubMedID : 15821144)@chalcone synthase, putative, expressed K00660: chalcone synthase
4 Sobic.003G215800 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@pleiotropic drug resistance protein, putative, expressed -
5 Sobic.001G066000 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@glutathione S-transferase, putative, expressed K00799: GST, glutathione S-transferase
6 Sobic.001G401300 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@PR10(PubMedID : 20078779)@accumulation during fungal development(PubMedID : 10356799)@pathogenesis-related Bet v I family protein, putative, expressed -
7 Sobic.010G004200 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@integral membrane protein DUF6 domain containing protein, expressed -
8 Sobic.005G117400 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@transcription factor(PubMedID : 30367619)@WRKY72, expressed -
9 Sobic.001G454100 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@transporter family protein, putative, expressed -
10 Sobic.009G043600 glutathione S-transferase, putative, expressed K00799: GST, glutathione S-transferase
11 Sobic.003G164800 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence./late senescence marker during developmental senescence(PubMedID : 27586543)@glutathione S-transferase, putative, expressed K00799: GST, glutathione S-transferase
12 Sobic.008G179500 SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@heavy metal-associated domain containing protein, expressed K07213: ATOX1, ATX1, copZ, copper chaperone
13 Sobic.002G000400 "A single-copy gene, share a similar catalytic mechanism with the licorice and Medicago truncatula FNSIIs (CYP93B subfamily) by converting flavanones to flavone through the formation of 2-hydroxyflavanones, CYP93B subfamily"(PubMedID : 20007684)@enzyme relate to flavone pathway(PubMedID : 27917182)@cytochrome P450, putative, expressed -
14 Sobic.003G349600 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@ZOS1-14 - C2H2 zinc finger protein, expressed -
15 Sobic.004G058000 VQ domain containing protein, putative, expressed -
16 Sobic.004G148000 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence./middle senescence marker during developmental senescence(PubMedID : 27586543)@Cupin domain containing protein, expressed -
17 Sobic.006G218300 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@no apical meristem protein, putative, expressed -
18 Sobic.008G034500 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@phytosulfokines precursor, putative, expressed -
19 Sobic.010G163000 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@reticuline oxidase-like protein precursor, putative, expressed -
20 Sobic.004G158901 - -


Gene co-expression network
sample Sobic005G137200 Sobic005G137200 Sobic005G137100 Sobic005G137100 Sobic005G137200--Sobic005G137100 Sobic005G136300 Sobic005G136300 Sobic005G137200--Sobic005G136300 Sobic005G137000 Sobic005G137000 Sobic005G137200--Sobic005G137000 Sobic003G215800 Sobic003G215800 Sobic005G137200--Sobic003G215800 Sobic001G066000 Sobic001G066000 Sobic005G137200--Sobic001G066000 Sobic001G401300 Sobic001G401300 Sobic005G137200--Sobic001G401300 Sobic010G004200 Sobic010G004200 Sobic005G137200--Sobic010G004200 Sobic005G117400 Sobic005G117400 Sobic005G137200--Sobic005G117400 Sobic001G454100 Sobic001G454100 Sobic005G137200--Sobic001G454100 Sobic005G137100--Sobic005G137200 Sobic004G148000 Sobic004G148000 Sobic005G137100--Sobic004G148000 Sobic008G030100 Sobic008G030100 Sobic005G137100--Sobic008G030100 Sobic003G323700 Sobic003G323700 Sobic005G137100--Sobic003G323700 Sobic003G387200 Sobic003G387200 Sobic005G137100--Sobic003G387200 Sobic005G137100--Sobic010G004200 Sobic002G139400 Sobic002G139400 Sobic005G137100--Sobic002G139400 Sobic003G349600 Sobic003G349600 Sobic005G137100--Sobic003G349600 Sobic003G429300 Sobic003G429300 Sobic005G137100--Sobic003G429300 Sobic002G000400 Sobic002G000400 Sobic005G136300--Sobic002G000400 Sobic005G136300--Sobic005G137200 Sobic005G136300--Sobic005G137000 Sobic005G136300--Sobic001G401300 Sobic005G136300--Sobic010G004200 Sobic005G136300--Sobic003G215800 Sobic005G136300--Sobic005G137100 Sobic006G226800 Sobic006G226800 Sobic005G136300--Sobic006G226800 Sobic005G136300--Sobic005G117400 Sobic005G137000--Sobic005G136300 Sobic005G137000--Sobic005G137200 Sobic002G035700 Sobic002G035700 Sobic005G137000--Sobic002G035700 Sobic002G217166 Sobic002G217166 Sobic005G137000--Sobic002G217166 Sobic005G137000--Sobic002G000400 Sobic005G137000--Sobic005G137100 Sobic005G137000--Sobic010G004200 Sobic003G164800 Sobic003G164800 Sobic005G137000--Sobic003G164800 Sobic009G003900 Sobic009G003900 Sobic005G137000--Sobic009G003900 Sobic003G215800--Sobic001G401300 Sobic003G215800--Sobic005G137200 Sobic002G090200 Sobic002G090200 Sobic003G215800--Sobic002G090200 Sobic003G215800--Sobic001G454100 Sobic008G034500 Sobic008G034500 Sobic003G215800--Sobic008G034500 Sobic001G466000 Sobic001G466000 Sobic003G215800--Sobic001G466000 Sobic010G107100 Sobic010G107100 Sobic003G215800--Sobic010G107100 Sobic004G058000 Sobic004G058000 Sobic003G215800--Sobic004G058000 Sobic003G215800--Sobic010G004200 Sobic009G043600 Sobic009G043600 Sobic001G066000--Sobic009G043600 Sobic004G050000 Sobic004G050000 Sobic001G066000--Sobic004G050000 Sobic006G218300 Sobic006G218300 Sobic001G066000--Sobic006G218300 Sobic006G121500 Sobic006G121500 Sobic001G066000--Sobic006G121500 Sobic003G322900 Sobic003G322900 Sobic001G066000--Sobic003G322900 Sobic004G277000 Sobic004G277000 Sobic001G066000--Sobic004G277000 Sobic001G319500 Sobic001G319500 Sobic001G066000--Sobic001G319500 Sobic002G055600 Sobic002G055600 Sobic001G066000--Sobic002G055600 Sobic002G249000 Sobic002G249000 Sobic001G066000--Sobic002G249000 Sobic001G401200 Sobic001G401200 Sobic001G401300--Sobic001G401200 Sobic001G400700 Sobic001G400700 Sobic001G401300--Sobic001G400700 Sobic001G401300--Sobic008G034500 Sobic001G401300--Sobic003G215800 Sobic002G333900 Sobic002G333900 Sobic001G401300--Sobic002G333900 Sobic008G191600 Sobic008G191600 Sobic001G401300--Sobic008G191600 Sobic001G247900 Sobic001G247900 Sobic001G401300--Sobic001G247900 Sobic006G039700 Sobic006G039700 Sobic001G401300--Sobic006G039700 Sobic001G401300--Sobic009G043600 Sobic004G311750 Sobic004G311750 Sobic010G004200--Sobic004G311750 Sobic010G004200--Sobic001G401300 Sobic001G260000 Sobic001G260000 Sobic010G004200--Sobic001G260000 Sobic010G004200--Sobic005G136300 Sobic010G004200--Sobic003G215800 Sobic008G054150 Sobic008G054150 Sobic010G004200--Sobic008G054150 Sobic010G004200--Sobic003G349600 Sobic010G004200--Sobic005G137200 Sobic004G037000 Sobic004G037000 Sobic010G004200--Sobic004G037000 Sobic004G158901 Sobic004G158901 Sobic005G117400--Sobic004G158901 Sobic007G125900 Sobic007G125900 Sobic005G117400--Sobic007G125900 Sobic005G117400--Sobic004G058000 Sobic005G117400--Sobic002G249000 Sobic003G348400 Sobic003G348400 Sobic005G117400--Sobic003G348400 Sobic005G117400--Sobic004G050000 Sobic003G232900 Sobic003G232900 Sobic005G117400--Sobic003G232900 Sobic007G025700 Sobic007G025700 Sobic005G117400--Sobic007G025700 Sobic010G224200 Sobic010G224200 Sobic005G117400--Sobic010G224200 Sobic001G454100--Sobic010G107100 Sobic010G163000 Sobic010G163000 Sobic001G454100--Sobic010G163000 Sobic005G229700 Sobic005G229700 Sobic001G454100--Sobic005G229700 Sobic006G216700 Sobic006G216700 Sobic001G454100--Sobic006G216700 Sobic003G192100 Sobic003G192100 Sobic001G454100--Sobic003G192100 Sobic003G285500 Sobic003G285500 Sobic001G454100--Sobic003G285500 Sobic006G158600 Sobic006G158600 Sobic001G454100--Sobic006G158600 Sobic001G454100--Sobic003G215800 Sobic008G059200 Sobic008G059200 Sobic001G454100--Sobic008G059200
Octagon: transcription factors


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